View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_90 (Length: 258)

Name: NF1519_low_90
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_90
NF1519_low_90
[»] chr5 (10 HSPs)
chr5 (50-258)||(39062470-39062677)
chr5 (1-51)||(19647675-19647725)
chr5 (1-49)||(8787477-8787525)
chr5 (1-49)||(13661946-13661994)
chr5 (1-49)||(34650833-34650881)
chr5 (1-50)||(10054352-10054401)
chr5 (1-49)||(35132659-35132707)
chr5 (1-49)||(35504241-35504288)
chr5 (1-49)||(11957967-11958015)
chr5 (1-50)||(21547393-21547442)
[»] chr3 (17 HSPs)
chr3 (1-52)||(10617281-10617332)
chr3 (1-50)||(46352772-46352821)
chr3 (1-49)||(858727-858775)
chr3 (1-49)||(4168321-4168369)
chr3 (1-49)||(43787009-43787057)
chr3 (1-49)||(52520819-52520867)
chr3 (1-50)||(272358-272407)
chr3 (1-50)||(6842757-6842806)
chr3 (1-49)||(39074556-39074604)
chr3 (1-49)||(43269739-43269787)
chr3 (1-50)||(49893469-49893518)
chr3 (1-49)||(40362580-40362628)
chr3 (8-49)||(53163911-53163952)
chr3 (1-49)||(2938040-2938088)
chr3 (1-49)||(11308211-11308259)
chr3 (1-49)||(18014810-18014858)
chr3 (1-49)||(48725409-48725457)
[»] chr8 (20 HSPs)
chr8 (1-52)||(34228820-34228871)
chr8 (1-51)||(16394059-16394109)
chr8 (1-49)||(168604-168652)
chr8 (7-51)||(9934557-9934601)
chr8 (1-49)||(10618136-10618184)
chr8 (1-49)||(27988500-27988547)
chr8 (1-49)||(28045802-28045849)
chr8 (1-56)||(7304511-7304566)
chr8 (1-48)||(30675574-30675621)
chr8 (7-49)||(2490157-2490199)
chr8 (1-47)||(16890482-16890528)
chr8 (5-50)||(16888543-16888588)
chr8 (10-51)||(43723731-43723772)
chr8 (1-49)||(2805260-2805308)
chr8 (1-49)||(4537744-4537792)
chr8 (1-49)||(11112777-11112825)
chr8 (7-49)||(18955840-18955882)
chr8 (1-50)||(9537823-9537872)
chr8 (1-49)||(13643149-13643197)
chr8 (1-49)||(13743574-13743622)
[»] chr1 (22 HSPs)
chr1 (1-48)||(38162988-38163035)
chr1 (1-49)||(18043300-18043348)
chr1 (1-49)||(29210532-29210580)
chr1 (1-52)||(24178460-24178511)
chr1 (1-49)||(3784713-3784761)
chr1 (1-49)||(5694459-5694507)
chr1 (1-49)||(12072062-12072110)
chr1 (1-49)||(29657909-29657957)
chr1 (1-49)||(42769990-42770038)
chr1 (1-49)||(51065748-51065796)
chr1 (2-49)||(38701937-38701984)
chr1 (1-50)||(30294380-30294429)
chr1 (1-49)||(15227877-15227925)
chr1 (1-49)||(21112681-21112729)
chr1 (1-49)||(21117423-21117471)
chr1 (1-49)||(47010131-47010179)
chr1 (1-57)||(48383103-48383159)
chr1 (4-49)||(14350279-14350323)
chr1 (7-52)||(23822520-23822565)
chr1 (1-50)||(30657740-30657789)
chr1 (1-49)||(19031815-19031863)
chr1 (1-49)||(45449244-45449292)
[»] chr2 (17 HSPs)
chr2 (1-51)||(30486348-30486398)
chr2 (1-49)||(20553069-20553117)
chr2 (1-51)||(32360867-32360917)
chr2 (1-50)||(31390150-31390199)
chr2 (1-49)||(22068320-22068368)
chr2 (1-49)||(22567740-22567788)
chr2 (1-49)||(27856396-27856444)
chr2 (1-49)||(31438784-31438832)
chr2 (7-50)||(31782564-31782607)
chr2 (1-49)||(4381933-4381981)
chr2 (1-49)||(26387064-26387112)
chr2 (1-49)||(34442533-34442580)
chr2 (1-49)||(44588040-44588088)
chr2 (12-49)||(19036965-19037002)
chr2 (1-50)||(22887888-22887937)
chr2 (1-49)||(35851750-35851799)
chr2 (1-49)||(28601104-28601152)
[»] chr7 (8 HSPs)
chr7 (1-50)||(24438615-24438664)
chr7 (1-49)||(34333421-34333469)
chr7 (1-49)||(34606399-34606447)
chr7 (1-52)||(4628704-4628755)
chr7 (1-52)||(24798400-24798451)
chr7 (1-50)||(5239423-5239472)
chr7 (1-50)||(29993486-29993535)
chr7 (1-45)||(18486099-18486143)
[»] scaffold0188 (1 HSPs)
scaffold0188 (1-49)||(6110-6158)
[»] chr6 (14 HSPs)
chr6 (1-49)||(392234-392282)
chr6 (1-49)||(23402276-23402324)
chr6 (1-49)||(32929508-32929556)
chr6 (1-49)||(4215833-4215881)
chr6 (1-49)||(32985193-32985241)
chr6 (1-49)||(34477569-34477617)
chr6 (1-50)||(3515904-3515953)
chr6 (1-49)||(27433630-27433678)
chr6 (7-49)||(34706865-34706907)
chr6 (1-50)||(12145116-12145165)
chr6 (8-49)||(18276612-18276653)
chr6 (1-50)||(20898067-20898115)
chr6 (1-62)||(35044027-35044086)
chr6 (1-49)||(2581090-2581138)
[»] chr4 (17 HSPs)
chr4 (1-49)||(16820990-16821038)
chr4 (1-49)||(33108673-33108721)
chr4 (1-62)||(4268809-4268870)
chr4 (1-49)||(7769076-7769124)
chr4 (1-49)||(16536186-16536234)
chr4 (1-49)||(29591327-29591375)
chr4 (1-49)||(54054667-54054715)
chr4 (1-49)||(55882820-55882868)
chr4 (1-50)||(12356382-12356431)
chr4 (1-49)||(18067879-18067927)
chr4 (1-49)||(32217182-32217230)
chr4 (1-49)||(36395237-36395285)
chr4 (1-49)||(43202384-43202431)
chr4 (1-50)||(6164231-6164280)
chr4 (1-50)||(54897446-54897495)
chr4 (1-49)||(4089280-4089328)
chr4 (1-49)||(50619224-50619271)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-50)||(10848-10897)
[»] scaffold0674 (1 HSPs)
scaffold0674 (1-49)||(7916-7964)
[»] scaffold0549 (1 HSPs)
scaffold0549 (1-49)||(7407-7455)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-62)||(53344-53405)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-49)||(69363-69411)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-49)||(53685-53733)
[»] scaffold0206 (1 HSPs)
scaffold0206 (1-52)||(10987-11037)
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-50)||(15034-15083)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-49)||(233991-234039)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 50 - 258
Target Start/End: Complemental strand, 39062677 - 39062470
