View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_9 (Length: 567)

Name: NF1519_low_9
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_9
NF1519_low_9
[»] chr5 (7 HSPs)
chr5 (252-549)||(32676610-32676905)
chr5 (277-528)||(38989252-38989494)
chr5 (356-520)||(40837726-40837889)
chr5 (154-372)||(40837970-40838186)
chr5 (268-523)||(41815601-41815856)
chr5 (431-538)||(10613126-10613233)
chr5 (391-491)||(4111966-4112066)
[»] chr6 (19 HSPs)
chr6 (250-538)||(14494412-14494699)
chr6 (250-529)||(12843814-12844092)
chr6 (161-526)||(17539931-17540295)
chr6 (252-513)||(19542064-19542325)
chr6 (250-525)||(1255634-1255912)
chr6 (235-525)||(56923-57201)
chr6 (310-525)||(19294300-19294512)
chr6 (339-526)||(34708842-34709028)
chr6 (351-529)||(34013448-34013625)
chr6 (351-529)||(34011225-34011402)
chr6 (273-529)||(2602001-2602255)
chr6 (292-443)||(33234871-33235016)
chr6 (423-504)||(12790562-12790643)
chr6 (250-327)||(34709064-34709141)
chr6 (154-219)||(19294549-19294614)
chr6 (5-74)||(34010938-34011007)
chr6 (154-219)||(14494316-14494381)
chr6 (273-318)||(17261715-17261760)
chr6 (6-94)||(34013828-34013911)
[»] chr3 (26 HSPs)
chr3 (236-523)||(11410600-11410887)
chr3 (250-525)||(43921916-43922190)
chr3 (262-523)||(21408844-21409105)
chr3 (250-525)||(27063655-27063930)
chr3 (162-525)||(26565226-26565577)
chr3 (250-435)||(10516138-10516323)
chr3 (251-526)||(17715817-17716092)
chr3 (251-526)||(19017046-19017321)
chr3 (250-435)||(10657411-10657595)
chr3 (431-523)||(27111149-27111242)
chr3 (235-361)||(14218476-14218604)
chr3 (274-367)||(29697023-29697116)
chr3 (336-397)||(2227280-2227340)
chr3 (310-395)||(49860462-49860546)
chr3 (480-541)||(32706375-32706436)
chr3 (419-512)||(14218381-14218476)
chr3 (417-469)||(49860407-49860459)
chr3 (4-134)||(43921666-43921791)
chr3 (495-526)||(2227457-2227488)
chr3 (235-309)||(49861099-49861174)
chr3 (4-53)||(25092126-25092175)
chr3 (339-388)||(27109376-27109424)
chr3 (418-495)||(27109420-27109497)
chr3 (339-388)||(27109774-27109822)
chr3 (74-134)||(10515952-10516012)
chr3 (488-524)||(44613364-44613400)
[»] chr2 (22 HSPs)
chr2 (292-529)||(9929542-9929778)
chr2 (250-529)||(26575978-26576250)
chr2 (250-515)||(27003960-27004227)
chr2 (324-529)||(32200870-32201074)
chr2 (250-525)||(34409554-34409830)
chr2 (256-522)||(44649945-44650202)
chr2 (305-528)||(13037220-13037442)
chr2 (250-453)||(4748053-4748255)
chr2 (250-529)||(17651170-17651447)
chr2 (391-540)||(41848919-41849068)
chr2 (353-519)||(16661253-16661418)
chr2 (476-538)||(4748257-4748319)
chr2 (461-549)||(18724894-18724983)
chr2 (407-483)||(40279805-40279879)
chr2 (250-331)||(15990041-15990123)
chr2 (153-307)||(13039011-13039165)
chr2 (154-219)||(34409459-34409524)
chr2 (4-73)||(41849351-41849420)
chr2 (151-209)||(41849228-41849286)
chr2 (154-214)||(17651476-17651536)
chr2 (2-54)||(32200608-32200660)
chr2 (340-444)||(38783673-38783776)
[»] chr8 (24 HSPs)
chr8 (250-529)||(28420952-28421230)
chr8 (250-529)||(15131941-15132218)
chr8 (261-527)||(44502204-44502469)
chr8 (317-525)||(15850496-15850703)
chr8 (245-529)||(1225967-1226250)
chr8 (323-515)||(37855085-37855276)
chr8 (274-444)||(18393548-18393717)
chr8 (251-525)||(18603044-18603304)
chr8 (277-522)||(27401741-27401985)
chr8 (273-529)||(13097355-13097604)
chr8 (307-416)||(2889764-2889872)
chr8 (307-416)||(3145263-3145371)
chr8 (466-526)||(44508417-44508477)
chr8 (482-537)||(3159743-3159798)
chr8 (154-216)||(15131843-15131905)
chr8 (307-423)||(3159848-3159963)
chr8 (3-70)||(18602813-18602880)
chr8 (275-354)||(31772527-31772606)
chr8 (307-431)||(2796200-2796326)
chr8 (1-54)||(15131731-15131784)
chr8 (391-444)||(28867284-28867337)
chr8 (391-444)||(28869847-28869900)
chr8 (339-423)||(2875441-2875524)
chr8 (494-522)||(31119324-31119352)
[»] chr7 (27 HSPs)
chr7 (235-508)||(37338721-37338993)
chr7 (271-526)||(27616239-27616494)
chr7 (250-520)||(46532774-46533043)
chr7 (310-523)||(22290779-22290991)
chr7 (252-493)||(32716489-32716728)
chr7 (313-436)||(45215999-45216121)
chr7 (285-441)||(11809286-11809440)
chr7 (273-441)||(11820525-11820691)
chr7 (298-371)||(44572487-44572560)
chr7 (426-512)||(44572565-44572651)
chr7 (268-410)||(6439769-6439914)
chr7 (379-529)||(11812611-11812752)
chr7 (292-444)||(27993898-27994052)
chr7 (342-511)||(44182664-44182831)
chr7 (352-441)||(11816926-11817013)
chr7 (476-529)||(45216113-45216166)
chr7 (341-441)||(11810979-11811077)
chr7 (292-529)||(11814414-11814642)
chr7 (4-73)||(22291172-22291241)
chr7 (483-523)||(11815708-11815748)
chr7 (442-525)||(10678255-10678338)
chr7 (146-297)||(10678435-10678584)
chr7 (7-134)||(46014521-46014643)
chr7 (273-435)||(48598314-48598474)
chr7 (461-543)||(9730090-9730172)
chr7 (2-47)||(10678674-10678719)
chr7 (154-219)||(45215898-45215963)
[»] chr1 (16 HSPs)
chr1 (250-515)||(32740775-32741036)
chr1 (250-525)||(9148972-9149243)
chr1 (237-513)||(48632542-48632813)
chr1 (154-509)||(23431798-23432155)
chr1 (250-517)||(7021541-7021811)
chr1 (272-444)||(3954946-3955117)
chr1 (273-444)||(3387651-3387821)
chr1 (309-440)||(18476506-18476637)
chr1 (257-368)||(126323-126435)
chr1 (273-529)||(16426343-16426598)
chr1 (471-542)||(10171642-10171713)
chr1 (476-549)||(30883231-30883304)
chr1 (360-464)||(125153-125256)
chr1 (292-444)||(50127176-50127326)
chr1 (160-314)||(18488333-18488488)
chr1 (476-525)||(124379-124428)
[»] chr4 (19 HSPs)
chr4 (156-529)||(45612316-45612685)
chr4 (235-441)||(17732772-17732979)
chr4 (154-456)||(40289031-40289330)
chr4 (343-529)||(54305567-54305752)
chr4 (235-408)||(31734527-31734697)
chr4 (354-529)||(55680648-55680822)
chr4 (270-424)||(44507704-44507857)
chr4 (259-455)||(2641122-2641321)
chr4 (250-331)||(3419960-3420041)
chr4 (398-528)||(658541-658671)
chr4 (476-526)||(35529481-35529532)
chr4 (4-134)||(658195-658320)
chr4 (379-455)||(35530048-35530122)
chr4 (5-94)||(55681028-55681112)
chr4 (254-334)||(658455-658536)
chr4 (305-358)||(24600931-24600984)
chr4 (305-358)||(24614618-24614671)
chr4 (9-86)||(45612167-45612244)
chr4 (466-518)||(40289809-40289860)
[»] scaffold0325 (1 HSPs)
scaffold0325 (268-524)||(12794-13050)
[»] scaffold0019 (1 HSPs)
scaffold0019 (237-528)||(70030-70323)
[»] scaffold0012 (1 HSPs)
scaffold0012 (273-444)||(209187-209355)
[»] scaffold1723 (1 HSPs)
scaffold1723 (273-444)||(334-502)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 1e-98; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 252 - 549
Target Start/End: Original strand, 32676610 - 32676905
Alignment:
Q  252 atacaagagttacatgtgtgttgagaaatgtagatcaattaggggt-tatagacattaaagttgattataacatttttagctttcttgatagtagatgaa 350  Q
    ||||||||||||||| ||| ||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  32676610 atacaagagttacatatgttttgagaaatgttgttcaattagggggatatagacattaaagttgattataacatttttaacttttttgatagtagatgaa 32676709  T
Q  351 taaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgtt 450  Q
    ||||||| | ||||||| ||||||||||| |||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||    
T  32676710 taaataa-gatcaaataatatgatatctt-gttttataactttttctaatgaaataaattgctcaa-ttagatgcttatgtatgtattttgattttcatt 32676806  T
Q  451 ttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtgccagtgtcgtgtcaagtgtc 549  Q
    |||||||||||| | |||| |||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  32676807 ttagaccgtctaaaaataaattaacatatatgtagcagggtcggtgtcctattttttttacattagcggtgtcgacgtgtcagtgtcgtgtcaggtgtc 32676905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 277 - 528
Target Start/End: Original strand, 38989252 - 38989494
Alignment:
Q  277 aaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatat 376  Q
    |||||| |||||||||||||||||||||||||   ||||||||| ||||||||  | | ||||||||||||||||||||||| |||||||||||||||||    
T  38989252 aaatgttgatcaattaggggttatagacattat--ttgattatatcatttttaaatcttttgatagtagatgaataaataaaagtcaaatactatgatat 38989349  T
Q  377 ctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaaca 476  Q
    | ||||| ||||| |||||||||||| ||||||| ||||| ||||||| | || |||||||||| |      ||||||||||||| |  | || |||| |    
T  38989350 c-ttgttgtagaactttttctaatgacataaattgctcaagttagatgttgatatatgtattttaa------ttttagaccgtctttgaaaaaattaaaa 38989442  T
Q  477 tatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgt 528  Q
    |||||||| |  |||| ||||||||||||||||||||||||| |||||||||    
T  38989443 tatatgtaacgttgtcagtgtcctatattttttacattagcgatgtcgacgt 38989494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 356 - 520
Target Start/End: Complemental strand, 40837889 - 40837726
Alignment:
Q  356 aaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttaga 455  Q
    |||||||||||||||  ||||||| ||||||||| ||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||| |||||||    
T  40837889 aaaggtcaaatactacaatatctt-gttttagaactttttctaatgaaataatttgctcaagttagatgcttatatatgtattttgattttcattttaga 40837791  T
Q  456 ccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggt 520  Q
    |||| |||| |||| ||||||||||| |||| ||||| ||||| ||||||||||||| |||||||    
T  40837790 ccgtatataaataaattaacatatatctagcggtgtcagtgtcttatattttttacactagcggt 40837726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 154 - 372
Target Start/End: Complemental strand, 40838186 - 40837970
Alignment:
Q  154 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagat 253  Q
    ||||||||||| ||||||| ||||||||  |||| ||| |||||| |||||||||| |||||||||        | | || ||||| | ||| || ||||    
T  40838186 ggtgtccgacatctatataacactcatacaagtcgtgtcggacaactcagacaaatgtctaaaacattttttttcct-cttgcttccagataccgtagat 40838088  T
Q  254 acaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataa 353  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||| ||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  40838087 acaagagttacatatgttttgagaaatgttgatcaattaggggtaataaacattatagtttattataacatttttagcttt-ttgatagtagatgaataa 40837989  T
Q  354 ataaaggtcaaatactatg 372  Q
    |||||||||||||| ||||    
T  40837988 ataaaggtcaaatattatg 40837970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 268 - 523
Target Start/End: Original strand, 41815601 - 41815856
Alignment:
Q  268 tgtgttgagaaatgt-agatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaat 366  Q
    ||||||||||||| | |||||||| ||||||||||||||| |||||   |||     ||||||||||| | ||||| ||||| |||||||||||||||||    
T  41815601 tgtgttgagaaatcttagatcaatgaggggttatagacatcaaagtcacttacggtgtttttagctttttcgatagaagatggataaataaaggtcaaat 41815700  T
Q  367 actatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg-attttcgttttagaccgtctatag 465  Q
       ||  ||| |||||||||||| ||||| |||| |||||| || ||||| |||||||   |||||||| ||||  ||| ||  ||| || | | ||||     
T  41815701 gtcatcttat-tttgttttagaattttttttaattaaataatttgctcaaattagatgaacatgtatgttttttttattctcaatttggatcttttataa 41815799  T
Q  466 ataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtc 523  Q
    |||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  41815800 ataaattaatatatatgtagcggtgtcggtgtcctat-ttttttacattagcggtgtc 41815856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 431 - 538
Target Start/End: Complemental strand, 10613233 - 10613126
Alignment:
Q  431 tatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtgc 530  Q
    ||||||||||  ||||| |||||||  |||| || |||| |||||||||||||| | ||||| |||||||||||||||| ||| ||| |||||||||||     
T  10613233 tatgtattttagttttcattttagattgtctttaaataaattaacatatatgtaacggtgtcagtgtcctatatttttttcataagcagtgtcgacgtgt 10613134  T
Q  531 cagtgtcg 538  Q
    | ||||||    
T  10613133 ccgtgtcg 10613126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 4112066 - 4111966
Alignment:
Q  391 tttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtg 490  Q
    ||||| |||||||||||||  |||   |||||||| |||||||||||||||||| ||  |||||| | | |||| |||| |||| ||||| ||||| |||    
T  4112066 tttttttaatgaaataaatggctccggttagatgcatatgtatgtattttgattctcaatttagatcttttatatataaattaatatataagtagcggtg 4111967  T
Q  491 t 491  Q
    |    
T  4111966 t 4111966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 6e-88; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 250 - 538
Target Start/End: Original strand, 14494412 - 14494699
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    |||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||| |||| |||||| |||| ||    
T  14494412 agatacaagaattacatatgttttgagaaatgttgatcaattaggggttatagacatcatagttgattatatcatttttaacttttttgataatagacga 14494511  T
Q  350 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgt 449  Q
    ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| || ||  |||||| |||| |||||||||| |||||| |    
T  14494512 ataaataaaggtcaaatactatgatat-tttgttgtagaactttttctaatgaaataaattgctaaagatagatgtttatatatgtattttaattttcat 14494610  T
Q  450 tttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtgccagtgtcg 538  Q
    |||||||||||| || |||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| | ||||||    
T  14494611 tttagaccgtctttaaataaattaacatatatgtagcggtgtcggtgtcctgtatattttacattagcggtgtcgacgtgtccgtgtcg 14494699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 250 - 529
Target Start/End: Complemental strand, 12844092 - 12843814
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  12844092 agatacaagagttacatatgttttgagaaatgttgatcaattaggggttatacacattatagttgattatatcatttttagcttttttgatagtagatga 12843993  T
Q  350 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgt 449  Q
    |||||||||||||||||||||||||||| || || ||||| || ||||||||||||| ||| ||||| ||||||| |||| |||||||||| |||||| |    
T  12843992 ataaataaaggtcaaatactatgatatc-ttattgtagaacttgttctaatgaaatatattgctcaagttagatgtttatatatgtattttcattttcat 12843894  T
Q  450 tttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    |||||||||||| || |||| |||||||||||||||| ||||  ||||||||||||| ||| |||||| |||||||||||    
T  12843893 tttagaccgtctttaaataaattaacatatatgtagcagtgttagtgtcctatatttgttatattagcagtgtcgacgtg 12843814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 161 - 526
Target Start/End: Complemental strand, 17540295 - 17539931
Alignment:
