View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15201_high_5 (Length: 230)
Name: NF15201_high_5
Description: NF15201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15201_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 46024472 - 46024279
Alignment:
| Q |
20 |
acagaagaataaaccttagaatttccaaatgaaattccactacaccctgcagctgtagaaccttcatcatcaggaatagaacagactatagtttcctcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
46024472 |
acagaagaataaaccttagaatttccaaatgaaattccactacaccctgcagctgtagaaccttcatcatcaggaatagaacaaactatagtttcttcaa |
46024373 |
T |
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| Q |
120 |
caatcgcgtcaagttggtcatttttccatggcatcatgacagtggaataaacagatgatgatgcagaaactgcatggttcttcatcattgcatg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46024372 |
caatcgcgtcaagttggtcatttttccatggcatcatgacagtggaataaacagatgatgatgaagaaactgcatggttcttcatcattgcatg |
46024279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 46264895 - 46265088
Alignment:
| Q |
20 |
acagaagaataaaccttagaatttccaaatgaaattccactacaccctgcagctgtagaaccttcatcatcaggaatagaacagactatagtttcctcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
46264895 |
acagaagaataaaccttagaatttccaaatgaaattccactacaccctgcagctgtagaaccttcatcatcaggaatagaacaaactatagtttcttcaa |
46264994 |
T |
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| Q |
120 |
caatcgcgtcaagttggtcatttttccatggcatcatgacagtggaataaacagatgatgatgcagaaactgcatggttcttcatcattgcatg |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46264995 |
caatcgcgtcaagttggtcattttaccatggcatcatgacagtggaataaacagatgatgattaagaaactgcatggttcttcatcattgcatg |
46265088 |
T |
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