Alignment:
Q  50 aaagaaatattatctcccctacaaatcctctagtttggcggagagctaaatttatctttgaagaaattttgatcactttcccttttgataagtaaatcaa 149  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39062677 aaagaaatattatctcccctacagatcctctagtttggcggagagctaaatttatctttgaagaaattttgatcactttcccttttgataagtaaatcaa 39062578  T
Q  150 acaccttaaatttaggtcatcttatttgacggatataattgtcatattatatagttcctcttgttacaaaacataagtttgcatgagaaggaaattaatt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  39062577 acaccttaaatttaggtcatcttatttgacggatataattgtcatattatatagttcctc-tgttacgaaacataagtttgcatgagaaggaaattaatt 39062479  T
Q  250 aattattca 258  Q
    |||||||||    
T  39062478 aattattca 39062470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19647725 - 19647675
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaa 51  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19647725 tttatggtatgcttaacccgtgccccgggggcaccggttagccggacccaa 19647675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8787477 - 8787525
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  8787477 tttatggtatgcttaacctgtgccccgggggcaccggttagcaggaccc 8787525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13661946 - 13661994
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  13661946 tttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccc 13661994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34650881 - 34650833
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  34650881 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 34650833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10054401 - 10054352
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  10054401 tttatggtatgtttaacccgtgccccgggggtaccggttagcaggaccca 10054352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35132659 - 35132707
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  35132659 tttatggtatgcttaaccaatgccccgggggcaccggttagcaggaccc 35132707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35504288 - 35504241
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  35504288 tttatggtatgcttaacccgtgtc-cgggggcaccggttagcaggaccc 35504241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11958015 - 11957967
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||| |||||||||| ||||| | ||||||||||||||||||||||    
T  11958015 tttatggcatgcttaaccagtgccccaggggcaccggttagcaggaccc 11957967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 21547442 - 21547393
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| || || ||| | |||||||||||||||||||    
T  21547442 tttatggtatgcttaaccagtaccccggagacaccggttagcaggaccca 21547393  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10617332 - 10617281
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaa 52  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10617332 tttatggtatgcttaacccgtgccccgggggcaccggttagcaggacccaaa 10617281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46352772 - 46352821
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  46352772 tttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccca 46352821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 858727 - 858775
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  858727 tttatggtatgcttaacccgtgccccgggggcaccggttagccggaccc 858775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4168321 - 4168369
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  4168321 tttatggtatgcttaacccgtaccccgggggcaccggttagcaggaccc 4168369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43787009 - 43787057
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  43787009 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 43787057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52520819 - 52520867
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  52520819 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 52520867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 272358 - 272407
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||    
T  272358 tttatggtatgcttaatcggtgccccgggggcaccggttagcaggaccca 272407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6842757 - 6842806
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  6842757 tttatggtatgcttaaccagtgccccgggggcagcggttagcaggaccca 6842806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39074556 - 39074604
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  39074556 tttatggtatgcttaaccagtgccccaggggcaccggttagcaggaccc 39074604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43269787 - 43269739
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  43269787 tttatggtatgcttaaccagtgccccggaggcaccggttagcaggaccc 43269739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 49893469 - 49893518
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||| | ||||| ||||||||||||||||| |||||||    
T  49893469 tttatggtatgcttaatcagtgccccgggggcaccggttagccggaccca 49893518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40362628 - 40362580
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| |||||| |||| ||||||||||||    
T  40362628 tttatggtatgcttaaccagtgccccgggggtaccgattagcaggaccc 40362580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 53163911 - 53163952
Alignment:
Q  8 tatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||    
T  53163911 tatgcttaacctgtgccccggaggcaccggttagcaggaccc 53163952  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2938088 - 2938040
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||  || || || |||||||||||||||||||||    
T  2938088 tttatggtatgcttaacgagtaccccgagggcaccggttagcaggaccc 2938040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11308259 - 11308211
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||||||||||  |||| | ||||||||| ||||||||||||    
T  11308259 tttatggtatgcttaaccaatgccccaggggcaccgattagcaggaccc 11308211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18014810 - 18014858
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||| | ||||| |||||||||| ||||||| |||||    
T  18014810 tttatggtatgcttaatcagtgccccgggggcaccagttagcaagaccc 18014858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 48725409 - 48725457
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||  ||| ||||||||||||||    
T  48725409 tttatggtatgcttaaccagtgccccgggaccacgggttagcaggaccc 48725457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34228820 - 34228871
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaa 52  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  34228820 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggacccaaa 34228871  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16394109 - 16394059
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaa 51  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  16394109 tttatggtatgcttaaccaatgccccgggggcaccggttagcaggacccaa 16394059  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 168604 - 168652
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  168604 tttatggtatgcttaaccaatgccccgggggcaccggttagcaggaccc 168652  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 9934557 - 9934601
Alignment:
Q  7 gtatgcttaacccgtgccacgggggcaccggttagcaggacccaa 51  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||    
T  9934557 gtatgtttaacccgtgccccgggggcaccggttagcaggacccaa 9934601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10618136 - 10618184
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||| | | ||||||||||||||||||||||    
T  10618136 tttatggtatgcttaacccgtgtctccggggcaccggttagcaggaccc 10618184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27988547 - 27988500
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  27988547 tttatggtatgcttaaccagtgcc-cgggggcaccggttagcaggaccc 27988500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28045849 - 28045802
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  28045849 tttatggtatgcttaaccagtgcc-cgggggcaccggttagcaggaccc 28045802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7304566 - 7304511
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaagaaa 56  Q
    |||||||||||||||||| ||||  |||||||||||||||| |||||||| |||||    
T  7304566 tttatggtatgcttaaccagtgctccgggggcaccggttagtaggacccatagaaa 7304511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30675621 - 30675574
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacc 48  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  30675621 tttatggtatgcttaaccagtgccccggggacaccggttagcaggacc 30675574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 2490199 - 2490157
Alignment:
Q  7 gtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  2490199 gtatgcttaacccgtgcctcgggggcaccggttagcatgaccc 2490157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16890528 - 16890482
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggac 47  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||    
T  16890528 tttatggtatgcttaaccggtgcctccggggcaccggttagcaggac 16890482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 16888588 - 16888543
Alignment:
Q  5 tggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||    
T  16888588 tggtatgcttaaccaatgccccgggggcaccggttagcaggaccca 16888543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 43723772 - 43723731
Alignment:
Q  10 tgcttaacccgtgccacgggggcaccggttagcaggacccaa 51  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  43723772 tgcttaacccgtgccccgggggcaccggttagcagcacccaa 43723731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2805308 - 2805260
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||| ||||||||||||| ||||||    
T  2805308 tttatggtatgcttaaccagtgccccggaggcaccggttagccggaccc 2805260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4537792 - 4537744
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| | | ||||||||||||||||||||    
T  4537792 tttatggtatgcttaacctgtgccccagaggcaccggttagcaggaccc 4537744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11112777 - 11112825
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| |||||  |||||||| ||||||||||||||    
T  11112777 tttatggtatgcttaacctgtgccctgggggcactggttagcaggaccc 11112825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 18955840 - 18955882
Alignment:
Q  7 gtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||||| |||| |||||||||||||||||| |||||    
T  18955840 gtatgcttaacccatgccccgggggcaccggttagcatgaccc 18955882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9537872 - 9537823
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| ||| | ||| | |||||||||||||||||||    