Q  161 gacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagatacaagag 260  Q
    |||||||||||| |||||||||||  | ||| |||||| ||||||||||||||||||||        || ||| |||||  || | |  |||||||||||    
T  17540295 gacacctatataacactcatatgaaccgtgtcggacaactcagacaaatatctaaaacaatttttttctctcttgcttccgcacaccatagatacaagag 17540196  T
Q  261 ttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaagg 360  Q
    |||||| ||| ||||||||||| |||||||||||||||||| |  ||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  17540195 ttacatatgttttgagaaatgttgatcaattaggggttataaaagttatagttgattatatcatttttagcttttttgatagtagataaataaataaagg 17540096  T
Q  361 tcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtc 460  Q
    ||||||||||||||||| || ||  |||| |||||||||||  ||||||| | ||| ||||||| |||| |||||||||| |||||| ||||||||||||    
T  17540095 tcaaatactatgatatc-ttattgcagaactttttctaatgtcataaattgcccaagttagatgtttatatatgtattttaattttcattttagaccgtc 17539997  T
Q  461 tatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgac 526  Q
    | || |||| ||||||||||||||   ||||||||||| |||||||||||||||| ||||||||||    
T  17539996 tttaaataaattaacatatatgtaatggtgtcggtgtcttatattttttacattaacggtgtcgac 17539931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 252 - 513
Target Start/End: Complemental strand, 19542325 - 19542064
Alignment:
Q  252 atacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaat 351  Q
    ||||||||||||||| ||| ||||||||| | || |||||| |||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  19542325 atacaagagttacatttgttttgagaaatattgaacaattaagggttagagatattaaagttgattataacaattttagcattcttgatagtagatgaat 19542226  T
Q  352 aaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatg-cttatgtatgtattttgattttcgtt 450  Q
    ||||||||| ||||||||| ||||| |||||||||||| |||||| |||||||| ||||| |||| ||||||| ||||||||||||||||||||||  ||    
T  19542225 aaataaaggacaaatactaagatat-tttgttttagaattttttccaatgaaatcaatttttcaagttagatgccttatgtatgtattttgattttaatt 19542127  T
Q  451 ttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacat 513  Q
    ||| |||||||||| |||| |||||||||||||||| || ||| |||||||| ||||||||||    
T  19542126 ttataccgtctataaataaattaacatatatgtagcagtatcgatgtcctatgttttttacat 19542064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 250 - 525
Target Start/End: Original strand, 1255634 - 1255912
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattagggg-ttatagacattaaagttgattataacatttttagctttcttgatagtagatg 348  Q
    ||||||||||| |||||  || ||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||||     
T  1255634 agatacaagagctacataggttttgaggaatgttgatcaattagggggttatagacattacagttgattataacatttttagcttttttgatagcagata 1255733  T
Q  349 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcg 448  Q
     ||||||||| ||||||||||| |||||||| ||||||||| |||||||||| |||||| || ||||| ||| |||||||| |||||||||||||||||     
T  1255734 cataaataaatgtcaaatactacgatatctt-gttttagaactttttctaataaaataacttgctcaagttaaatgcttatatatgtattttgattttca 1255832  T
Q  449 ttttagaccgtctatagataatttaacatatat---gtagctgtgtcggtgtcctatattttttacattagcggtgtcga 525  Q
    |||||||||||||| | |||| |||||||||||   ||||| |||||||||||| |||||||||||| || | |||||||    
T  1255833 ttttagaccgtctacaaataaattaacatatatgtagtagcggtgtcggtgtcccatattttttacactaacagtgtcga 1255912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 235 - 525
Target Start/End: Complemental strand, 57201 - 56923
Alignment:
Q  235 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattag-gggttatagacattaaagttgattataacatttttagctt 333  Q
    ||||| ||||| || ||||||||||||||||| ||| | ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| |||    
T  57201 gcttccacataccgtagatacaagagttacatatgtttggagaaatgttgatcaactagagggttatagacattaaagttgattataacatttttacctt 57102  T
Q  334 tcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtat 433  Q
    | ||||||||||||||||||            |||||| |||||||  | ||||||  |||||||||||||||| || ||||| ||||||||||||| ||    
T  57101 ttttgatagtagatgaataa------------tactattatatctta-tattagaacattttctaatgaaataagttgctcaagttagatgcttatgaat 57015  T
Q  434 gtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcga 525  Q
     |||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||    
T  57014 atattttaattttcgatttagaccgtctatagataaattaacatatatgtagcggtgttcgtgtcctatattttttatattagcggtgtcga 56923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 310 - 525
Target Start/End: Complemental strand, 19294512 - 19294300
Alignment:
Q  310 agttgattataacattttt-agctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaa 408  Q
    ||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| |||   ||| ||||||||||||||||||    
T  19294512 agttgattatatcattttttagcttttttcatagtagatgaataaataaaggtcaaatactatgatatctt-gtt---gaactttttctaatgaaataaa 19294417  T
Q  409 tttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttt 508  Q
    || || || ||||||| |||| |||||||||| |||| | ||||||||||||| || |||| |||||||||||||||| || ||||||||||||||||||    
T  19294416 ttgcttaagttagatgtttatatatgtattttaatttccattttagaccgtctttaaataaattaacatatatgtagcggtatcggtgtcctatattttt 19294317  T
Q  509 tacattagcggtgtcga 525  Q
    |||||||||||||||||    
T  19294316 tacattagcggtgtcga 19294300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 339 - 526
Target Start/End: Complemental strand, 34709028 - 34708842
Alignment:
Q  339 atagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatt 438  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||| |||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  34709028 atagtagatgaataaataaaggtcaaatactatgatatctt-gttggagaactttttctaatgaaataaatttctcaagttagatgtttatatatgtatt 34708930  T
Q  439 ttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgac 526  Q
    || |||||  ||||||||  ||| || |||| |||||||||| |||| |||||||||||||||||||| |||||||| |||| |||||    
T  34708929 ttaattttaattttagactatctttaaataaattaacatatacgtagatgtgtcggtgtcctatatttcttacattaacggtatcgac 34708842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 351 - 529
Target Start/End: Complemental strand, 34013625 - 34013448
Alignment:
Q  351 taaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgtt 450  Q
    |||||||| |||||||||||||||||||| ||| ||||| ||||| | |||| ||||||| ||| | ||||||| |||| |||||||||| ||||||  |    
T  34013625 taaataaatgtcaaatactatgatatctt-gttgtagaactttttatgatgacataaattgctcgagttagatgtttatatatgtattttaattttcact 34013527  T
Q  451 ttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    |||||| |||| || |||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  34013526 ttagacggtctttaaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtg 34013448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 351 - 529
Target Start/End: Original strand, 34011225 - 34011402
Alignment:
Q  351 taaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgtt 450  Q
    |||||||| |||||||||||||||||||| ||| ||||| ||||| | |||| ||||||| ||| | ||||||| |||| |||||||||| ||||||  |    
T  34011225 taaataaatgtcaaatactatgatatctt-gttgtagaactttttatgatgacataaattgctcgagttagatgtttatatatgtattttaattttcact 34011323  T
Q  451 ttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    |||||| |||| || |||| |||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||    
T  34011324 ttagacggtctttaaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggcgtcgacgtg 34011402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 529
Target Start/End: Complemental strand, 2602255 - 2602001
Alignment:
Q  273 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 372  Q
    |||||||||| |||||| ||||| ||||| |||||||||||||||| ||||  ||||  ||| | ||||||| ||| |||||||||||  |||||||||     
T  2602255 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggtaaatactatt 2602156  T
Q  373 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataattt 472  Q
     |||| ||||| || |  ||||||||||||| |||  | || || |||||||| ||||| |||||||||||| |   |||||| | | |||| |||| ||    
T  2602155 gtatc-ttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgattcttaatttagatcttttataaataaatt 2602058  T
Q  473 aacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    || ||||| ||||  |||||||||||| |  |||||||||||| | |||||||||||    
T  2602057 aatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgacgtg 2602001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 292 - 443
Target Start/End: Original strand, 33234871 - 33235016
Alignment:
Q  292 aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaat 391  Q
    ||||||||||||||||||||||||||| |||||||| |  ||| | ||||||||||| |||||| |||||||||||||||  |||| ||||| || |||     
T  33234871 aggggttatagacattaaagttgattacaacattttgaaattt-tcgatagtagatggataaat-aaggtcaaatactattgtatc-ttgttata-aaac 33234966  T
Q  392 ttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 443  Q
    |||| |||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  33234967 ttttttaatgaaataaattgctcaagttagatgc--atgtatgtattttgat 33235016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 423 - 504
Target Start/End: Original strand, 12790562 - 12790643
Alignment:
Q  423 tgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatat 504  Q
    ||||||| |||||| |||||||||| ||||||| ||| |||| |||| |||||||||||||||| |||||||||||||||||    
T  12790562 tgcttatatatgtaatttgattttcattttagatcgtatataaataaattaacatatatgtagcggtgtcggtgtcctatat 12790643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 34709141 - 34709064
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttt 327  Q
    ||||| |||||||| || | | |||| |||||| |||||||||||||||||| |||||| ||||||||||| ||||||    
T  34709141 agatataagagttatatatattttgaaaaatgttgatcaattaggggttatatacattatagttgattatatcatttt 34709064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 19294614 - 19294549
Alignment:
Q  154 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaaca 219  Q
    |||||||||||||| |||| |||||||| ||| | ||| |||||| ||| ||||||||||||||||    
T  19294614 ggtgtccgacacctgtataacactcatacgagccgtgtcggacaagtcacacaaatatctaaaaca 19294549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 34010938 - 34011007
Alignment:
Q  5 tatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactcca 74  Q
    ||||||||||| ||||||  || ||||| |||||||| ||||| ||||||||| |||||| |||||||||    
T  34010938 tatgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccgacactcca 34011007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 14494316 - 14494381
Alignment:
Q  154 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaaca 219  Q
    ||||||||||||||||||| |||| ||| ||| | ||| |||||| ||| |||||||||| |||||    
T  14494316 ggtgtccgacacctatataacactaatacgagccgtgtcggacaactcacacaaatatcttaaaca 14494381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 17261760 - 17261715
Alignment:
Q  273 tgagaaatgtagatcaattaggggttatagacattaaagttgatta 318  Q
    |||||||||| ||||||| |||||||||  ||||||||||||||||    
T  17261760 tgagaaatgttgatcaatgaggggttatgtacattaaagttgatta 17261715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 34013911 - 34013828
Alignment:
Q  6 atgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacga 94  Q
    |||||||||| ||||||  || ||||| |||||||| ||||| |||| |||| |||||| |||||||||     |||||||||||||||    
T  34013911 atgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgacaagcgtcggtgtccgacactcca-----atgacacttgtacga 34013828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 236 - 523
Target Start/End: Complemental strand, 11410887 - 11410600
Alignment:
Q  236 cttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggtta-tagacattaaagttgattataacatttttagcttt 334  Q
    |||| ||||| || ||||||||||||||||| ||| ||||||||||| ||||||||||||| || |||| ||||  ||||||||||||| ||||||| ||    
T  11410887 cttccacataccgtagatacaagagttacatatgttttgagaaatgttgatcaattagggggtaatagatattattgttgattataacagttttagcctt 11410788  T
Q  335 cttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatg 434  Q
     |||||||||||||||||||||||||| |||||||| ||||||||  |||||||| ||||||||||||||||| || ||||| |||||||||||  ||||    
T  11410787 tttgatagtagatgaataaataaaggttaaatactacgatatcttc-ttttagaactttttctaatgaaataacttgctcaagttagatgcttaaatatg 11410689  T
Q  435 tattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtc 523  Q
    ||||||||||||| ||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  11410688 tattttgattttcattttagaccgtatataaataaattaacatatatgtagcggtgtcggtgtcctatatattttacactagcggtgtc 11410600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 250 - 525
Target Start/End: Original strand, 43921916 - 43922190
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    ||||||||||||||||| ||| ||||||||||| ||||||| |||| | || ||||||| | ||||||||||||||||||||||| |||||| |||||||    
T  43921916 agatacaagagttacatatgttttgagaaatgttgatcaatcagggttaattgacattacaattgattataacatttttagcttttttgatattagatga 43922015  T
Q  350 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgt 449  Q
    |||||||||| |||||||||| ||| || ||||||||||| ||||||||||||||||| || ||||| ||||||| ||   |||||||||| |||||| |    
T  43922016 ataaataaagatcaaatactacgatgtc-ttgttttagaactttttctaatgaaataacttgctcaagttagatgtttggatatgtatttttattttcat 43922114  T
Q  450 tttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcga 525  Q
     ||||||| | |||| |||| ||||||| |||||||  ||||||||||||||||||||||||| ||||||||||||    
T  43922115 gttagaccatatataaataaattaacatgtatgtagaggtgtcggtgtcctatattttttacactagcggtgtcga 43922190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 262 - 523
Target Start/End: Original strand, 21408844 - 21409105
Alignment:
Q  262 tacatgtgtgttgagaaatgtagatcaattaggggttat-agacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaagg 360  Q
    ||||| ||| ||||||||||| ||||||||||||| ||  | |||||| | |||||||||||||||||| | || || ||||||||||||||||||||||    
T  21408844 tacatatgttttgagaaatgttgatcaattagggggtaacaaacattacaattgattataacatttttaaccttttttatagtagatgaataaataaagg 21408943  T
Q  361 tcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtc 460  Q
    |||||||||| ||||||||  |||||||| ||||||||||||||||| || ||||| |||||| ||||| | ||||||||||||||| |||||||||||     
T  21408944 tcaaatactacgatatctta-ttttagaattttttctaatgaaataacttgctcaaattagattcttatatttgtattttgattttcattttagaccgta 21409042  T
