View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15201_high_3 (Length: 475)
Name: NF15201_high_3
Description: NF15201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15201_high_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 9336821 - 9336377
Alignment:
| Q |
15 |
gaagaataatgttatcagaatggaaggatagtcgttttcattcgaaccgggaggtgcgaagtgaagtgaatatcgatttggcttctatctgtaaatccat |
114 |
Q |
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| T |
9336821 |
gaagaataatgttatcagaatggaaggatagtctttttcattcgaactgggaggtgcgaagtgaagcgaatatcgatttggcttctatctgtaaatccat |
9336722 |
T |
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| Q |
115 |
caccgatcctaaggatcttcgcatccttgaattcggttaatgtctcagtttttggtaggtagggtttttgcttttaacggtgatttgggtggagttagaa |
214 |
Q |
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| T |
9336721 |
catcgatcctaaggaccctcgcatccttgaattcggttaatgtttcagtttttggtaggtagggtttttgcttttaacggtgatttgggtggagttagaa |
9336622 |
T |
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| Q |
215 |
ctttgaatctgttaggtcattttctcaaaaagactgtggtggaaagactgtgacaaggaatatcacatgaagagaaagccaacacagtcccaaccacata |
314 |
Q |
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| T |
9336621 |
ctttgaatctggtaggtcattttctcaaaaagac--------------tgtgacaaggaatatcacacgaagagaaagccaagacagtcccaaccac--a |
9336538 |
T |
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| Q |
315 |
tatatacagccacaagaacattaatcagaagagtgaagaccaaaaccagctggacaacaatgttgatgaacgagttacttgtactcactctcattttcga |
414 |
Q |
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| T |
9336537 |
tatatacagccacaagaacattaatcagaagagtgaagaccaaaaccagctggacaacaatgttgatgaacgagttacttgtactcactctcattttcga |
9336438 |
T |
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| Q |
415 |
tatgatctattattaatctttgcagttcaaggnnnnnnngaatgttcctgaataaatgatc |
475 |
Q |
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| T |
9336437 |
tatgatctattattaatctttgcagttcaaggaaaaaaagaatgttcctgaataaatgatc |
9336377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 8209426 - 8209356
Alignment:
| Q |
83 |
aatatcgatttggcttctatctgtaaatccatcaccgatcctaaggatcttcgcatccttgaattcggtta |
153 |
Q |
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| T |
8209426 |
aatatcgatttagcttctctctttcactccatcaccgatcctaacgatcctcgcattcgtcaattcggtta |
8209356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 42365268 - 42365183
Alignment:
| Q |
68 |
gtgcgaagtgaagtgaatatcgatttggcttctatctgtaaatccatcaccgatcctaaggatcttcgcatccttgaattcggtta |
153 |
Q |
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| T |
42365268 |
gtgcgaaatgaagccaatattgatctggcttctctctgtgactcaatcaccgatcctaaagaccctcgcatccgtgaattcggtta |
42365183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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