T  9537872 tttatggtatgcttaaccagtgtcccggagacaccggttagcaggaccca 9537823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13643149 - 13643197
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| |||||   || |||||||||||||||||||    
T  13643149 tttatggtatgcttaaccagtgccctaggagcaccggttagcaggaccc 13643197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13743574 - 13743622
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| |||||   || |||||||||||||||||||    
T  13743574 tttatggtatgcttaaccagtgccctaggagcaccggttagcaggaccc 13743622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38162988 - 38163035
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacc 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  38162988 tttatggtatgcttaacccgtgccccgggggcaccggttagcaggacc 38163035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18043300 - 18043348
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  18043300 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 18043348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29210532 - 29210580
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  29210532 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 29210580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24178511 - 24178460
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaa 52  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  24178511 tttatggtatgcttaaccagtgccccgggggcaccggttagccggacccaaa 24178460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3784761 - 3784713
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  3784761 tttatggtatgcttaacccgtgtcccgggggcaccggttagccggaccc 3784713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5694459 - 5694507
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  5694459 tttatggtatgcttaaccagtgctccgggggcaccggttagcaggaccc 5694507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12072110 - 12072062
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  12072110 tttatggtatgcttaaccagtgccccgggggcaccggttagcagcaccc 12072062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29657909 - 29657957
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||||    
T  29657909 tttatggtatgcttaaccagtgccctgggggcaccggttagcaggaccc 29657957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42770038 - 42769990
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  42770038 tttatggtatgcttaaccagtgccccgggggcaccggttagcagaaccc 42769990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 51065796 - 51065748
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  51065796 tttatggtatgcttaaccagtgccccaggggcaccggttagcaggaccc 51065748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 38701984 - 38701937
Alignment:
Q  2 ttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||||||||| ||||| || |||||||||||||||||||||    
T  38701984 ttatggtatgcttaaccagtgccccgagggcaccggttagcaggaccc 38701937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30294429 - 30294380
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| ||||  ||||| |||||||||||||||||||    
T  30294429 tttatggtatgcttaacctgtgctccggggacaccggttagcaggaccca 30294380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15227877 - 15227925
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||| |||||||||||||| |||||    
T  15227877 tttatggtatgcttaaccagtgccccggaggcaccggttagcaagaccc 15227925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21112729 - 21112681
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||  ||||| || |||||||||||||||||||||    
T  21112729 tttatggtatgcttaactagtgccccgagggcaccggttagcaggaccc 21112681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21117471 - 21117423
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||  ||||| || |||||||||||||||||||||    
T  21117471 tttatggtatgcttaacttgtgccccgagggcaccggttagcaggaccc 21117423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47010131 - 47010179
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||  | ||||||||||||||||||||||    
T  47010131 tttatggtatgcttaaccagtgctccaggggcaccggttagcaggaccc 47010179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 48383159 - 48383103
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaagaaat 57  Q
    ||||||||||||||||||  |||| | ||||||| ||||||||||||||||| ||||    
T  48383159 tttatggtatgcttaaccaatgcctcaggggcactggttagcaggacccaaaaaaat 48383103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 14350323 - 14350279
Alignment:
Q  4 atggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  14350323 atggtatgcttaaccagtgccccgggg-caccggttagcaggaccc 14350279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 23822565 - 23822520
Alignment:
Q  7 gtatgcttaacccgtgccacgggggcaccggttagcaggacccaaa 52  Q
    ||||||||||||  |||| |||||||||||||||||| ||||||||    
T  23822565 gtatgcttaaccaatgccccgggggcaccggttagcatgacccaaa 23822520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30657740 - 30657789
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| || || ||| ||||||| |||||||||||||    
T  30657740 tttatggtatgcttaaccagtaccccggaggcaccgattagcaggaccca 30657789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19031863 - 19031815
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||| |||||||||||||| || ||| | ||||||||||||||||||    