Q  461 tatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtc 523  Q
    |||| |||| |||||||||||||||| ||||| || ||||||||||||||||||| |||||||    
T  21409043 tataaataaattaacatatatgtagcggtgtcagtatcctatattttttacattaacggtgtc 21409105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 250 - 525
Target Start/End: Complemental strand, 27063930 - 27063655
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaatt-aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatg 348  Q
    ||||| ||||||||||| | ||||||||||||| |||||||| ||| |||||||| ||| ||||| |||| |||||||||||||||  ||| ||||||||    
T  27063930 agatataagagttacatatatgttgagaaatgttgatcaatttaggagttatagaaatttaagttaattacaacatttttagcttttatgacagtagatg 27063831  T
Q  349 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcg 448  Q
    ||||||||||||||| ||| |||| |||||| |||||||||  |||| ||| |||||||| | ||||| |||||||||||  ||||| |||||||| ||     
T  27063830 aataaataaaggtcatatattatggtatctt-gttttagaacgttttttaaagaaataaactgctcaagttagatgcttaaatatgtgttttgattatca 27063732  T
Q  449 ttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcga 525  Q
    |||||||||||||||| |||| |||| ||||||||| | ||||   || ||||||||||||||||||| | ||||||    
T  27063731 ttttagaccgtctataaataaattaatatatatgtaccggtgtttatgccctatattttttacattagagatgtcga 27063655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 162 - 525
Target Start/End: Complemental strand, 26565577 - 26565226
Alignment:
Q  162 acacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagatacaagagt 261  Q
    ||||||||||| |||||||| ||| | ||| |||||| ||||||||||||||||||||        || ||| ||||| |||||||  ||||| ||||||    
T  26565577 acacctatataacactcatacgagccgtgtcggacaactcagacaaatatctaaaacattttttt-ctctcttgcttccacatatcttagatataagagt 26565479  T
Q  262 tacatgtgtgttgagaaatgtagatcaattaggg-gttatagacattaaagttgattataacatttttagc-tttcttgatagtagatgaataaataaag 359  Q
    ||||| ||| || |||||||| ||||| |||||| || |||||||||| |||| ||||||||||||||||| ||| ||||  ||| ||||  ||||||||    
T  26565478 tacatatgtttttagaaatgttgatcatttagggagtaatagacattacagttaattataacatttttagccttttttgacggtaaatgagaaaataaag 26565379  T
Q  360 gtcaaatactatgatatctttgttttagaaat-ttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccg 458  Q
     |||||||||| |||||||| |||||| |  | |||||           |||| |||  |||||| | ||| ||||||||||||||||| |||||||||     
T  26565378 atcaaatactacgatatctt-gttttatatgtattttc-----------attt-tcattttagat-cgtatatatgtattttgattttcattttagacca 26565293  T
Q  459 tctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcga 525  Q
    | |||| |||| |||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||    
T  26565292 tatataaataaattaacatatatgtaacggtgtcagtgtcctgtattttttacattagcggtgtcga 26565226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 250 - 435
Target Start/End: Original strand, 10516138 - 10516323
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggtta-tagacattaaagttgattataacatttttagctttcttgatagtagatg 348  Q
    ||||||||||||||||| ||| || | ||||||  |||||||||||| || || |||||| || | ||||||||||||||| | || ||||||| || ||    
T  10516138 agatacaagagttacatatgttttaaaaaatgttaatcaattagggggtaatatacattatagcttattataacatttttaacctttttgataggagttg 10516237  T
Q  349 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgt 435  Q
    ||||||||| |||||||||||| |||||| || |||||||| ||||||||||||||||| || ||||| ||| |||||||| |||||    
T  10516238 aataaataatggtcaaatactacgatatc-ttattttagaactttttctaatgaaataacttgctcaagttatatgcttatctatgt 10516323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 251 - 526
Target Start/End: Original strand, 17715817 - 17716092
Alignment:
Q  251 gatacaagagttacatgtgtgttgagaaatgtagatcaatta-ggggttatagacattaaagttgattataacatttttagc-tttcttgatagtagatg 348  Q
    |||||||||||||||| |||||||| ||||||  |||||||| ||||||||||| |||||||||||||| ||  ||||| || ||| || ||| ||||||    
T  17715817 gatacaagagttacatatgtgttgataaatgtgtatcaattatggggttatagaaattaaagttgattacaatgtttttggcttttttttataatagatg 17715916  T
Q  349 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgc---ttatgtatgtattttgattt 445  Q
    ||||||||||||||||||  |||  |||| |||||||||||  ||||  ||| |||||||||   ||| |||  | |   ||||||||||||||||||||    
T  17715917 aataaataaaggtcaaattttatcgtatc-ttgttttagaacctttttcaattaaataaatt--gcaagttaagttcttattatgtatgtattttgattt 17716013  T
Q  446 tcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgac 526  Q
     | |||||||   | | || |||| |||  ||||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  17716014 gcattttaga--ttatctaaataaattagtatatatgtagcggtgtcagtgtcctatattatttacattagcggtgtcgac 17716092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 251 - 526
Target Start/End: Original strand, 19017046 - 19017321
Alignment:
Q  251 gatacaagagttacatgtgtgttgagaaatgtagatcaatta-ggggttatagacattaaagttgattataacatttttagc-tttcttgatagtagatg 348  Q
    |||||||||||||||| |||||||| ||||||  |||||||| ||||||||||| |||||||||||||| ||  ||||| || ||| || ||| ||||||    
T  19017046 gatacaagagttacatatgtgttgataaatgtgtatcaattatggggttatagaaattaaagttgattacaatgtttttggcttttttttataatagatg 19017145  T
Q  349 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgc---ttatgtatgtattttgattt 445  Q
    ||||||||||||||||||  |||  |||| |||||||||||  ||||  ||| |||||||||   ||| |||  | |   ||||||||||||||||||||    
T  19017146 aataaataaaggtcaaattttatcgtatc-ttgttttagaacctttttcaattaaataaatt--gcaagttaagttcttattatgtatgtattttgattt 19017242  T
Q  446 tcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgac 526  Q
     | |||||||   | | || |||| |||  ||||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  19017243 gcattttaga--ttatctaaataaattagtatatatgtagcggtgtcagtgtcctatattatttacattagcggtgtcgac 19017321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 435
Target Start/End: Original strand, 10657411 - 10657595
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatag-acattaaagttgattataacatttttagctttcttgatagtagatg 348  Q
    |||||||||| |||||| ||| |||| |||||| |||||||||| || || |  |||||| |  ||||||||||||||||| |||| |||| || || ||    
T  10657411 agatacaagatttacatatgttttgaaaaatgttgatcaattagaggctaaaatacattacatatgattataacatttttaacttttttga-aggagttg 10657509  T
Q  349 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgt 435  Q
    ||||||||||||||||||  || |||||||| ||||||||| |||||||||| |||||| || || || ||| |||||||| |||||    
T  10657510 aataaataaaggtcaaattatacgatatctt-gttttagaactttttctaataaaataacttacttaagttatatgcttatctatgt 10657595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 431 - 523
Target Start/End: Original strand, 27111149 - 27111242
Alignment:
Q  431 tatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatatttttt-acattagcggtgtc 523  Q
    ||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||   |||||||||||||||||||||| ||| ||||||||||    
T  27111149 tatgtattttgattttcattttagaccgtttataaataaattaacatatatgtaatggtgtcggtgtcctatattttttaacactagcggtgtc 27111242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 235 - 361
Target Start/End: Complemental strand, 14218604 - 14218476
Alignment:
Q  235 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggtta-tagacattaaagttgattataacatttttag-ct 332  Q
    ||||| ||||| || ||| |||||||| |||| | | |||| |||||| ||||||||||||| || ||||||||| |||||||||||||||||||||  |    
T  14218604 gcttccacataccgtagacacaagagtcacatatattttgataaatgttgatcaattagggggtaatagacattacagttgattataacatttttagttt 14218505  T
Q  333 ttcttgatagtagatgaataaataaaggt 361  Q
    || || ||||||||| |||||||||||||    
T  14218504 ttttttatagtagataaataaataaaggt 14218476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 274 - 367
Target Start/End: Complemental strand, 29697116 - 29697023
Alignment:
Q  274 gagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaata 367  Q
    ||||||||| | ||||  ||||||||||||||||||| |||||| ||||||||||||||||   ||||| ||||| |||||||||| |||||||    
T  29697116 gagaaatgttgttcaaggaggggttatagacattaaaattgattctaacatttttagcttttacgatagcagatgtataaataaagctcaaata 29697023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 2227280 - 2227340
Alignment:
Q  336 ttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttct 397  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||    
T  2227280 ttgatagtagatgaataaataaaggtcaaatactatgacatc-ttgttgtagaactttttct 2227340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 49860546 - 49860462
Alignment:
Q  310 agttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaattttt 395  Q
    |||||||||||| |||||||||| | |||||||||||| |||||||||| ||||||||| |  ||||| ||||||||||| |||||    
T  49860546 agttgattataagatttttagctcttttgatagtagataaataaataaatgtcaaataccactatatc-ttgttttagaacttttt 49860462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 480 - 541
Target Start/End: Original strand, 32706375 - 32706436
Alignment:
Q  480 atgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtgccagtgtcgtgt 541  Q
    ||||||| |||| ||||||||||||||||||||||||| || |||| ||| |||||||||||    
T  32706375 atgtagcagtgttggtgtcctatattttttacattagcagtctcgaggtgtcagtgtcgtgt 32706436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 512
Target Start/End: Complemental strand, 14218476 - 14218381
Alignment:
Q  419 tagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatat--atgtagctgtgtcggtgtcctatattttttaca 512  Q
    |||||| | |||||||||||||||||||| ||||||| | | |||| |||| |||||||||  ||||||| ||||| | ||||||||| |||||||    
T  14218476 tagatggtgatgtatgtattttgattttcattttagatcttatataaataaattaacatatacatgtagcagtgtcagagtcctatatcttttaca 14218381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 49860459 - 49860407
Alignment:
Q  417 cttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataa 469  Q
    ||||||||||||||||||||||||||||||| ||||||| | |||||| ||||    
T  49860459 cttagatgcttatgtatgtattttgattttcattttagatcatctataaataa 49860407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 43921666 - 43921791
Alignment:
Q  4 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacgatagttgtag 103  Q
    |||||||||||| |||||| ||| |||||||||||| | ||||| ||||||| | |||||| ||     ||||||||||||||||||  || |  ||| |    
T  43921666 ctatgaagcacggacacctctaggactagccgtgtcacggtgtccgacacgcttcggtgtccga-----cactcctatgacacttgtctgacacgtgtcg 43921760  T
Q  104 gacaactaagaccagtgtcatagataaaatt 134  Q
    ||||||||| | | ||||| |||||||||||    
T  43921761 gacaactaaaatcggtgtcctagataaaatt 43921791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 526
Target Start/End: Original strand, 2227457 - 2227488
Alignment:
Q  495 tgtcctatattttttacattagcggtgtcgac 526  Q
    ||||||||||||||||||||||||||||||||    
T  2227457 tgtcctatattttttacattagcggtgtcgac 2227488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 49861174 - 49861099
Alignment:
Q  235 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaatta-ggggttatagacattaa 309  Q
    ||||||||| | || |||||||||||||||||  || |||||| |||| ||||||||| ||||| |||||||||||    
T  49861174 gcttctacacaccgtagatacaagagttacataagttttgagatatgttgatcaattagggggtcatagacattaa 49861099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 25092126 - 25092175
Alignment:
Q  4 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacac 53  Q
    |||||||||||| |||||| ||| |||||  |||||||||||||||||||    
T  25092126 ctatgaagcacggacacctctaggactaggtgtgtcgcagtgtctgacac 25092175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 27109376 - 27109424
Alignment:
Q  339 atagtagatgaataaataaaggtcaaatactatgatatctttgttttaga 388  Q
    |||||||||||||||||||| ||||||||||| ||| || ||||||||||    
T  27109376 atagtagatgaataaataaatgtcaaatactacgatttc-ttgttttaga 27109424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 495
Target Start/End: Original strand, 27109420 - 27109497
Alignment:
Q  418 ttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggt 495  Q
    |||||||||||| |||||||||| |||||  ||||||||||||| || ||||  |||  |||||||| | ||||||||    
T  27109420 ttagatgcttatatatgtatttttatttttattttagaccgtctgtaaataaactaagttatatgtatcggtgtcggt 27109497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 27109774 - 27109822
Alignment:
Q  339 atagtagatgaataaataaaggtcaaatactatgatatctttgttttaga 388  Q
    ||||||||||||||||||||| ||||||||||  ||||| ||||||||||    
T  27109774 atagtagatgaataaataaagatcaaatactacaatatc-ttgttttaga 27109822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 10515952 - 10516012
Alignment:
Q  74 actcctatgacacttgtacgatagttgtaggacaactaagaccagtgtcatagataaaatt 134  Q
    ||||||||||||||||| |||||  ||| |||||||||| | ||||||| || ||||||||    
T  10515952 actcctatgacacttgtccgatacgtgttggacaactaaaatcagtgtcttaaataaaatt 10516012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 524
Target Start/End: Original strand, 44613364 - 44613400
Alignment:
Q  488 gtgtcggtgtcctatattttttacattagcggtgtcg 524  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  44613364 gtgtcggtgtcctatatttttgacattagcagtgtcg 44613400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 292 - 529
Target Start/End: Complemental strand, 9929778 - 9929542
Alignment:
Q  292 aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaat 391  Q
    ||||||||||||||||| ||||||| ||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |    
T  9929778 aggggttatagacattacagttgatcatatcattttgagcatttttgatagtagatgaataaataaaggtcaaatactatgatatctt-gttgtagaact 9929680  T
Q  392 ttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgt 491  Q
    ||||||||||||||||||| ||||| ||||||| |||| |||||||||| |||||| ||||||||||||| || |||| |||||||||||||||| ||||    
T  9929679 ttttctaatgaaataaattgctcaaattagatgtttatatatgtattttaattttcattttagaccgtctttaaataaattaacatatatgtagcagtgt 9929580  T
Q  492 cggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
     |||||||||||||||||||||||||||||||||||||    
T  9929579 tggtgtcctatattttttacattagcggtgtcgacgtg 9929542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 250 - 529
Target Start/End: Complemental strand, 26576250 - 26575978
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||||| |||||||||||||| ||||||||||| | ||||||||||  ||||||||||||||    
T  26576250 agatacaagagttacatatgttttgagaaatgttgatcgattagtggttatagacattatagttgattatatcgtttttagcttatttgatagtagatga 26576151  T
