View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_98 (Length: 249)
Name: NF1519_low_98
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_98 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2320307 - 2320541
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2320307 |
tgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactca |
2320406 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2320407 |
gccatcttctcggatcgccccgtagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
2320506 |
T |
|
| Q |
201 |
ccctccgtcgtaaccttgcttccgagatgcttcat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
2320507 |
ccctccgtcgtaaccttgcttccgagatgcttcat |
2320541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2309318 - 2309552
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2309318 |
tgccaaacatggtcctatcatcattgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactca |
2309417 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
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||||| |||| |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
2309418 |
gccataatctctgatcgccctacagctcttcctacttccaaaatgttgtccagcaaccaacacaacatcaacaccgctttttatggcccaacatggcgta |
2309517 |
T |
|
| Q |
201 |
ccctccgtcgtaaccttgcttccgagatgcttcat |
235 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
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| T |
2309518 |
ccctccgtcgtaaccttgctttcgagatgcttcat |
2309552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2292987 - 2293221
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||| |
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| T |
2292987 |
tgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactca |
2293086 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |
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| T |
2293087 |
tccatcttctctgatcgccctacagctcttcctacttccaaaatgttgtccagcaaccaacacaacatcaacaccgcttattatggcccaacatggcgta |
2293186 |
T |
|
| Q |
201 |
ccctccgtcgtaaccttgcttccgagatgcttcat |
235 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
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|
| T |
2293187 |
cccttcgtcgtaaccttgcttccgagatgcttcat |
2293221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2302606 - 2302840
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2302606 |
tgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactca |
2302705 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
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| ||||| ||| |||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2302706 |
gacatctactctgatcgccctaaagcttttcctacttccaaaatgttgtccagcaaccaacacaacatcagctccggtttttatggcccaacatggcgta |
2302805 |
T |
|
| Q |
201 |
ccctccgtcgtaaccttgcttccgagatgcttcat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
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| T |
2302806 |
ccctccgtcgtaaccttgcttccgagatacttcat |
2302840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 2350178 - 2350410
Alignment:
| Q |
3 |
ccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactcagc |
102 |
Q |
| |
|
||||| ||||||||||||||||| || | ||| ||| |||||||||||||||||| |||||| |||| || ||||| | |||||||||||||||||| |
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|
| T |
2350178 |
ccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagc |
2350277 |
T |
|
| Q |
103 |
catcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgtacc |
202 |
Q |
| |
|
||||||||| |||||||| ||||||||||| || ||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
2350278 |
catcttctctgatcgccctagagctcttcccaccgccaaaatcatctccagcaaccaacacaacatcagctccgctttttatggtgcaacatggcgtgcc |
2350377 |
T |
|
| Q |
203 |
ctccgtcgtaaccttgcttccgagatgcttcat |
235 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| |
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|
| T |
2350378 |
ctccgtcgaaaccttgcttctgagatgcttcat |
2350410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2329876 - 2330110
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||| |||| ||||||||| ||||| | ||||||||||||||| |
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|
| T |
2329876 |
tgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcc |
2329975 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
|| ||||||| ||||| || | ||| ||||| ||| || | | ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
2329976 |
tccgtcttctctgatcgtcctaaagcacttcccactaacaaactcatgtccagcaaccagcacaatatcagctccgctttttatggaccaacatggcgta |
2330075 |
T |
|
| Q |
201 |
ccctccgtcgtaaccttgcttccgagatgcttcat |
235 |
Q |
| |
|
| |||||||||||||| || ||||||||||||||| |
|
|
| T |
2330076 |
ctctccgtcgtaacctcgcctccgagatgcttcat |
2330110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2326161 - 2326395
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
||||||||||||||||||||||| | | ||||| | || |||||||||||| |||| |||| ||||||||| ||||| | ||||||||||| ||| |
|
|
| T |
2326161 |
tgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattca |
2326260 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
| ||||||| ||||| || | ||| ||||| | | || | | | || |||||||| |||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
2326261 |
tctctcttctccgatcgtcctaaagcacttcccagtcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggtgta |
2326360 |
T |
|
| Q |
201 |
ccctccgtcgtaaccttgcttccgagatgcttcat |
235 |
Q |
| |
|
|||||||||||||||| || || |||||||||||| |
|
|
| T |
2326361 |
ccctccgtcgtaacctcgcctctgagatgcttcat |
2326395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 41126345 - 41126421
Alignment:
| Q |
158 |
caacacaacatcagctccgctttttatggcccaacatggcgtaccctccgtcgtaaccttgcttccgagatgcttca |
234 |
Q |
| |
|
||||||| ||||| | | |||| |||||| | |||||||||||||| |||||||||||||| | ||||||||||| |
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|
| T |
41126345 |
caacacaccatcaacactgcttcttatggagctacatggcgtaccctacgtcgtaaccttgccgctgagatgcttca |
41126421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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