T  19031863 tttatgatatgcttaacccgtaccccggagacaccggttagcaggaccc 19031815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45449292 - 45449244
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| |||||| ||||| | |||||| |||||||||||||||    
T  45449292 tttatggtatgtttaaccagtgccccaggggcatcggttagcaggaccc 45449244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30486348 - 30486398
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaa 51  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  30486348 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggacccaa 30486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20553069 - 20553117
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  20553069 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 20553117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32360917 - 32360867
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaa 51  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  32360917 tttatggtatgcttaaccaatgccccgggggcaccggttagcaggacccaa 32360867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31390150 - 31390199
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  31390150 tttatggtatgcttaacccgtgctccgggggcaccgattagcaggaccca 31390199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22068368 - 22068320
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  22068368 tttatggtatgcttaaccagtgccccgggggcaccgattagcaggaccc 22068320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22567740 - 22567788
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||    
T  22567740 tttatggtatgcttaacccgtgctccaggggcaccggttagcaggaccc 22567788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27856444 - 27856396
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  27856444 tttatggtatgcttaaccagtgccccgggggcatcggttagcaggaccc 27856396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31438784 - 31438832
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  31438784 tttatggtatgcttaaccagtgccccggggacaccggttagcaggaccc 31438832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 31782607 - 31782564
Alignment:
Q  7 gtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  31782607 gtatgcttaacccgtgcctcgggggcaccggttagcatgaccca 31782564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4381933 - 4381981
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| |||| |||| ||||||||||||||    
T  4381933 tttatggtatgcttaaccagtgccccgggagcactggttagcaggaccc 4381981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26387112 - 26387064
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| |||||  |||||||||||||| ||||||||    
T  26387112 tttatggtatgcttaaccagtgccttgggggcaccggttaacaggaccc 26387064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34442580 - 34442533
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  34442580 tttatggtatgcttaaccagtgcc-cgggggcatcggttagcaggaccc 34442533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44588040 - 44588088
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||  ||||| |||||| |||||||||||||||||    
T  44588040 tttatggtatgcttaacaagtgccccgggggtaccggttagcaggaccc 44588088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 19037002 - 19036965
Alignment:
Q  12 cttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  19037002 cttaacccgtgccccgggggcaccggttagcagcaccc 19036965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 22887888 - 22887937
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| ||||  ||||||||||| |||||| ||||||    
T  22887888 tttatggtatgcttaaccagtgctccgggggcaccgattagcatgaccca 22887937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35851799 - 35851750
Alignment:
Q  1 tttatggtatgcttaacccgtgccacggggg-caccggttagcaggaccc 49  Q
    ||||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  35851799 tttatggtatgcttaaccaatgcctcggggggcaccggttagcaggaccc 35851750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28601104 - 28601152
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||   ||| |||||||||||||||||||    
T  28601104 tttatggtatgcttaaccagtgcactgggagcaccggttagcaggaccc 28601152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24438615 - 24438664
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  24438615 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccca 24438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34333421 - 34333469
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  34333421 tttatggtatgtttaacccgtgccccgggggcaccggttagcaggaccc 34333469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34606399 - 34606447
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  34606399 tttatggtatgcttaacccgtgccccgggagcaccggttagcaggaccc 34606447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4628704 - 4628755
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaa 52  Q
    |||||||||||||||||| |||||   |||||||||||||||||||||||||    
T  4628704 tttatggtatgcttaaccagtgccttaggggcaccggttagcaggacccaaa 4628755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24798451 - 24798400
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaa 52  Q
    ||||| |||||||||||| ||||| |||||||||| ||||||||||||||||    