Q  350 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgt 449  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||| ||||||| |||| |||||||||| |||||| |    
T  26576150 ataaataaaggtcaaatactatgatatc-ttgttgtagaactttttctaatgacataaattgctcaagttagatgtttatatatgtattttaattttcat 26576052  T
Q  450 tttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    |||||| ||||| || |||| |||| |||||||||       ||||||||||||||||||||||||||||||||||||||    
T  26576051 tttagatcgtctttaaataaattaaaatatatgta------acggtgtcctatattttttacattagcggtgtcgacgtg 26575978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 250 - 515
Target Start/End: Complemental strand, 27004227 - 27003960
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgat---agtaga 346  Q
    |||||||||||||  || ||| |||| |||||| |||||||||||||||||  |||||| ||||||||||| ||||||||| ||| ||  |   ||||||    
T  27004227 agatacaagagttgtatatgttttgaaaaatgttgatcaattaggggttatgtacattatagttgattatatcatttttagtttttttttttacagtaga 27004128  T
Q  347 tgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatttt 446  Q
    ||||||||||||||||||||||||||||||||| |||  |||| ||||| |||||||||||||||||||| ||||||| |||| ||||||||||  ||||    
T  27004127 tgaataaataaaggtcaaatactatgatatctt-gttggagaactttttttaatgaaataaatttctcaagttagatgtttatatatgtattttagtttt 27004029  T
Q  447 cgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacatta 515  Q
    | ||||||||||||| || |||| |||||||||| ||||| ||||||||||||||||||||||||||||    
T  27004028 cattttagaccgtctttaaataaattaacatatacgtagcggtgtcggtgtcctatattttttacatta 27003960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 324 - 529
Target Start/End: Original strand, 32200870 - 32201074
Alignment:
Q  324 tttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagat 423  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||| ||||| ||||||    
T  32200870 tttttagcttttttgatagtagatgaataaataaaggtcaaatactatgatatctt-gttgtagaactttttctaatgacataaattgctcaagttagat 32200968  T
Q  424 gcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtc 523  Q
    | |||| |||||||||| |||||| ||||||||||||| || |||| ||||||||||| ||   ||||||||||||||||||||||||||||||||||||    
T  32200969 gtttatatatgtattttaattttcattttagaccgtctttaaataaattaacatatatttaatggtgtcggtgtcctatattttttacattagcggtgtc 32201068  T
Q  524 gacgtg 529  Q
    ||||||    
T  32201069 gacgtg 32201074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 250 - 525
Target Start/End: Original strand, 34409554 - 34409830
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttct-tgatagtagatg 348  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||  ||||||     
T  34409554 agatacaagagttacatatgttttgagaaatgttgatcaattaggggttatagacattatagttgattatatcatttttagctttttctgacggtagata 34409653  T
Q  349 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttga-ttttc 447  Q
    ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| | |||||| ||||| ||||||| |||| |||||||||| | ||||     
T  34409654 aataaataaaggtcaaatactataatatc-ttgttgtagaactttttctaatg-actaaattgctcaagttagatgtttatatatgtattttaatttttt 34409751  T
Q  448 gttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctata-ttttttacattagcggtgtcga 525  Q
     |||| ||||||||||| |||| |||| |||||| ||   |||||||||||||| | ||||||||||||||||||||||    
T  34409752 attttggaccgtctataaataaattaatatatatctaatggtgtcggtgtcctagatttttttacattagcggtgtcga 34409830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 256 - 522
Target Start/End: Original strand, 44649945 - 44650202
Alignment:
Q  256 aagagttacatgtgtgttgagaaatgtagatcaattagggg-ttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaa 354  Q
    |||||||| || |||||||| |||||| ||||||||||||| ||||||| |||||||||||||| |||||||||| |||| |||||||||||||||||||    
T  44649945 aagagttatatatgtgttgaaaaatgttgatcaattaggggcttatagaaattaaagttgattacaacatttttaacttttttgatagtagatgaataaa 44650044  T
Q  355 taaaggtcaaatactatgatatctttgttttagaaatttttct-aatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgtttta 453  Q
    |||||||||||| ||||| |||| |||||||| || ||||| | ||||||||||||| ||||| ||| |||||||||||||||          | |||||    
T  44650045 taaaggtcaaattctatggtatc-ttgttttataattttttttcaatgaaataaattgctcaatttatatgcttatgtatgta----------catttta 44650133  T
Q  454 gaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgt 522  Q
    |||  | |||| |||| |||| ||||||||||| |||||  |||||||||||||||| |||| ||||||    
T  44650134 gactatttataaataaattaatatatatgtagcagtgtcaatgtcctatattttttatattaacggtgt 44650202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 305 - 528
Target Start/End: Complemental strand, 13037442 - 13037220
Alignment:
Q  305 attaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaa 404  Q
    |||| |||||| |||| | ||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||| ||||| |    
T  13037442 attatagttgactatatcgtttttaatttttttgatagtagatgaataaataaagatcaaatactatgatatctt-gttgtagaactttttcaaatgaca 13037344  T
Q  405 taaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatat 504  Q
    |||||| ||||| ||||||| || | |||| ||||| |||||| |||||| | |||| || |||| |||||||||||||| |  ||||||| || |||||    
T  13037343 taaattgctcaagttagatgtttgtatatgcattttaattttcattttagcctgtctttaaataaattaacatatatgtaacgatgtcggtatcttatat 13037244  T
Q  505 tttttacattagcggtgtcgacgt 528  Q
    |||||||||| ||| |||| ||||    
T  13037243 tttttacattggcgatgtcaacgt 13037220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 250 - 453
Target Start/End: Original strand, 4748053 - 4748255
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttataga--cattaaagttgattataacatttttagctttcttgatagtagat 347  Q
    |||| ||||||||||||||||  || ||||||| ||||| | ||||||||||||  ||||||||||||||| | ||||||||| ||  |  |||| ||||    
T  4748053 agatccaagagttacatgtgt--tgtgaaatgttgatcactgaggggttatagagacattaaagttgattacagcatttttagtttgttcaatagaagat 4748150  T
Q  348 gaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttc 447  Q
    ||||||||||||||||||||||||  || ||| ||||||||| |||||| ||||||||||||| ||||| ||||| |   |||||| |||||||||||||    
T  4748151 gaataaataaaggtcaaatactatcgtaactt-gttttagaactttttccaatgaaataaattgctcaagttagaagtacatgtatctattttgattttc 4748249  T
Q  448 gtttta 453  Q
     |||||    
T  4748250 atttta 4748255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 250 - 529
Target Start/End: Complemental strand, 17651447 - 17651170
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    |||| ||||||||| | |||||| || |||||| ||||||  || |||||||||||||||||||||||| ||| | ||||  ||| |  ||||||||||     
T  17651447 agattcaagagttaaaggtgtgt-gaaaaatgttgatcaacgagaggttatagacattaaagttgattacaacgtatttaagtttttcaatagtagatgg 17651349  T
Q  350 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgt 449  Q
    ||||||||||| |||||| |||  || ||| ||| ||||| || || |||||||||||||| ||||| |||||||| ||||||||||||||| ||||       
T  17651348 ataaataaaggccaaatattattgtaactt-gttatagaacttcttgtaatgaaataaattgctcaagttagatgcatatgtatgtattttggtttttaa 17651250  T
Q  450 tttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    |||||| | | |||| |||| |||| |||||   ||| ||||| || |||||| ||||||| ||||||| ||||||||||    
T  17651249 tttagatcttatataaataaattaatatatagccagcggtgtcagtatcctatgttttttatattagcgatgtcgacgtg 17651170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 391 - 540
Target Start/End: Complemental strand, 41849068 - 41848919
Alignment:
Q  391 tttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtg 490  Q
    ||||| |||||||||||| | ||||| |||||| | |||||||||||||||||| ||  ||||||   | |||| |||| |||| |||||  |||| |||    
T  41849068 tttttttaatgaaataaagtgctcaagttagattcatatgtatgtattttgattctcaatttagatattttataaataaattaatatatagatagcggtg 41848969  T
Q  491 tcggtgtcctatattttttacattagcggtgtcgacgtgccagtgtcgtg 540  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  41848968 tcggtgtcctatattttttacattagcggtgtcgatgtgtcagtgtcgtg 41848919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 353 - 519
Target Start/End: Original strand, 16661253 - 16661418
Alignment:
Q  353 aataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgtttt 452  Q
    ||||||||| |||||||||  |||||| ||||||||| ||||| |||| ||||||||| ||||| |||||| |  ||||||||||| ||||| ||  |||    
T  16661253 aataaaggttaaatactatcctatctt-gttttagaactttttttaataaaataaattgctcaagttagatacacatgtatgtattctgattctcaattt 16661351  T
Q  453 agaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcgg 519  Q
    ||| | | |||| || | |||| ||||||||||| || ||||||||| || ||| ||||||||||||    
T  16661352 agatcttttatacatgaattaatatatatgtagcggtatcggtgtccaatgtttattacattagcgg 16661418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 538
Target Start/End: Original strand, 4748257 - 4748319
Alignment:
Q  476 atatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtgccagtgtcg 538  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  4748257 atatatatagcagtgtcggtgtcctatattttttacattagcggtgtcgatgtgtccgtgtcg 4748319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 18724894 - 18724983
Alignment:
Q  461 tatagataatttaacatatatgtagctgtgtcggtgtcctata-ttttttacattagcggtgtcgacgtgccagtgtcgtgtcaagtgtc 549  Q
    |||| |||| |||| ||||| ||||| |||||||||||||||  |||||||||||| ||||||||||||  ||||||||| |||||||||    
T  18724894 tataaataaattaatatataggtagcggtgtcggtgtcctatggttttttacattatcggtgtcgacgtatcagtgtcgtatcaagtgtc 18724983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 483
Target Start/End: Complemental strand, 40279879 - 40279805
Alignment:
Q  407 aatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgt 483  Q
    |||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||  || |||| |||||||||||||    
T  40279879 aattgctcaagttagatgcttatgtatgtcttttgattttcattttagaccgtc--taaataaattaacatatatgt 40279805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 15990041 - 15990123
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaa-ttaggggttatagacattaaagttgattataacatttttagc 331  Q
    ||||| ||||||||||| ||||||||||||||| || ||| || ||||||||||| ||||||||| || | ||||||||||||    
T  15990041 agatataagagttacatatgtgttgagaaatgttgaccaatttgggggttatagaaattaaagttaatcacaacatttttagc 15990123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 307
Target Start/End: Complemental strand, 13039165 - 13039011
Alignment:
Q  153 tggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcaga 252  Q
    ||||||||||||| | |||| |||||||||||||  |||  ||||  ||||||||||||||||||||         | ||| |||||  || | |  |||    
T  13039165 tggtgtccgacacatttataacactcatatgagttgtgtcagacagctcagacaaatatctaaaacaatttttttatctcttgcttccgcacaccataga 13039066  T
Q  253 tacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacatt 307  Q
    |||||||||||||| |||  |||||||||| |||||||||| ||||||| |||||    
T  13039065 tacaagagttacatatgttatgagaaatgttgatcaattagtggttataaacatt 13039011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 34409459 - 34409524
Alignment:
Q  154 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaaca 219  Q
    ||||||||||||||||||| |||||||| ||||  ||||| |||| ||| |||| |||||||||||    
T  34409459 ggtgtccgacacctatataacactcatacgagttgtgttgaacaactcaaacaactatctaaaaca 34409524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 41849420 - 41849351
Alignment:
Q  4 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactcc 73  Q
    |||||||||||| |||||| ||| | ||| |||||||| ||||| ||||||||| |||||| ||||||||    
T  41849420 ctatgaagcacggacacctctagaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacactcc 41849351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 41849286 - 41849228
Alignment:
Q  151 actggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaat 209  Q
    |||||||||||||||||||||| |||| ||||||| | ||| |||||| ||| ||||||    
T  41849286 actggtgtccgacacctatataacacttatatgaggcgtgtcggacaactcaaacaaat 41849228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 17651536 - 17651476
Alignment:
Q  154 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatcta 214  Q
    |||||||||||| |||||| |||| ||||||| | ||| |||||| | |||||||||||||    
T  17651536 ggtgtccgacacttatataacacttatatgaggcgtgtcggacaacttagacaaatatcta 17651476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 32200608 - 32200660
Alignment:
Q  2 tcctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacg 54  Q
    |||||||||||||| |||||| ||| ||||| |||||||| ||||| ||||||    
T  32200608 tcctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacacg 32200660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 444
Target Start/End: Original strand, 38783673 - 38783776
Alignment:
Q  340 tagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattt 439  Q
    ||||||||| ||||||||| |||||||| | |  |||||| ||| || || ||||| |||||||||||||| | | |  ||||||  |||||||||||||    
T  38783673 tagtagatggataaataaatgtcaaatattgttgtatctt-gttataaaactttttttaatgaaataaattgccctagatagatgtatatgtatgtattt 38783771  T
Q  440 tgatt 444  Q
    |||||    
T  38783772 tgatt 38783776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 8e-78; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 250 - 529
Target Start/End: Complemental strand, 28421230 - 28420952
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    ||||||||||||||||| | | ||||||||| | |||||||||| |||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||    
T  28421230 agatacaagagttacatatattttgagaaatcttgatcaattagtggttatagacattatagttgattatatcgtttttagcttttttgatagtagatga 28421131  T
Q  350 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgt 449  Q
    |||||||||||||||||  ||||||||| ||||| || || |||||||||||| ||||||| ||||| ||| ||| |||| |||||||||| |||||| |    
T  28421130 ataaataaaggtcaaatcatatgatatc-ttgttgtaaaactttttctaatgacataaattgctcaagttaaatgtttatatatgtattttaattttcat 28421032  T
Q  450 tttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    |||||||||||| || |||| ||||||||||||||   |||||||||||||||||||| ||||||||||||||| |||||    
T  28421031 tttagaccgtctttaaataaattaacatatatgtaatggtgtcggtgtcctatattttctacattagcggtgtcaacgtg 28420952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 250 - 529
Target Start/End: Original strand, 15131941 - 15132218
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    ||||||| ||||||||| ||| || |||||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||| |    
