View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15200_low_1 (Length: 447)
Name: NF15200_low_1
Description: NF15200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15200_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 41652879 - 41653314
Alignment:
| Q |
16 |
taggcagagttggtaatatggcgtagctataaatactctcacaaacctctttctttc---------------------caaaccctaacctctctctttc |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41652879 |
taggcagagttggtaatatggcgtagctataaatactctcacaaacctctttctttctttcttcacttcaattcaattcaaaccctaacctctctctttc |
41652978 |
T |
|
| Q |
95 |
tctgcattgatcaagaagtgaagaacaatgtcgagtttcggagccacgaataccaatcctaacaaatcccatgaggttacttcaccaccttctgattctg |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41652979 |
tctgcattgatcaagaagtgaagaacaatgtcgagtttcggagccacgaataccaatcctaacaaatcccatgaggttacttcaccaccttctgattctg |
41653078 |
T |
|
| Q |
195 |
tttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggtcagtttctcatgttagttgtatcttttctgtttctt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41653079 |
tttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggtcagtttctcattctagttgtatcttttctgtttctt |
41653178 |
T |
|
| Q |
295 |
gcattcatcattcatcattatttcttcttaacaggttctgtgttgggaggtttcacagaatggaaatactcttagtagtactcccaaagcttctatttca |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41653179 |
gcattcatcattcatcattatttcttcttaacaggttctgtgttgggaggtttcaaagaatggaaatactcttagtagtactcccaaagcttctatttct |
41653278 |
T |
|
| Q |
395 |
tatgatcaacctgtaagtacgtgctattaatacatg |
430 |
Q |
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| T |
41653279 |
catgatcaacctgtaagtacgtactattaatgcatg |
41653314 |
T |
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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 28820172 - 28820102
Alignment:
| Q |
188 |
gattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggt |
258 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| |
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| T |
28820172 |
gattctatttccagtctttctttcagtcctaaagccaatttcctcgtcgctacttcctgggacaaccaggt |
28820102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 1466350 - 1466278
Alignment:
| Q |
186 |
ctgattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggt |
258 |
Q |
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||||||||||||||||||| ||||||||||||| |||| || || |||||||||||||||| || ||||| |
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| T |
1466350 |
ctgattctgtttccagtctcaatttcagtcccaaatccaacttacttgttgctacttcttgggataatcaggt |
1466278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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