T  24798451 tttatagtatgcttaaccagtgccccgggggcaccagttagcaggacccaaa 24798400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5239423 - 5239472
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||  ||||| | ||||||| |||||||||||||||    
T  5239423 tttatggtatgcttaacttgtgcccccggggcactggttagcaggaccca 5239472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29993535 - 29993486
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| ||| | ||| |||| ||||||||||||||||    
T  29993535 tttatggtatgcttaaccagtgtcccggaggcatcggttagcaggaccca 29993486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18486099 - 18486143
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcagg 45  Q
    |||||||||||||||||||||||| ||  | ||||||||||||||    
T  18486099 tttatggtatgcttaacccgtgccccgaagacaccggttagcagg 18486143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6158 - 6110
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  6158 tttatggtatgtttaacccgtgccccgggggcaccggttagcaggaccc 6110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 392234 - 392282
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  392234 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23402276 - 23402324
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  23402276 tttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccc 23402324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32929556 - 32929508
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  32929556 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 32929508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4215833 - 4215881
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  4215833 tttatggtatgcttaaccagtgccccgggggcatcggttagcaggaccc 4215881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32985241 - 32985193
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  32985241 tttatggtatgcttaaccagtgccccgggggcaccggttagcagaaccc 32985193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34477617 - 34477569
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||    
T  34477617 tttatggtatgcttaacccgtgccccggaggtaccggttagcaggaccc 34477569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3515904 - 3515953
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    ||||||||||| |||||| ||||| | |||||||||||||||||||||||    
T  3515904 tttatggtatgtttaacctgtgccccaggggcaccggttagcaggaccca 3515953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27433630 - 27433678
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| ||||||||| || |||||||||||||||||| |||||    
T  27433630 tttatggtatgtttaacccgttccccgggggcaccggttagcaagaccc 27433678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 34706865 - 34706907
Alignment:
Q  7 gtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||| ||||| |||||||||||||||||| |||||    
T  34706865 gtatgcttaaccagtgccccgggggcaccggttagcaagaccc 34706907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12145165 - 12145116
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    ||||| |||||||||||| ||||  ||| |||||||||||||||||||||    
T  12145165 tttatagtatgcttaaccagtgctccggaggcaccggttagcaggaccca 12145116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 18276653 - 18276612
Alignment:
Q  8 tatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  18276653 tatgcttaaccagtgcccctggggcaccggttagcaggaccc 18276612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 20898067 - 20898115
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| ||||| | ||||||||||||||| |||||||    
T  20898067 tttatggtatgcttaacctgtgcc-ccggggcaccggttagccggaccca 20898115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35044027 - 35044086
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaagaaatattat 62  Q
    |||||||||||||||||| ||||| | ||||||||||||| || |||||||| |||||||||    
T  35044027 tttatggtatgcttaaccagtgcc-ccggggcaccggttaacatgacccaaa-aaatattat 35044086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2581090 - 2581138
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||||||||||  | || |||| |||||||||||||||||||    
T  2581090 tttatggtatgcttaaccaataccccgggagcaccggttagcaggaccc 2581138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16820990 - 16821038
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  16820990 tttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 16821038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33108721 - 33108673
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  33108721 tttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccc 33108673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4268870 - 4268809
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaagaaatattat 62  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| | |||||||||    
T  4268870 tttatggtatgattaaccagtgccccgagggcaccggttagcaggacccataaaaatattat 4268809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7769076 - 7769124
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  7769076 tttatggcatacttaacccgtgccccgggggcaccggttagcaggaccc 7769124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16536186 - 16536234
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  16536186 tttatggtattcttaaccagtgccccgggggcaccggttagcaggaccc 16536234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29591327 - 29591375