T  15131941 agatacaggagttacatatgtttttagaaatattgatcaattaggggttatagacattatagttgattatatcatttttagctttttcgatagtagataa 15132040  T
Q  350 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgt 449  Q
    |||||||||| ||||||||||||||||| ||| | ||||| ||||| | ||| |||||||| ||||| |||||||  ||| |||||||||| |||||| |    
T  15132041 ataaataaagatcaaatactatgatatc-ttgctgtagaactttttatcatg-aataaattgctcaagttagatgtctatatatgtattttaattttcat 15132138  T
Q  450 tttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    |||| || |||| |  |||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||||    
T  15132139 tttaaactgtctttgaataaattaacatatatgtagcggtgttggtgtcctatatattttacattagcggtgtcaacgtg 15132218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 261 - 527
Target Start/End: Complemental strand, 44502469 - 44502204
Alignment:
Q  261 ttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaagg 360  Q
    |||||| ||| ||||||||||| |||  |||||||||||||||||||| |||||||||||  ||||||| |||| ||||||| |||||||||||||||||    
T  44502469 ttacatatgttttgagaaatgttgattgattaggggttatagacattatagttgattatattatttttaacttttttgatagcagatgaataaataaagg 44502370  T
Q  361 tcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtc 460  Q
    ||||||| ||||||||| ||||| ||||| ||||| | |||||||||||| ||||| ||| ||| |||| |||||||| |  ||||||||||||||  ||    
T  44502369 tcaaatagtatgatatc-ttgttgtagaactttttatgatgaaataaattgctcaagttaaatgtttatatatgtattctatttttcgttttagactttc 44502271  T
Q  461 tatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacg 527  Q
    | || |||| |||| ||||||||| | ||||||||||||||||||||||||||||||  ||||||||    
T  44502270 tttaaataaattaaaatatatgtaacagtgtcggtgtcctatattttttacattagcaatgtcgacg 44502204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 317 - 525
Target Start/End: Original strand, 15850496 - 15850703
Alignment:
Q  317 tataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaa 416  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| |||||||| || ||||||||||||||||| || |||||    
T  15850496 tataacatttttagcttttttgatagtagatgaataaataaatgtcaaatactgtgatatc-ttgttttataactttttctaatgaaataatttgctcaa 15850594  T
Q  417 cttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattag 516  Q
     |||||| ||||| ||||||||||||||||| ||||||||  |||||| |||| |||| |||||  ||   ||||||||||||||||||||||||| ||     
T  15850595 attagatacttatatatgtattttgattttcattttagactatctataaataaattaatatatacataatggtgtcggtgtcctatattttttacactaa 15850694  T
Q  517 cggtgtcga 525  Q
    | |||||||    
T  15850695 cagtgtcga 15850703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 245 - 529
Target Start/End: Complemental strand, 1226250 - 1225967
Alignment:
Q  245 atcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggtt-atagacattaaagttgattataacatttttagctttcttgatagt 343  Q
    |||| |||||||||||||| || |||||||||||||||  ||||||||| |||| ||||| |||||||||||||| ||||||||||  ||| ||||||||    
T  1226250 atcgtagatacaagagttaaatatgtgttgagaaatgttaatcaattagaggtttatagaaattaaagttgattacaacatttttaaattt-ttgatagt 1226152  T
Q  344 agatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 443  Q
    |||||||||||||||| ||||||||| || |||||| |||||| || |||||  ||||||||||||| || || ||| ||| |||  |||||||||||||    
T  1226151 agatgaataaataaagatcaaatactctggtatctt-gttttataacttttttcaatgaaataaattgcttaatttatatgtttacatatgtattttgat 1226053  T
Q  444 tttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    |||| ||||||||| |||||| |||| |||  |||||||| |  ||||| ||||| || || ||||| ||||  ||||||||||||    
T  1226052 tttcattttagaccctctataaataaattactatatatgtggtggtgtcagtgtcgtaaatattttatattaatggtgtcgacgtg 1225967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 323 - 515
Target Start/End: Complemental strand, 37855276 - 37855085
Alignment:
Q  323 atttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttaga 422  Q
    ||||||| | || |||||||||||||||||||||||||| ||||||||| ||||||| |||  | || ||||||| |||||||||||||||||| |||||    
T  37855276 atttttaacctttttgatagtagatgaataaataaaggttaaatactattatatctt-gttgcataactttttctcatgaaataaatttctcaaattaga 37855178  T
Q  423 tgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacatta 515  Q
    || |||| |||||||| | |||||  ||||||||||||| || |||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  37855177 tgtttatatatgtattataatttttattttagaccgtctttaaataaatgaacatatatgtagcggtgtcggtgtcctatattttttacatta 37855085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 274 - 444
Target Start/End: Original strand, 18393548 - 18393717
Alignment:
Q  274 gagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatga 373  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||| ||| ||||||  ||| ||||||||||||| ||||||||||||||||||||||      
T  18393548 gagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatactattt 18393647  T
Q  374 tatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatt 444  Q
    |||| ||||| || || ||||| |||| |||||||||  |||| ||| |||| |||||||||||| |||||    
T  18393648 tatc-ttgttataaaactttttttaataaaataaattgttcaagttaaatgcatatgtatgtattatgatt 18393717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 251 - 525
Target Start/End: Original strand, 18603044 - 18603304
Alignment:
Q  251 gatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaa 350  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||   || ||||||| | ||||||||||||||||||||||| ||                 
T  18603044 gatacaagagttacatatgttttgagaaatgttgatcaattagggtgaattgacattacaattgattataacatttttagctttttt------------- 18603130  T
Q  351 taaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgtt 450  Q
    ||||||||| |||||||||| |||||| | |||||| || ||||||||||||||||| || || || ||||||| |||  ||||||||| ||||||  ||    
T  18603131 taaataaagatcaaatactacgatatcgt-gttttaaaactttttctaatgaaataacttgcttaagttagatgtttagatatgtatttggatttttatt 18603229  T
Q  451 ttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcga 525  Q
    ||||||    |||| |||| ||||||| |||||||  ||| ||||||||||||||||||||| || |||||||||    
T  18603230 ttagacatgatataaataaattaacatgtatgtagaggtgccggtgtcctatattttttacactaacggtgtcga 18603304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 277 - 522
Target Start/End: Complemental strand, 27401985 - 27401741
Alignment:
Q  277 aaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatat 376  Q
    |||||| ||||||  ||||||||||||||||||||||||||| ||| |||||   | | |  |||||||||| ||||||||||| ||||| ||||  |||    
T  27401985 aaatgttgatcaacgaggggttatagacattaaagttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattctattgtat 27401886  T
Q  377 ctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaaca 476  Q
    ||| ||| || || ||||| |||||||||||||| ||||| ||||||||  |||||| |||||||||| ||  || ||||  | |||| |||| |||| |    
T  27401885 ctt-gttatataactttttttaatgaaataaattgctcaagttagatgcagatgtatatattttgattctcaattgagacattttataaataaattaata 27401787  T
Q  477 tatatgtagctgtgtcggtgtcctatattttttacattagcggtgt 522  Q
    ||||  |||| || | || ||||||| |||||||||||||||||||    
T  27401786 tatagatagcggtattggcgtcctatgttttttacattagcggtgt 27401741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 529
Target Start/End: Complemental strand, 13097604 - 13097355
Alignment:
Q  273 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 372  Q
    |||||||||| ||||||  || |||||| ||||||||||||||||| |||||||||   ||| |  |||||||||||||||||||     |||| | ||     
T  13097604 tgagaaatgttgatcaacaagaggttatggacattaaagttgattaaaacattttttaatttttcaatagtagatgaataaataa-----aaat-cgatc 13097511  T
Q  373 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataattt 472  Q
    | ||  ||||| | ||| ||||| |||||||||||||| ||  | |||||||| |||||||||||||||||| ||  ||||||   | |||| |||| ||    
T  13097510 aaat-attgttatggaactttttttaatgaaataaattgcttgagttagatgcatatgtatgtattttgattctcaatttagatattttataaataaatt 13097412  T
Q  473 aacatatatg-tagctgtgtcggtgtccta-tattttttacattagcggtgtcgacgtg 529  Q
    |  ||||||| |||  |||||| ||||||| | |||||||||||||||||| |||||||    
T  13097411 a--atatatgatagtggtgtcgctgtcctatttttttttacattagcggtgccgacgtg 13097355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 416
Target Start/End: Original strand, 2889764 - 2889872
Alignment:
Q  307 taaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaata 406  Q
    ||||||||| || ||| ||||||  ||| | ||||||||||| ||||||||||| ||||||||||  |||| ||||| ||||  ||||| ||||||||||    
T  2889764 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatc-ttgttatagacctttttttaatgaaata 2889862  T
Q  407 aatttctcaa 416  Q
    |||| |||||    
T  2889863 aattgctcaa 2889872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 3145371 - 3145263
Alignment:
Q  307 taaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaata 406  Q
    ||||||||| || ||| ||||||  ||| | ||||||||||| ||||||||||| ||||||||||  |||| ||||| ||||  ||||| ||||||||||    
T  3145371 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatc-ttgttatagacctttttttaatgaaata 3145273  T
Q  407 aatttctcaa 416  Q
    |||| |||||    
T  3145272 aattgctcaa 3145263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 526
Target Start/End: Complemental strand, 44508477 - 44508417
Alignment:
Q  466 ataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgac 526  Q
    |||| ||||||| |||||||| ||||| ||||||||||||||||| |||| ||||||||||    
T  44508477 ataaattaacatttatgtagcggtgtctgtgtcctatattttttagattaacggtgtcgac 44508417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 537
Target Start/End: Complemental strand, 3159798 - 3159743
Alignment:
Q  482 gtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtgccagtgtc 537  Q
    ||||| ||||||||||||||| |||||||||||||||||||  ||||| |||||||    
T  3159798 gtagcagtgtcggtgtcctatgttttttacattagcggtgttaacgtgtcagtgtc 3159743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 15131843 - 15131905
Alignment:
Q  154 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaa 216  Q
    ||||||||||||||||||| ||||||||||||   ||| | |||| |||||||||||||||||    
T  15131843 ggtgtccgacacctatataacactcatatgagcagtgtcgaacaactcagacaaatatctaaa 15131905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 423
Target Start/End: Complemental strand, 3159963 - 3159848
Alignment:
Q  307 taaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaata 406  Q
    |||||||||||| ||| | ||||  ||| | |||| |||||| ||||||||||| ||||||||||  || | ||||| ||||  ||||| ||||||||||    
T  3159963 taaagttgattacaacgtgtttaaatttttcgatattagatggataaataaaggccaaatactattgtaac-ttgttatagacctttttttaatgaaata 3159865  T
Q  407 aatttctcaacttagat 423  Q
    |||| ||||| ||||||    
T  3159864 aattgctcaagttagat 3159848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 18602813 - 18602880
Alignment:
Q  3 cctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacac 70  Q
    ||||||||||||| ||| || ||| |||||| ||||| | ||||| ||||||| ||||||||||||||    
T  18602813 cctatgaagcacggacatctctaggactagctgtgtcacggtgtccgacacgctttggtgtctgacac 18602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 31772606 - 31772527
Alignment:
Q  275 agaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaa 354  Q
    |||||||| ||||||  ||||||||   |||||||||||||||| ||| ||||||||||| ||||  ||||||| |||||    
T  31772606 agaaatgttgatcaacaaggggttaccaacattaaagttgattacaacgtttttagcttttttgacggtagatggataaa 31772527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 431
Target Start/End: Complemental strand, 2796326 - 2796200
Alignment:
Q  307 taaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttaga---aatttttctaatgaa 403  Q
    |||||||||||| ||| | ||||  ||| | ||||||||||| ||||||||||| ||||||||||  || | ||||| ||||     ||||| |||||||    
T  2796326 taaagttgattacaacgtatttaaatttttcgatagtagatggataaataaaggccaaatactattgtaac-ttgttatagaccttttttttttaatgaa 2796228  T
Q  404 ataaatttctcaacttagatgcttatgt 431  Q
    ||||||| ||||| |||||||| |||||    
T  2796227 ataaattgctcaagttagatgcatatgt 2796200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15131731 - 15131784
Alignment:
Q  1 ttcctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacg 54  Q
    ||||||||||||||| |||||| ||| ||||| |||||||| ||||| ||||||    
T  15131731 ttcctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacacg 15131784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 28867337 - 28867284
Alignment:
Q  391 tttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatt 444  Q
    ||||| |||||||||||||| || || |||||||| ||| ||||||||||||||    
T  28867337 tttttttaatgaaataaattacttaagttagatgcatatatatgtattttgatt 28867284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 28869900 - 28869847
Alignment:
Q  391 tttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatt 444  Q
    ||||| ||||||||||||||  | || |||||||| ||||||||||||||||||    
T  28869900 tttttttaatgaaataaattatttaagttagatgcatatgtatgtattttgatt 28869847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 423
Target Start/End: Original strand, 2875441 - 2875524
Alignment:
Q  339 atagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagat 423  Q
    |||||||||| ||||||||||| ||||||||||  |||| ||||| || |  ||||| ||||||| |||||| ||||| ||||||    
T  2875441 atagtagatggataaataaaggccaaatactattgtatc-ttgttataaacctttttttaatgaactaaattgctcaagttagat 2875524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 522
Target Start/End: Original strand, 31119324 - 31119352
Alignment:
Q  494 gtgtcctatattttttacattagcggtgt 522  Q
    |||||||||||||||||||||||||||||    
T  31119324 gtgtcctatattttttacattagcggtgt 31119352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 235 - 508
Target Start/End: Original strand, 37338721 - 37338993
Alignment:
Q  235 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagcttt 334  Q
    ||||| ||||| || ||||||||||||||||| ||  ||||||||||| |||||||||||| || || |||||||||||||| |||||||||||| ||||    
T  37338721 gcttccacataccgtagatacaagagttacatatgctttgagaaatgttgatcaattagggattttaaacattaaagttgataataacatttttaacttt 37338820  T
Q  335 cttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatg 434  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||| | ||  |||||||||||||||| || ||||| |||||||||||| ||||    
