View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_89 (Length: 261)
Name: NF1519_low_89
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_89 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 29995457 - 29995692
Alignment:
| Q |
10 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29995457 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggtggtt |
29995556 |
T |
|
| Q |
110 |
gatgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
209 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29995557 |
gatgagaccttaagactttaccctgttgcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
29995656 |
T |
|
| Q |
210 |
gacttatagtaaatgcatgggcaatagggagagatc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
29995657 |
gacttatagtaaatgcatgggcaatagggagagatc |
29995692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 30043752 - 30043517
Alignment:
| Q |
10 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||| ||| | |||||||||||||||||||||||||| || |
|
|
| T |
30043752 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggtt |
30043653 |
T |
|
| Q |
110 |
gatgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30043652 |
gatgagaccttaagactttaccccgtagcaccgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacac |
30043553 |
T |
|
| Q |
210 |
gacttatagtaaatgcatgggcaatagggagagatc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30043552 |
gacttatagtaaatgcatgggcaatagggagagatc |
30043517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 29964966 - 29965200
Alignment:
| Q |
10 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||| |||||||||||||||| ||||||||||| || |
|
|
| T |
29964966 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattacttagatatggtggtt |
29965065 |
T |
|
| Q |
110 |
gatgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
209 |
Q |
| |
|
|||||||| |||||||||||||| || | ||| ||| || | |||||||| | |||||| |||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
29965066 |
gatgagacattaagactttaccctgttggacccttattacttcctcgtgaatgtagagaaagcataacaattgatggatattttataaaggaaaagacac |
29965165 |
T |
|
| Q |
210 |
gacttatagtaaatgcatgggcaatagggagagat |
244 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||| |
|
|
| T |
29965166 |
gagttatagtaaatgcatgggctatagggagagat |
29965200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 30009832 - 30009598
Alignment:
| Q |
10 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||| |||||||||||||||| ||||||||||| || |
|
|
| T |
30009832 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattacttagatatggtggtt |
30009733 |
T |
|
| Q |
110 |
gatgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
209 |
Q |
| |
|
|||||||| |||||||||||||| || | ||| ||| || | |||||||| | |||||| |||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
30009732 |
gatgagacattaagactttaccctgttggacccttattacttcctcgtgaatgtagagaaagcataacaattgatggatattttataaaggaaaagacac |
30009633 |
T |
|
| Q |
210 |
gacttatagtaaatgcatgggcaatagggagagat |
244 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||| |
|
|
| T |
30009632 |
gagttatagtaaatgcatgggctatagggagagat |
30009598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 30068269 - 30068034
Alignment:
| Q |
10 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttatt |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||| |||||||||||||||| ||||||||||| || |
|
|
| T |
30068269 |
gatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatttgaagaagttgaattacttagatatggtggtt |
30068170 |
T |
|
| Q |
110 |
gatgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
209 |
Q |
| |
|
||||| ||||||||||| || || || ||||| ||||||||||||| | | | |||||||| || || |||||||| ||||||||||||||||||||| |
|
|
| T |
30068169 |
gatgaaaccttaagactgtatcctgttgcacccttactagtccctcctaaatgtagagagaacataacaattgatgattattttataaaggaaaagacga |
30068070 |
T |
|
| Q |
210 |
gacttatagtaaatgcatgggcaatagggagagatc |
245 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||| |
|
|
| T |
30068069 |
gaattatggtaaatgcatgggcaatagggagagatc |
30068034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 30007246 - 30007480
Alignment:
| Q |
10 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttatt |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||| |||||||||| ||||| |||||||||||| || |
|
|
| T |
30007246 |
gatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatctgaagaagtttaattacttagatatggttgtt |