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  29591327 tttatggtatgcttaactagtgccccgggggcaccggttagcaggaccc 29591375  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54054667 - 54054715
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  54054667 tttatggtatgcttaaccagtgccccgggggcaccggttggcaggaccc 54054715  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 55882820 - 55882868
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  55882820 tttatggtatacttaacccgtgcctcgggggcaccggttagtaggaccc 55882868  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12356382 - 12356431
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| |||   |||||||||||||||||||||||||    
T  12356382 tttatggtatgcttaaccagtgttccgggggcaccggttagcaggaccca 12356431  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18067927 - 18067879
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| ||||||||| || |||||||||||||||||| |||||    
T  18067927 tttatggtatgtttaacccgttccccgggggcaccggttagcaagaccc 18067879  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32217182 - 32217230
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| ||| ||||||||||| ||||||||    
T  32217182 tttatggtatgcttaacctgtgccccggaggcaccggttaacaggaccc 32217230  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36395237 - 36395285
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  36395237 tttatggtatgcttaaccagtgccctgggggcaccagttagcaggaccc 36395285  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43202431 - 43202384
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  43202431 tttatggtaagcttaaccagtgcc-cgggggcaccggttagcaggaccc 43202384  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6164231 - 6164280
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| || || || || |||||||||||||||||||    
T  6164231 tttatggtatgcttaaccagtaccccgaggacaccggttagcaggaccca 6164280  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 54897446 - 54897495
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    ||||||||||| |||||| ||| | ||| |||||||||||||||||||||    
T  54897446 tttatggtatgtttaaccagtgtcccggaggcaccggttagcaggaccca 54897495  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4089280 - 4089328
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| |||||| ||||| | |||||||| |||||||||||||    
T  4089280 tttatggtatgtttaaccagtgccccaggggcaccagttagcaggaccc 4089328  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50619224 - 50619271
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| | ||||||||||||||| ||||||    
T  50619224 tttatggtatgcttaaccagtgcc-caggggcaccggttagcgggaccc 50619271  T

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Target: scaffold0425 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10848 - 10897
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  10848 tttatggtatgcttaaccagtgcctcgggggcagcggttagcaggaccca 10897  T

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Target: scaffold0674 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7964 - 7916
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||    
T  7964 tttatggtatgcttaacccgtgccccggaggtaccggttagcaggaccc 7916  T

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Target: scaffold0549 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7407 - 7455
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||    
T  7407 tttatggtatgcttaacccgtgccccggaggtaccggttagcaggaccc 7455  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 53405 - 53344
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaagaaatattat 62  Q
    |||||||||||||||||  ||||| ||| ||||||||||||||||||| ||| |||| ||||    
T  53405 tttatggtatgcttaactagtgccccggaggcaccggttagcaggaccgaaacaaattttat 53344  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 69363 - 69411
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    |||||||||||||||||| ||||| |||| ||||||||||| |||||||    
T  69363 tttatggtatgcttaaccagtgcctcgggagcaccggttagaaggaccc 69411  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 53733 - 53685
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| ||||||||| || |||||||||||||||||| |||||    
T  53733 tttatggtatgtttaacccgttccccgggggcaccggttagcaagaccc 53685  T

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Target: scaffold0206 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11037 - 10987
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggacccaaa 52  Q
    |||||||||||||||||  ||||| |||||||||| ||||||||||||||||    
T  11037 tttatggtatgcttaactggtgcc-cgggggcaccagttagcaggacccaaa 10987  T

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Target: scaffold0190 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15034 - 15083
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccca 50  Q
    |||||||||||||||||| ||||| ||| ||||| ||||| |||||||||    
T  15034 tttatggtatgcttaaccagtgccccggaggcactggttaacaggaccca 15083  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 233991 - 234039
Alignment:
Q  1 tttatggtatgcttaacccgtgccacgggggcaccggttagcaggaccc 49  Q
    ||||||||||| |||||| || |  ||||||||||||||||||||||||    
T  233991 tttatggtatgtttaaccggtactccgggggcaccggttagcaggaccc 234039  T

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