T  37338821 tttgatagtagatgaataaataaaggtcaaatactatgatatc-ttgtttgataacattttctaatgaaataatttgctcaagttagatgcttatatatg 37338919  T
Q  435 tattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttt 508  Q
    |||||||||||||  ||||||| ||||||| |||| |||||||||||||| | ||| ||||||||| |||||||    
T  37338920 tattttgattttcaatttagactgtctataaataaattaacatatatgtaacggtgccggtgtcctgtattttt 37338993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 271 - 526
Target Start/End: Complemental strand, 27616494 - 27616239
Alignment:
Q  271 gttgagaaatgtagatcaattagggg-ttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatact 369  Q
    |||||||||||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||||    
T  27616494 gttgagaaatgatggtcaattagggggttatagacattaaagttgattataacatttttagcttttctgatagtagatgtataaataaaagtcaaatact 27616395  T
Q  370 atgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataa 469  Q
    |||||||||| ||||||||| || ||||||| ||||||| | ||||| | ||||||||||||| ||| |||||||||| |||||||||  ||||| ||||    
T  27616394 atgatatctt-gttttagaacttgttctaattaaataaactgctcaagtaagatgcttatgtacgtactttgattttcattttagaccacctataaataa 27616296  T
Q  470 tttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgac 526  Q
     |||||||| ||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  27616295 attaacatacatgtagcggtgtcggtgtcctgtattttttacattaacggtgtcgac 27616239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 250 - 520
Target Start/End: Complemental strand, 46533043 - 46532774
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    ||||||||||| ||||| | | ||||| ||||| |||||||||||||||||| |||||| | ||||||||||||||||||||||| |||| || || |||    
T  46533043 agatacaagagctacatatattttgaggaatgttgatcaattaggggttataaacattacaattgattataacatttttagcttttttgacagcaggtga 46532944  T
Q  350 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgt 449  Q
    ||||| || |||||||||||| | ||||||  |||||||| |||||| |||||||||| || ||||| |||||||||||| |||||||||| |||||  |    
T  46532943 ataaacaatggtcaaatactacgttatctta-ttttagaactttttcaaatgaaataacttcctcaagttagatgcttatatatgtattttaatttttat 46532845  T
Q  450 tttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggt 520  Q
     ||| |||  ||||| |||| |||||||||||||||| ||||| |||| |||||||||||| |||||||||    
T  46532844 cttaaaccacctataaataaattaacatatatgtagcagtgtcagtgttctatattttttaaattagcggt 46532774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 310 - 523
Target Start/End: Complemental strand, 22290991 - 22290779
Alignment:
Q  310 agttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaat 409  Q
    |||||||||||  |||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||    
T  22290991 agttgattatataatttttagcttttttgatagtagattaataaataaaggtcaaatacaatgatatc-ttgttgtagaactttttttaatgaaataaat 22290893  T
Q  410 ttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatatttttt 509  Q
    |  | || |||  || |||| |||||| |||  ||||| |||||||| |||| || | || |||||||| ||||||  || |||||||||||||||||||    
T  22290892 tgtttaagttaattgtttatatatgtaatttatttttccttttagactgtctttaaacaaattaacataaatgtagtggtatcggtgtcctatatttttt 22290793  T
Q  510 acattagcggtgtc 523  Q
    | ||||| ||||||    
T  22290792 aaattagtggtgtc 22290779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 252 - 493
Target Start/End: Original strand, 32716489 - 32716728
Alignment:
Q  252 atacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaat 351  Q
    ||||||||||||||| | | ||||||||| | ||| ||| |||| |||||||||||||| ||||||  | |||||||| |||| | |||||| |||||||    
T  32716489 atacaagagttacatatatattgagaaattttgat-aatgagggattatagacattaaaattgattgcaccatttttaactttttcgatagtggatgaat 32716587  T
Q  352 aaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttt 451  Q
    |||||||| |||||||||||  |||| ||||||||||| ||||| |||| ||| |||||  |||| ||||||    || ||||||||||||||||| |||    
T  32716588 aaataaagatcaaatactattgtatc-ttgttttagaactttttttaataaaacaaattattcaagttagatatacatatatgtattttgattttcattt 32716686  T
Q  452 tagaccgtctatagataatttaacatatatgtagctgtgtcg 493  Q
    |||||  |||||| || | |||| ||||||||||| ||||||    
T  32716687 tagacaatctataaattaattaatatatatgtagcagtgtcg 32716728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 313 - 436
Target Start/End: Original strand, 45215999 - 45216121
Alignment:
Q  313 tgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttc 412  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||| || || ||||| |||||||||||| ||||||| |    
T  45215999 tgattatatcatttttagcttttttgacagtagatgaataaataaaggtcaaataatatgacatc-ttattgtagaactttttctaatgacataaattgc 45216097  T
Q  413 tcaacttagatgcttatgtatgta 436  Q
    |||| |||| || |||| ||||||    
T  45216098 tcaagttagttgtttatatatgta 45216121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 285 - 441
Target Start/End: Original strand, 11809286 - 11809440
Alignment:
Q  285 atcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttt 384  Q
    |||||| |||||| |||||||||||| ||||||| ||| ||||||  ||| ||||  |||||||||  |||||||| ||||||||||  |||| |||||     
T  11809286 atcaatgaggggtcatagacattaaatttgattacaacctttttaaattttttgacggtagatgaagtaataaaggccaaatactattgtatc-ttgtta 11809384  T
Q  385 tagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg 441  Q
    || |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||    
T  11809385 tataaattttt-taatgaaataaattgctcaagttagaagcatatgtatgtattttg 11809440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 441
Target Start/End: Original strand, 11820525 - 11820691
Alignment:
Q  273 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 372  Q
    |||||||||| ||||||  | |||||||||||||||||| |||||| ||||||||||   || || ||||||||| ||||||||||| |||||| ||||     
T  11820525 tgagaaatgttgatcaacgaagggttatagacattaaagatgattacaacatttttaaaatttttaatagtagataaataaataaagctcaaatgctatt 11820624  T
Q  373 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg 441  Q
     |||  ||||  ||||| |||||  ||||||||||||| ||||| |||||||| |||||||||||||||    
T  11820625 gtat-gttgtcatagaacttttt-gaatgaaataaattgctcaagttagatgcatatgtatgtattttg 11820691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 44572487 - 44572560
Alignment:
Q  298 tatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactat 371  Q
    |||| |||||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44572487 tatatacattacaattgattatatcatttttagcttttttgatagtagatgaataaataaaggtcaaatactat 44572560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 426 - 512
Target Start/End: Original strand, 44572565 - 44572651
Alignment:
Q  426 ttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttaca 512  Q
    |||| ||||||||||||||||| |||||||||  || || |||| |||||||||||||||| |||||||| ||||||||||||||||    
T  44572565 ttatatatgtattttgattttcattttagaccaactttaaataaattaacatatatgtagcggtgtcggtttcctatattttttaca 44572651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 410
Target Start/End: Complemental strand, 6439914 - 6439769
Alignment:
Q  268 tgtgttgagaaatgtagatcaattaggggttatagacattaa----agttgattataacatttttagctttcttgatagtagatgaataaataaaggtca 363  Q
    ||||||||||||||| ||||| | ||| ||||||||||||||    ||||||||| |||||||||| |||| | |||||||| |||||||||| | ||||    
T  6439914 tgtgttgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatgtca 6439815  T
Q  364 aatactatgatatctttgttttagaaatttttctaatgaaataaatt 410  Q
    ||||||||  |||| |||| ||| || |||||  |||||||||||||    
T  6439814 aatactatcgtatc-ttgtgttataacttttttcaatgaaataaatt 6439769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 529
Target Start/End: Original strand, 11812611 - 11812752
Alignment:
Q  379 ttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacata 478  Q
    ||||| |||||||||||  ||||||||||||| ||||| |||||||| ||||||||||||||  ||  |  ||||||       || |||| |||| |||    
T  11812611 ttgttatagaaattttt--aatgaaataaattgctcaaattagatgcatatgtatgtatttttcttcccaatttaga-------taaataaattaatata 11812701  T
Q  479 tatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    || ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  11812702 taggtagctgtgtcggtgtcctatgttttttacattagcggtgtcaacgtg 11812752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 444
Target Start/End: Complemental strand, 27994052 - 27993898
Alignment:
Q  292 aggggttatagacattaaagttgattataa---catttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttaga 388  Q
    |||| ||||||||||||||||| |||| ||   ||||||||  ||| | ||| ||||||| |||||||||| |||| | ||||  |||||| ||| ||||    
T  27994052 agggtttatagacattaaagtttattacaaatgcatttttaaatttttcgatggtagatggataaataaagatcaattgctattgtatctt-gttataga 27993954  T
Q  389 aatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatt 444  Q
    | ||| | |||||||||||||| ||||| ||| |||| ||||||||||||||||||    
T  27993953 actttatttaatgaaataaattgctcaagttaaatgcatatgtatgtattttgatt 27993898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 342 - 511
Target Start/End: Original strand, 44182664 - 44182831
Alignment:
Q  342 gtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg 441  Q
    |||||| ||||||||||||||| |||||||||||| ||| ||||||||  |||| | ||||||||||||  |||   |||||  |||| |||||||||||    
T  44182664 gtagataaataaataaaggtcatatactatgatat-tttattttagaatattttttgatgaaataaattgttcatactagatatttatatatgtattttg 44182762  T
Q  442 attttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttac 511  Q
    |||||  ||||||| |||||||| |||| || | |||| |||||| | ||  ||| ||||||||||||||    
T  44182763 atttttattttagatcgtctataaataaatt-atatatgtgtagcagcgttagtggcctatattttttac 44182831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 441
Target Start/End: Original strand, 11816926 - 11817013
Alignment:
Q  352 aaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg 441  Q
    ||||||||||||||||| ||  |||||| ||| || |||||||| |||||||||||||| ||||  ||||||||||||||||||||||||    
T  11816926 aaataaaggtcaaatacgattgtatctt-gttatataaattttt-taatgaaataaattgctcatgttagatgcttatgtatgtattttg 11817013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 529
Target Start/End: Original strand, 45216113 - 45216166
Alignment:
Q  476 atatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    ||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||    
T  45216113 atatatgtaacggtgtccgtgtcttatattttttacattagcggtgtcgacgtg 45216166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 441
Target Start/End: Original strand, 11810979 - 11811077
Alignment:
Q  341 agtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 440  Q
    ||||||| ||| ||||||||||||||| |||  |||||| |||  | |||||||| |||||||||||||| ||||| ||||| || ||||||||||||||    
T  11810979 agtagataaattaataaaggtcaaatattattgtatctt-gttagataaattttt-taatgaaataaattgctcaagttagaggcatatgtatgtatttt 11811076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 529
Target Start/End: Original strand, 11814414 - 11814642
Alignment:
Q  292 aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaat 391  Q
    |||||||||||||||||| |||||||| | ||||||||  ||| ||||||||| || ||  |||| |||||||||| | |  ||||  ||||   |||||    
T  11814414 aggggttatagacattaatgttgattacaccatttttaatttttttgatagtatataaaataatagaggtcaaatattgttgtatc-gtgttaatgaaat 11814512  T
Q  392 ttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgt 491  Q
     ||| | |||||||||||| ||||  |||||||| ||| ||||||||||| || ||  |||||       ||| || | |||| ||||| ||| | ||||    
T  11814513 attt-tcatgaaataaattgctcatattagatgcatatttatgtattttgcttctcaatttag-------ataaatcacttaatatataggtaacagtgt 11814604  T
Q  492 cggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    ||||||||||| |||||||||||| ||||||| |||||    
T  11814605 cggtgtcctatgttttttacattaacggtgtcaacgtg 11814642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 22291241 - 22291172
Alignment:
Q  4 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactcc 73  Q
    |||||||||||| | |||| ||| ||||| | |||||||||||| ||||||||| |||||| ||||||||    
T  22291241 ctatgaagcacggaaacctctaggactaggcatgtcgcagtgtccgacacgcgtcggtgtccgacactcc 22291172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 523
Target Start/End: Original strand, 11815708 - 11815748
Alignment:
Q  483 tagctgtgtcggtgtcctatattttttacattagcggtgtc 523  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  11815708 tagcagtgtcagtgtcctatattttttacattagcggtgtc 11815748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 525
Target Start/End: Complemental strand, 10678338 - 10678255
Alignment:
Q  442 attttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcga 525  Q
    |||||| ||||||||| | |||| |||| |||| |||||| || |  |||||||||||||||||||||| | ||| ||||||||    
T  10678338 attttcattttagaccatatataaataaattaatatatatctaacgatgtcggtgtcctatattttttaaactagtggtgtcga 10678255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 297
Target Start/End: Complemental strand, 10678584 - 10678435
Alignment:
Q  146 ctagaactggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacata 245  Q
    |||| |||||||||||||||||||||| |||||||| ||  | |||  ||||| |||||||||||| |||| ||         | ||| ||||| |||||    
T  10678584 ctaggactggtgtccgacacctatataacactcatacgaaccgtgtctgacaactcagacaaatatttaaa-catttctttt-tctcttgcttccacata 10678487  T
Q  246 tcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggt 297  Q
     || ||||||||||||||| | ||| ||||||||| | ||||||||||||||    
T  10678486 ccgtagatacaagagttacgtatgttttgagaaatattgatcaattaggggt 10678435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 46014643 - 46014521
Alignment:
Q  7 tgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacgatagttgtaggac 106  Q
    ||||||||||||||||  || ||||| ||||||||||||||  |||| |||||||||| ||      |||||||||||||| |||||| |  ||| ||||    
T  46014643 tgaagcacgaacacctccaggactaggcgtgtcgcagtgtccaacacccgttggtgtccga-----aactcctatgacactcgtacgacatgtgtcggac 46014549  T
Q  107 aactaagaccagtgtcatagataaaatt 134  Q
    ||| ||||||  |||| || ||||||||    
T  46014548 aaccaagaccgttgtcctaaataaaatt 46014521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 48598474 - 48598314
Alignment:
Q  273 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatag-tagatgaataaataaaggtcaaatactat 371  Q
    |||||||||| ||||||| |||| | ||||| |||||||||| ||| ||| |||||   ||| ||||||  ||| || ||||||||||||||||||||||    
