View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_94 (Length: 250)
Name: NF1519_low_94
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_94 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4573236 - 4573003
Alignment:
| Q |
1 |
ttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttgaaattagtttagtattgtttaagatagttataagttagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4573236 |
ttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcatatttgttgaaattagtttagtattgtttaagatagttataagttagtt |
4573137 |
T |
|
| Q |
101 |
atgattattgcttatnnnnnnnngttagttatgattagatgcaaggttggttatattagtgatctttggatcacaatatacagtgtttctcaactttatt |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4573136 |
atgattattgcttataaaaaaaagttagttatgattagatgcaaggttggttatattagtgatcttaggatcacaatatacagtgtttctcaactttatt |
4573037 |
T |
|
| Q |
201 |
attctatcaattccaaaataaatcccaaacgatg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4573036 |
attctatcaattccaaaataaatcccaaacgatg |
4573003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 4559329 - 4559223
Alignment:
| Q |
1 |
ttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttgaaattagtttagtattgtttaagatagttataagttagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||||||| |
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| T |
4559329 |
ttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttaaaattagtttgatatttttcaagatagttataagttagtt |
4559230 |
T |
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| Q |
101 |
atgatta |
107 |
Q |
| |
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||||||| |
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| T |
4559229 |
atgatta |
4559223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4566222 - 4566133
Alignment:
| Q |
1 |
ttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttgaaattagtttagtattgtttaagatagtta |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| | |||||||||| |
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| T |
4566222 |
ttctactgaatggttgcaattccatgcaagtatgtgttagatgtagtttcagatttgttaaaattagtttaatattttggaagatagtta |
4566133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 4587688 - 4587611
Alignment:
| Q |
147 |
ttggttatattagtgatctttggatcacaatatacagtgtttctcaactttattattctatcaattccaaaataaatc |
224 |
Q |
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|||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4587688 |
ttggttatattagtaatcttaggatcacaatataaagtgtttctcaacttttttattctatcaattccaaaataaatc |
4587611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 4566114 - 4566029
Alignment:
| Q |
147 |
ttggttatattagtgatctttggatcacaatatacagtgtttctcaactttattattctatcaattccaaaataaatcccaaacga |
232 |
Q |
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|
||||||||||||||||| || ||||||||||||| ||| |||||||||||| |||| |||||||||| ||||||||| ||||||| |
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| T |
4566114 |
ttggttatattagtgattttaggatcacaatataaagtttttctcaacttttctattttatcaattcccaaataaatctcaaacga |
4566029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 4587749 - 4587717
Alignment:
| Q |
81 |
aagatagttataagttagttatgattattgctt |
113 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
4587749 |
aagatatttataagttagttatgattattgctt |
4587717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16684978 - 16685033
Alignment:
| Q |
1 |
ttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16684978 |
ttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
16685033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 1481875 - 1481920
Alignment:
| Q |
56 |
tgttgaaattagtttagtattgtttaagatagttataagttagtta |
101 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||| |||||||||| |
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| T |
1481875 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
1481920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 31677435 - 31677362
Alignment:
| Q |
35 |
tgttagatatagtttcagatttgttgaaattagtttag-tattgtttaagatagttataagttagttatgatta |
107 |
Q |
| |
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||||||| ||||||| ||||||||| |||||||| | |||| ||||| |||||||||| ||||||||||||| |
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| T |
31677435 |
tgttagagatagtttgagatttgttataattagttaaaatattatttaaaatagttataaattagttatgatta |
31677362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 30551642 - 30551590
Alignment:
| Q |
38 |
tagatatagtttcagatttgttgaaattagtttagtattgtttaagatagtta |
90 |
Q |
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|||||||||||| ||||||||| |||||| || | ||||||||||| |||||| |
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| T |
30551642 |
tagatatagtttgagatttgttaaaattatttgaatattgtttaaggtagtta |
30551590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 37214216 - 37214284
Alignment:
| Q |
35 |
tgttagatatagtttcagatttgttgaaattagtttagtattgtttaagatagttataagttagttatg |
103 |
Q |
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||||||| ||||||| | ||||||| |||||||| ||||||||||| |||||| |||||||||||| |
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| T |
37214216 |
tgttagagatagtttgatatttgttagaattagttggatattgtttaaggtagttaaaagttagttatg |
37214284 |
T |
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