30007345 |
T |
|
| Q |
110 |
gatgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
209 |
Q |
| |
|
||||| |||||||||||||| || || | ||| ||| || |||||||||| | ||||||||||| || ||||||||| |||||||||| | ||||||| | |
|
|
| T |
30007346 |
gatgaaaccttaagactttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactc |
30007445 |
T |
|
| Q |
210 |
gacttatagtaaatgcatgggcaatagggagagat |
244 |
Q |
| |
|
|| ||||||||||||||||||| || ||||||||| |
|
|
| T |
30007446 |
gagttatagtaaatgcatgggctattgggagagat |
30007480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 30001130 - 30001365
Alignment:
| Q |
10 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttatt |
109 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||| |||| | |||| || || ||| ||||||| || ||||| |||||||||| || |
|
|
| T |
30001130 |
gatgaaaattcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttgaagaattttaattacctagatatggtggtt |
30001229 |
T |
|
| Q |
110 |
gatgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
209 |
Q |
| |
|
||||| |||||||||||||| || || ||||| ||| || |||||||||| | |||||||| || || |||||||| ||||| |||||| |||||||||| |
|
|
| T |
30001230 |
gatgaaaccttaagactttatcctgttgcacctttattaatccctcgtgaatgtagagagaacataacaattgatgattattctataaaagaaaagacac |
30001329 |
T |
|
| Q |
210 |
gacttatagtaaatgcatgggcaatagggagagatc |
245 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||| |
|
|
| T |
30001330 |
gagttatagtaaatgcatgggcaattgggagagatc |
30001365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 29953699 - 29953932
Alignment:
| Q |
11 |
atgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttattg |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| | |||| || | ||| ||||| ||||| || |
|
|
| T |
29953699 |
atgaaaatccttcaagatgagatacaaaatgaagtaggaaatgaaagaatgattgaagagaaagatttagagaacttaagttacttagagatggtggttc |
29953798 |
T |
|
| Q |
111 |
atgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacacg |
210 |
Q |
| |
|
|||| || |||||||||||||| || ||||| ||| || |||||||||| | ||||||||| || ||||||||| |||||||||||||||||||| || |
|
|
| T |
29953799 |
atgaaactttaagactttaccctgttgcacccttattactccctcgtgaatgtagagagagtgtaacaattgatggatattttataaaggaaaagactcg |
29953898 |
T |
|
| Q |
211 |
acttatagtaaatgcatgggcaatagggagagat |
244 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| |
|
|
| T |
29953899 |
agttatagtaaatgcatgggctatagggagagat |
29953932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 29946737 - 29946971
Alignment:
| Q |
10 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttatt |
109 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||| | | || ||||||||| | ||||||| | ||| ||||||||||| || |
|
|
| T |
29946737 |
gatgaaaacccttcaagatgatatacaaaatgaagtaggaaataaaagaatggtcgaagagaaagatttagagaagttaagttacttagatatggtggtt |
29946836 |
T |
|
| Q |
110 |
gatgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
209 |
Q |
| |
|
|||| || |||||||||||||| || ||||| || || |||||||||| | ||||||||| | || ||||||||| |||||||||| ||||||||||| |
|
|
| T |
29946837 |
catgaaactttaagactttaccctgttgcacccttgttactccctcgtgaatgtagagagagtataacaattgatggatattttataatggaaaagacac |
29946936 |
T |
|
| Q |
210 |
gacttatagtaaatgcatgggcaatagggagagat |
244 |
Q |
| |
|
|| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
29946937 |
gagttatagtaaatgcatgggctatagagagagat |
29946971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 29944765 - 29945000
Alignment:
| Q |
10 |
gatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggttatt |
109 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||| |||| | |||| || || ||| ||||||| || ||||| ||||||||||| || |
|
|
| T |
29944765 |
gatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttgaagaattttaattacttagatatggtggtt |
29944864 |
T |
|
| Q |
110 |
gatgagaccttaagactttaccccgtagcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacac |
209 |
Q |
| |
|
||||| || ||||||||| | || || |||| || || |||||||||| | |||||||| || || |||||||||||||||| ||||||||||||||| |
|
|
| T |
29944865 |
gatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggttattttgtaaaggaaaagacac |
29944964 |
T |
|
| Q |
210 |
gacttatagtaaatgcatgggcaatagggagagatc |
245 |
Q |
| |
|
|| ||||||||||||||| |||||| |||||||| |
|
|
| T |
29944965 |
gagttatagtaaatgcatttacaatagcgagagatc |
29945000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University