T  48598474 tgagaaatgttgatcaatgaggg-tcatagatattaaagttggttacaacgttttttaattttttgatatatag-tggataaataaaggtcaaatactat 48598377  T
Q  372 gatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgt 435  Q
      ||||  |||| || ||||| || ||||||||| ||||  |||| |||||||| |||||||||    
T  48598376 tgtatc-gtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 48598314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 9730090 - 9730172
Alignment:
Q  461 tatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtgccagtgtcgtgtca 543  Q
    |||| |||| |||| ||||| ||||| ||||| |||| |||||||||||||||||| | |||| | ||  |||||||||||||    
T  9730090 tataaataaattaatatataggtagcggtgtcagtgttctatattttttacattagtgatgtcaatgtatcagtgtcgtgtca 9730172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 10678719 - 10678674
Alignment:
Q  2 tcctatgaagcacgaacacctatagtactagccgtgtcgcagtgtc 47  Q
    ||||||||||||||||||||| ||| |||| ||||||||| |||||    
T  10678719 tcctatgaagcacgaacacctctaggactaaccgtgtcgcggtgtc 10678674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 45215898 - 45215963
Alignment:
Q  154 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaaca 219  Q
    |||||||||||||||| || |||||||| ||| | ||| ||||||  ||| |||||||||||||||    
T  45215898 ggtgtccgacacctatgtaacactcatacgagccgtgtcggacaacccagtcaaatatctaaaaca 45215963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 250 - 515
Target Start/End: Complemental strand, 32741036 - 32740775
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    ||||||||||||||||| ||| ||| ||||||| |||||||| |||||||||||||||| | ||||||||  ||||||||||||| ||||| ||||||||    
T  32741036 agatacaagagttacatatgttttgtgaaatgttgatcaattgggggttatagacattacaattgattat--catttttagcttttttgatggtagatga 32740939  T
Q  350 ataaataaaggtcaaatactat--gatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttc 447  Q
    ||||||||||||||||||||||  |||||||| |||   ||| |||||||||| ||||||||| ||||| ||||||| |||| |||||||||| ||||||    
T  32740938 ataaataaaggtcaaatactatatgatatctt-gtt---gaactttttctaattaaataaattgctcaagttagatgtttatatatgtattttaattttc 32740843  T
Q  448 gttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacatta 515  Q
     ||||||||| ||| ||||||| |||||||||||||||  ||||| ||||||||||||||||||||||    
T  32740842 attttagaccatctttagataaattaacatatatgtagtggtgtcagtgtcctatattttttacatta 32740775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 250 - 525
Target Start/End: Original strand, 9148972 - 9149243
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 349  Q
    ||||||||||||||| | ||  || ||||||||||||||||| | ||||||||||||||||||||  |||||||||||||||||| |||||||||||| |    
T  9148972 agatacaagagttacgtatga-ttaagaaatgtagatcaattggtggttatagacattaaagttggctataacatttttagcttttttgatagtagataa 9149070  T
Q  350 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgt 449  Q
    |||||||||||| ||||||||||||||| |||||||| |  |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |    
T  9149071 ataaataaaggtaaaatactatgatatc-ttgttttaaacttttttctaatgaaataaatttctcaagttagattcttatatatgtattttgattttcat 9149169  T
Q  450 tttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcga 525  Q
     ||| | ||| |||| |||| |||||  ||| ||||| |||||  | ||||||||||||||||| |||||||||||    
T  9149170 attatatcgtttataaataaattaac--ataagtagcagtgtcattttcctatattttttacataagcggtgtcga 9149243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 237 - 513
Target Start/End: Original strand, 48632542 - 48632813
Alignment:
Q  237 ttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaatta-ggggttatagacattaaagttgattataacatttttagctttc 335  Q
    ||||||| | || ||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||| |||||||||||     
T  48632542 ttctacacaccgtagatacaagagttgcatatgtgttgagaaatgttgatcaattacggggttatagaaattaaagttgattacaacgtttttagctttt 48632641  T
Q  336 ttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgt 435  Q
    ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||||| | ||||| ||| || ||||||||||     
T  48632642 ttgatagtagaagaataaataaaggtcaaatactatggtatc-ttgttttagaacttttttcaatgaaataaactgctcaagttaaattcttatgtatga 48632740  T
Q  436 attttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacat 513  Q
    ||||||||||||||||||||      ||| |||| |||| |||| |||||| |||  |||||||||||||||||||||    
T  48632741 attttgattttcgttttaga-----gataaataaattaatatatgtgtagcggtgatggtgtcctatattttttacat 48632813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 154 - 509
Target Start/End: Complemental strand, 23432155 - 23431798
Alignment:
Q  154 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagat 253  Q
    |||||||||||| |||||| |||||||| ||| | ||| |||||| ||||| ||||||||| ||||         | ||||  ||| |||||  | ||||    
T  23432155 ggtgtccgacacttatataacactcatacgagccgtgtcggacaactcagataaatatctagaacattttt----tctctcatttccacatacagaagat 23432060  T
Q  254 acaagagttacatgtgtgttgagaaatgtagatcaattaggggtt--------atagacattaaagttgattataacatttttagctttcttgatagtag 345  Q
    ||||||||||||| ||| ||||||| ||| || |||||||||| |        ||||||||||  || |||||||||||||||| |||| ||||||||||    
T  23432059 acaagagttacatatgttttgagaagtgt-gaacaattagggggtaatagacaatagacattaccgtagattataacatttttaacttttttgatagtag 23431961  T
Q  346 atgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattt 445  Q
    |||||||||| || ||||||||||| ||||| |||||||||||| ||||||||||||||||| || ||||| |||||||||||| |||||||||||||||    
T  23431960 atgaataaatgaatgtcaaatactacgatat-tttgttttagaactttttctaatgaaataacttgctcaagttagatgcttatatatgtattttgattt 23431862  T
Q  446 tcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatatttttt 509  Q
    || ||||||||||| |||| |||| ||||||||||||||||  ||||||| |||||||||||||    
T  23431861 tcattttagaccgtatataaataaattaacatatatgtagcactgtcggtatcctatatttttt 23431798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 250 - 517
Target Start/End: Original strand, 7021541 - 7021811
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattag-gggttatagacatta--aagttgattataacatttttagctttctt-gatagtag 345  Q
    ||||| ||||||||||| ||||||||||||||| ||| |||||| |||||||||| ||||  |||||||||| ||||||||| ||||| || ||||||||    
T  7021541 agatataagagttacatatgtgttgagaaatgttgataaattagcgggttatagaaattataaagttgattacaacatttttggctttttttgatagtag 7021640  T
Q  346 atgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattt 445  Q
    || ||||||||||||||||||  | || ||| |||||||||||| |||||  ||| ||||||||| | ||| ||||||| |||||||| |||||||||||    
T  7021641 ataaataaataaaggtcaaatcttgtggtat-tttgttttagaacttttttcaataaaataaattgcgcaagttagatgtttatgtatatattttgattt 7021739  T
Q  446 tcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagc 517  Q
    || ||||| ||||| |||| |||| |||| ||||||| ||| || | ||| |||||||||||||||||||||    
T  7021740 tcattttaaaccgtttataaataaattaatatatatgaagcggtattggtatcctatattttttacattagc 7021811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 272 - 444
Target Start/End: Complemental strand, 3955117 - 3954946
Alignment:
Q  272 ttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactat 371  Q
    ||||||||||| ||||||  |||||||| ||| |||||||||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||||||| ||    
T  3955117 ttgagaaatgttgatcaacaaggggttacagagattaaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgat 3955018  T
Q  372 gatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatt 444  Q
      |||| || |||||||| ||||| |||||||||||||| ||||| ||||||||  ||||||||||| |||||    
T  3955017 cgtatc-ttattttagaactttttttaatgaaataaattgctcaagttagatgcacatgtatgtattctgatt 3954946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 273 - 444
Target Start/End: Complemental strand, 3387821 - 3387651
Alignment:
Q  273 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 372  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||| ||| ||||||  ||| | ||| ||||||||||||||||||||||||||||||     
T  3387821 tgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatactatt 3387722  T
Q  373 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatt 444  Q
     |||| ||||| ||||| ||||| |||| |||||||||  |||| ||| |||| ||||||||||||||||||    
T  3387721 ttatc-ttgttatagaactttttttaataaaataaattgttcaagttaaatgcatatgtatgtattttgatt 3387651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 309 - 440
Target Start/End: Complemental strand, 18476637 - 18476506
Alignment:
Q  309 aagttgattataacatttttagctttcttgatagtagatgaataaataaa-ggtcaaatactatgatatctttgttttagaaatttttctaatgaaataa 407  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| | ||||||| |||||||||||||||||    
T  18476637 aagttgattacaatatttttagcttttttgatagtagatgaataaataaaaggtcaaatactacgatatctt-gctttagaactttttctaatgaaataa 18476539  T
Q  408 atttctcaacttagatgcttatgtatgtatttt 440  Q
     || ||||| |||||||||||| ||||||||||    
T  18476538 cttgctcaagttagatgcttatatatgtatttt 18476506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 257 - 368
Target Start/End: Complemental strand, 126435 - 126323
Alignment:
Q  257 agagttacatgtgtgttgagaaatgtagatcaattagggg--ttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaa 354  Q
    |||||||||| ||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||    
T  126435 agagttacatatgttttgagaaatgttgatcaattaggggggttatagacattaaagttgattataacatttttaacttt-ttaatagtagatgaataaa 126337  T
Q  355 taaaggtcaaatac 368  Q
    ||||||||||||||    
T  126336 taaaggtcaaatac 126323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 529
Target Start/End: Complemental strand, 16426598 - 16426343
Alignment:
Q  273 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 372  Q
    |||||||||| ||||||  ||| ||||||||||||||||||||||| |     ||||  ||| |  ||| |||||  ||||||||||| ||||||||||     
T  16426598 tgagaaatgttgatcaacgaggagttatagacattaaagttgattacagtgcatttaaatttttcaataatagatagataaataaaggccaaatactatt 16426499  T
Q  373 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataattt 472  Q
     ||  |||||| ||||| || || ||||||| |||||| ||||| |||||||| |||||||||||||||||| |   |||| | | | |||| |||| ||    
T  16426498 gtaa-tttgttatagaacttgttttaatgaagtaaattgctcaagttagatgcatatgtatgtattttgattcttaatttatatcttttataaataaatt 16426400  T
Q  473 aacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    || ||||| ||||| ||||| |||||||||  ||||||||||| |||||| ||||||    
T  16426399 aatatataggtagcggtgtcagtgtcctatgctttttacattaacggtgttgacgtg 16426343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 471 - 542
Target Start/End: Original strand, 10171642 - 10171713
Alignment:
Q  471 ttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtgccagtgtcgtgtc 542  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||    
T  10171642 ttaacatatatgtagcggtgtcggtgtcctatattttttacactagcggtgtcgaagtttcagtgtcgtgtc 10171713  T

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Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 476 - 549
Target Start/End: Original strand, 30883231 - 30883304
Alignment:
Q  476 atatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtgccagtgtcgtgtcaagtgtc 549  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||    
T  30883231 atatatgcagcggtgtcggtgtcctatgttttttacattagcggtgttgacgtgtcagtgtcgtgtcaggtgtc 30883304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 360 - 464
Target Start/End: Complemental strand, 125256 - 125153
Alignment:
Q  360 gtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgt 459  Q
    ||||||||||||||| |||| |||||| || ||||| |||||||||||||| ||||| |||||| ||| ||||||||||||||||| | |||||| | ||    
T  125256 gtcaaatactatgatttctt-gttttaaaactttttttaatgaaataaattgctcaagttagatacttgtgtatgtattttgatttacattttagtctgt 125158  T
Q  460 ctata 464  Q
    |||||    
T  125157 ctata 125153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 292 - 444
Target Start/End: Original strand, 50127176 - 50127326
Alignment:
Q  292 aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaat 391  Q
    |||||||||||||||||||||||| |  | |   ||||  ||| | ||||||||||||| ||||||||| ||||||||||  |||||| ||| ||||| |    
T  50127176 aggggttatagacattaaagttgaatgcagcgcatttaaatttttcgatagtagatgaa-aaataaaggccaaatactattgtatctt-gttatagaact 50127273  T
Q  392 ttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatt 444  Q
    || | ||||||||||||||  |||| |||||||| ||||||||||||||||||    
T  50127274 ttatttaatgaaataaattgttcaagttagatgcatatgtatgtattttgatt 50127326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 314
Target Start/End: Complemental strand, 18488488 - 18488333
Alignment:
Q  160 cgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagatacaaga 259  Q
    ||||||||||||| || ||||| ||| | ||| |||||| || ||||||||| | |||||        || ||| ||||| |||||||| |||| |||||    
T  18488488 cgacacctatataacattcatacgagccatgtcggacaactctgacaaatatatgaaacattttttttctctcttgcttccacatatcgtagatccaaga 18488389  T
Q  260 gttacatgtgtgttgagaaatgtagatcaattagg-ggttatagacattaaagttg 314  Q
    ||||||||||| ||||||||||| ||| |||| || ||| |||||||||| |||||    
T  18488388 gttacatgtgttttgagaaatgttgattaatttggaggtaatagacattacagttg 18488333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 124428 - 124379
Alignment:
Q  476 atatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcga 525  Q
    ||||||||||| ||||  || |||||||||||||||||||| ||||||||    
T  124428 atatatgtagcggtgttagtatcctatattttttacattagtggtgtcga 124379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 156 - 529
Target Start/End: Original strand, 45612316 - 45612685
Alignment:
Q  156 tgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctc--gcttctacatatcgcagat 253  Q
    |||||||||||| |||| |||||||| ||||| ||| |||||| ||| ||||||||||||||||         | ||||  |||||  || | |  ||||    
T  45612316 tgtccgacacctgtataacactcatacgagtcgtgtcggacaactcaaacaaatatctaaaacaatttttttttctctcttgcttccgcacaccatagat 45612415  T
Q  254 acaagagttacatgtgtgtt-gagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaata 352  Q
    ||||||||||||| ||| || ||||||||| ||| ||| |||| |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  45612416 acaagagttacatatgtttttgagaaatgttgattaataagggtttatagacattatagttgattatatcatttttagcttttttgatagtagatgaata 45612515  T
Q  353 aataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgtttt 452  Q
    |||||||||||||||     ||||| ||||| |||||  ||||||||||| ||||||| ||||| || |||| |||| |||||||||| |||||| ||||    
T  45612516 aataaaggtcaaata-----atatc-ttgttgtagaacattttctaatgacataaattgctcaagttggatgtttatatatgtattttaattttcatttt 45612609  T
Q  453 agaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    |||| |||| || || | ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  45612610 agacagtctttaaatgaattaacatatatgtaattgtgtcggtgt-ctatattttttacattagcggtgtcgacgtg 45612685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 235 - 441
Target Start/End: Complemental strand, 17732979 - 17732772
Alignment:
Q  235 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattagg-ggttatagacattaaagttgattataacatttttagctt 333  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  17732979 gcttccacatatcgtagatacaagagttacatgtgttttgagaaatgttgattaattaggaggtaatagacattacagttgattataacatttttagctt 17732880  T
Q  334 tcttgatagtagatgaataaat-aaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgta 432  Q
    | |||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||| ||||||||||||||||| || ||||| |||||||||||| ||    
T  17732879 ttttgatagtagatgaataaataaaaggtcaaatactacgatatc-ttgctttagaactttttctaatgaaataacttgctcaagttagatgcttatata 17732781  T
Q  433 tgtattttg 441  Q
    |||||||||    
T  17732780 tgtattttg 17732772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 154 - 456
Target Start/End: Original strand, 40289031 - 40289330
Alignment:
Q  154 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagat 253  Q
    ||||||||||||||||||| |||||||| ||||| ||| |||||| ||| ||||||||||||||||        || ||| ||||| ||| | |  ||||    
T  40289031 ggtgtccgacacctatataacactcatacgagtcatgtcggacaactcaaacaaatatctaaaacatttttt--ctctcttgcttccacacaccatagat 40289128  T
Q  254 acaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataa 353  Q
    |||||| |||||| ||| |||||||||||  |||||||||||||| ||||||||| | |||||||    |||||||| ||| ||||||||||||||||||    
T  40289129 acaagatttacatatgttttgagaaatgttaatcaattaggggttgtagacattacaattgattaagttatttttagtttttttgatagtagatgaataa 40289228  T
Q  354 ataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgtttta 453  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||   ||| ||| ||| |||| |||||||||| |||||| |||||    
T  40289229 ataaaggtcaaatactatgatatc-ttgttgtagaactttttctaatgaaataaattgtccaagttaaatgtttatatatgtattttaattttcatttta 40289327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 343 - 529
Target Start/End: Complemental strand, 54305752 - 54305567
Alignment:
Q  343 tagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttga 442  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||| ||||||||| ||||| ||| ||| || | |||||||||| |    
T  54305752 tagatgaataaataaaggtcaaatactatgatatctt-gtcgtagaactttttctaattaaataaattgctcaagttaaatgtttgtatatgtattttaa 54305654  T
Q  443 ttttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    ||||| ||||| ||||||| || |||| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  54305653 ttttcattttaaaccgtctttaaataaattaacatatatgtagcggtgtcggtgtcctataatttttacattagcgatgtcgacgtg 54305567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 235 - 408
Target Start/End: Complemental strand, 31734697 - 31734527
Alignment:
Q  235 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagcttt 334  Q
    ||||| ||||| || ||||||||||||||||| ||| ||||||||||| |||||  | ||||| |||||||||| ||||||||||||||||||||||| |    
T  31734697 gcttccacataccgtagatacaagagttacatatgttttgagaaatgttgatcacat-ggggtaatagacattatagttgattataacatttttagctct 31734599  T
Q  335 cttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaa 408  Q
     |||||||||||||||||||||||||  |||||||| |||||| ||||||||||| ||||||||||||||||||    
T  31734598 tttgatagtagatgaataaataaagg-aaaatactacgatatc-ttgttttagaactttttctaatgaaataaa 31734527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 354 - 529
Target Start/End: Complemental strand, 55680822 - 55680648
Alignment:
Q  354 ataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgtttta 453  Q
    ||||| |||||||||||||||||||| ||| ||||| ||||||| |||| | ||||| ||| | ||||||| |||| |||||||||| ||||||  ||||    
T  55680822 ataaatgtcaaatactatgatatctt-gttgtagaactttttctgatgacagaaattgctcgagttagatgtttatatatgtattttaattttcacttta 55680724  T
Q  454 gaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgtg 529  Q
    ||| |||| || |||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  55680723 gacggtctttaaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtg 55680648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 270 - 424
Target Start/End: Complemental strand, 44507857 - 44507704
Alignment:
Q  270 tgttgagaaatgt-agatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatac 368  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||  |||| |||||||||| |||| || |||| ||||| |||||||||||||||||      
T  44507857 tgttgagaaatgttagatcaatgagggattatagacattaaagtcaattacaacatttttatctttttttatagaagatggataaataaaggtcaaatgt 44507758  T
Q  369 tatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatg 424  Q
     || |||| |||||||||| ||||||| |||||||||||||||||||| |||||||    
T  44507757 catcatat-tttgttttag-aatttttttaatgaaataaatttctcaaattagatg 44507704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 259 - 455
Target Start/End: Complemental strand, 2641321 - 2641122
Alignment:
Q  259 agttacatgtgtgttgagaaatgtagatcaattaggg-gttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataa 357  Q
    |||| ||| ||||||||||||||| ||||||| | || |||||||| |||||||||||||| ||  |||||  |||| || ||||||||| |||||||||    
T  2641321 agtttcatatgtgttgagaaatgttgatcaatcatggagttatagaaattaaagttgattacaatgtttttgactttttttatagtagataaataaataa 2641222  T
Q  358 aggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgctta---tgtatgtattttgattttcgttttag 454  Q
    ||||||||||| ||  ||| |||||||||||| |||||  |||||||||| || ||||| ||| || ||||   ||||||||||||||||| | ||||||    
T  2641221 aggtcaaataccatagtat-tttgttttagaacttttttcaatgaaataagttgctcaaattaaattcttattgtgtatgtattttgatttgcattttag 2641123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 3420041 - 3419960
Alignment:
Q  250 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagc 331  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| |||||||||||  |||||||||    
T  3420041 agatacaagagttacatatgttttgagaaatgttgatcaattaggggttatagatattatagttgattatataatttttagc 3419960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 398 - 528
Target Start/End: Original strand, 658541 - 658671
Alignment:
Q  398 aatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgt 497  Q
    ||||||||||||| | ||| ||| ||||||| ||||||||||| |||||| ||||||||| |||||  |||| |||  ||||||||  |  |||||||||    
T  658541 aatgaaataaattgcgcaatttatatgcttacgtatgtatttttattttcattttagaccctctattaataaattactatatatgtgtcgctgtcggtgt 658640  T
Q  498 cctatattttttacattagcggtgtcgacgt 528  Q
    |||| ||||||||||||||| |||| |||||    
T  658641 cctagattttttacattagcagtgttgacgt 658671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 35529532 - 35529481
Alignment:
Q  476 atatatgtagctgtgtcggtgtcctatatt-ttttacattagcggtgtcgac 526  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  35529532 atatatgtagcggtgtcggtgtcctatatttttttacattagcggtgtcgac 35529481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 658195 - 658320
Alignment:
Q  4 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacgatagttgtag 103  Q
    |||||||||||| |||||||||| || |  |||||||||||||| |||||| || |||||| ||     |||| ||||||||||||||||| |  ||| |    
T  658195 ctatgaagcacggacacctataggaccaagcgtgtcgcagtgtccgacacgtgtcggtgtccga-----cacttctatgacacttgtacgacacgtgtcg 658289  T
Q  104 gacaactaagaccagtgtcatagataaaatt 134  Q
    || ||| |||||||||||| || ||||||||    
T  658290 gataaccaagaccagtgtcctaaataaaatt 658320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 455
Target Start/End: Complemental strand, 35530122 - 35530048
Alignment:
Q  379 ttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttaga 455  Q
    ||||||||||||||||  ||| |||||||||| ||||| ||||||||  |||||| |||||||||| ||| ||||||    
T  35530122 ttgttttagaaatttt--taaagaaataaattgctcaatttagatgcacatgtatatattttgattctcgatttaga 35530048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 55681112 - 55681028
Alignment:
Q  5 tatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacga 94  Q
    ||||||||||| ||||||  || ||||| |||||||| ||||| ||||||||| |||||| ||     ||||||||||||||||||||||    
T  55681112 tatgaagcacggacacctcgaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccga-----cactcctatgacacttgtacga 55681028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 658455 - 658536
Alignment:
Q  254 acaagagttacatgtgtgttgagaaatgtagatcaatt-aggggttatagacattaaagttgattataacatttttagcttt 334  Q
    ||||||||||||| |||| ||| |||||| || ||||| | || ||||||| ||| |||||||||| |||||||||| ||||    
T  658455 acaagagttacatatgtgctgaaaaatgttgaacaattaaaggtttatagaaatttaagttgattacaacatttttaacttt 658536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 24600984 - 24600931
Alignment:
Q  305 attaaagttgattataacatttttagctttcttgatagtagatgaataaataaa 358  Q
    |||||| || |||| |||||||||| |||| ||||||||||||| |||||||||    
T  24600984 attaaatttaattacaacatttttaacttttttgatagtagatggataaataaa 24600931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 24614671 - 24614618
Alignment:
Q  305 attaaagttgattataacatttttagctttcttgatagtagatgaataaataaa 358  Q
    |||||| ||||||| || ||||||| |||| ||||||||||||| |||||||||    
T  24614671 attaaatttgattacaatatttttaacttttttgatagtagatggataaataaa 24614618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 45612167 - 45612244
Alignment:
Q  9 aagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacac 86  Q
    ||||||| || ||| ||||||||| |||||||| ||| |  ||| |||| |||||| |||||| ||||||||||||||    
T  45612167 aagcacggacgcctctagtactaggcgtgtcgcggtgcccaacatgcgtcggtgtccgacactacactcctatgacac 45612244  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 40289809 - 40289860
Alignment:
Q  466 ataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcg 518  Q
    |||| |||||||||||||||| ||||||||||  |||| ||||||||||||||    
T  40289809 ataaattaacatatatgtagcggtgtcggtgttttata-tttttacattagcg 40289860  T

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Target: scaffold0325 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 268 - 524
Target Start/End: Complemental strand, 13050 - 12794
Alignment:
Q  268 tgtgttgagaaatgtagatcaattagg-ggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaat 366  Q
    |||||||||||| || ||||||||||| ||||||||| |||||||||||||| ||  ||||||||||| ||||||||||||||||||||||| |||||||    
T  13050 tgtgttgagaaacgttgatcaattaggaggttatagaaattaaagttgattacaatgtttttagcttttttgatagtagatgaataaataaatgtcaaat 12951  T
Q  367 actatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgattttcgttttagaccgtctataga 466  Q
    |||| || ||||| ||||| ||| |||||   |||||||||||| ||||| ||| || ||||||| ||||||||||||||| |||||| || ||| || |    
T  12950 actaggacatctt-gttttcgaacttttttcgatgaaataaattgctcaagttaaattcttatgtttgtattttgattttcattttaggccttctgtaaa 12852  T
Q  467 taatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcg 524  Q
    ||| |||| ||||||||||| ||||||||||||| |||||||||||||||| ||||||    
T  12851 taaattaatatatatgtagcggtgtcggtgtcctgtattttttacattagcagtgtcg 12794  T

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Target: scaffold0019 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 237 - 528
Target Start/End: Original strand, 70030 - 70323
Alignment:
Q  237 ttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattag-gggttatagacattaaagttgattataacatttttagcttt- 334  Q
    ||||||| | || |||||||||| |||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||   |||||||||||||     
T  70030 ttctacacaacgtagatacaagaattacatatgtgttgagaaatgttgatcaattagagggttatagaaattaaagttgatta---catttttagctttt 70126  T
Q  335 ----cttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatg 430  Q
        ||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||||  ||| || |||||| ||| | ||| || |||||     
T  70127 ttttctttatattagatgaataaataaatgtcaaatactatgatatc-ttgttttagaacttttttcaataaagtaaattgctcgagttaaattcttata 70225  T
Q  431 tatgtattttgattttcgttttagaccgtctatagataatttaacatatatgtagctgtgtcggtgtcctatattttttacattagcggtgtcgacgt 528  Q
    | || ||||| |||||| | ||||||| ||||||  ||| || | ||| ||||||  |||||  ||| || | |||||||||||||||||||||||||    
T  70226 tttgcattttaattttcatcttagaccatctataagtaaattgatatacatgtagtggtgtctatgtactgtgttttttacattagcggtgtcgacgt 70323  T

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Target: scaffold0012 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 444
Target Start/End: Complemental strand, 209355 - 209187
Alignment:
Q  273 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 372  Q
    |||||||||| ||||||  ||||||||| |||||||||||| |||| ||| ||||||  ||| | ||| ||||||| ||||||||||| |||||| | |     
T  209355 tgagaaatgttgatcaacgaggggttatcgacattaaagtttattacaacgtttttaaatttttcgattgtagatggataaataaaggccaaatattgtt 209256  T
Q  373 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatt 444  Q
     ||| |||||| ||||| ||||| |||||||||||||| ||  | |||||||| ||||||||||||||||||    
T  209255 gtat-tttgttatagaactttttttaatgaaataaattgct--agttagatgcatatgtatgtattttgatt 209187  T

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Target: scaffold1723 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 273 - 444
Target Start/End: Original strand, 334 - 502
Alignment:
Q  273 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 372  Q
    |||||||||| ||||||  | ||||||| ||||| ||||||||||  ||| | |||   ||| | ||||| ||||| ||||||||||||||||||||||     
T  334 tgagaaatgttgatcaacaatgggttatggacatcaaagttgattccaacgtatttcaattt-tcgatagcagatggataaataaaggtcaaatactatt 432  T
Q  373 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatt 444  Q
     |||| ||||| ||||| ||||| ||||||||||| || ||||| |||||||| ||| ||||||||||||||    
T  433 gtatc-ttgttatagaattttttttaatgaaataatttgctcaagttagatgcatat-tatgtattttgatt 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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