View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15201_low_1 (Length: 696)

Name: NF15201_low_1
Description: NF15201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15201_low_1
NF15201_low_1
[»] chr6 (5 HSPs)
chr6 (19-684)||(28046375-28047042)
chr6 (540-609)||(28034681-28034750)
chr6 (532-606)||(28074051-28074125)
chr6 (553-606)||(27916344-27916397)
chr6 (525-606)||(28016910-28016991)
[»] chr7 (3 HSPs)
chr7 (35-276)||(8448775-8449015)
chr7 (23-83)||(8449050-8449110)
chr7 (526-578)||(27933875-27933927)
[»] chr1 (1 HSPs)
chr1 (34-242)||(40557253-40557460)
[»] chr2 (1 HSPs)
chr2 (80-258)||(30912952-30913126)
[»] chr8 (1 HSPs)
chr8 (18-258)||(11969194-11969435)
[»] chr5 (1 HSPs)
chr5 (34-148)||(31847819-31847933)


Alignment Details
Target: chr6 (Bit Score: 611; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 19 - 684
Target Start/End: Original strand, 28046375 - 28047042
Alignment:
Q  19 gatgggagttttcttggaacacctcaacgagctggcttcagaggcctcatgagatattctgcaggttactacctatccggtttctctggtttcatctcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28046375 gatgggagttttcttggaacacctcaacgagctggcttcagaggcctcatgagatattctgcaggttactacctatccggtttctctggtttcatctcta 28046474  T
Q  119 attcagaagacattttacttgctgagctctctgcaatctaccacggtttaacttctggctcgagacttggacatcactgaatttgtgtgttacaacgact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28046475 attcagaagacattttacttgctgagctctctgcaatctaccacggtttaacttctggctcgagacttggacatcactgaatttgtgtgttacaacgact 28046574  T
Q  219 cccttctttgcttaaatctcattacaggaccagccatgaattttcacacttatgctgcactgccctcatcgctgaagttaaggacctgctatccgccaac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28046575 cccttctttgcttaaatctcattacaggaccagccatgaattttcacacttatgctgcgctgccctcatcgctgaagttaaggacctgctatccgccaac 28046674  T
Q  319 aatactgccatcttatgacttcttaatccatatcttattgttaatggtcatagtagggcaaagaaacgcagtttcaaaatcctaacatttataatacaaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28046675 aatactgccatcttatgacttcttaatccatatcttattgttaatggtcatagtagggcaaagaaacgcagtttcaaaatcctaacatttataatacaaa 28046774  T
Q  419 actcattactcattagtggcaaaccttcttcagtcaaaaactagtttgaaattacttctatttttatattaaaagaaagttaaagaaacaatcattttat 518  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28046775 agtcattactcattagtggcaaaccttcttcagtcaaaaactagtttgaaattacttctatttttatattaaaagaaagttaaagaaacaatcattttat 28046874  T
Q  519 ttttatttgttaatcttgtcctaagctctatttaaagagtaaattgtaataattttcattttatctttttatcaatcaaaatgaatttgaatctctccat 618  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28046875 ttttatttgttaatcttgtcctaagctctatttaaagagtaaagtgtaataattttcattttatctttttatcaatcaaaatgaatttgaatctctccat 28046974  T
Q  619 taagcttatatctac--cnnnnnnnnnngctctcaagcttatttacctatgacataaatcttcatctc 684  Q
    |||||||||||||||             ||||||||||||||||||||||||||||||||||||||||    
T  28046975 taagcttatatctacaaaaaaaaaaaaagctctcaagcttatttacctatgacataaatcttcatctc 28047042  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 609
Target Start/End: Original strand, 28034681 - 28034750
Alignment:
Q  540 taagctctatttaaagagtaaattgtaataattttcattttatctttttatcaatcaaaatgaatttgaa 609  Q
    |||||||||  ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28034681 taagctctacataaagagcaaattgtaataattttcagtttatctttttatcaatcaaaatgaatttgaa 28034750  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 606
Target Start/End: Original strand, 28074051 - 28074125
Alignment:
Q  532 tcttgtcctaagctctatttaaagagtaaattgtaataattttcattttatctttttatcaatcaaaatgaattt 606  Q
    |||| |||||||||||||  |||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  28074051 tcttttcctaagctctatagaaagagaaaattgcaatcattttcattttatctttttatcaatcaatatgaattt 28074125  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 553 - 606
Target Start/End: Original strand, 27916344 - 27916397
Alignment:
Q  553 aagagtaaattgtaataattttcattttatctttttatcaatcaaaatgaattt 606  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||| ||||||||    
T  27916344 aagagcaaattgtaatcattttaattttatctttttatcaatcaatatgaattt 27916397  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 606
Target Start/End: Original strand, 28016910 - 28016991
Alignment:
Q  525 ttgttaatcttgtcctaagctctatttaaagagtaaattgtaataattttcattttatctttttatcaatcaaaatgaattt 606  Q
    ||||| ||||| |||| | ||||||  |||||| |||||| ||| ||||||||||||||||||| |||||||| || |||||    
T  28016910 ttgttgatcttttcctcatctctatagaaagagcaaattgcaattattttcattttatctttttgtcaatcaatattaattt 28016991  T

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Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 35 - 276
Target Start/End: Complemental strand, 8449015 - 8448775
Alignment:
Q  35 gaacacctcaacgagctggcttcagaggcctcatgagatattctgcaggttactacctatccggtttctctggtttcatctctaattcagaagacatttt 134  Q
    ||||||||||||||||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||||| |||||| | |||||||||||||||||    
T  8449015 gaacacctcaacgagctggattcagaggccttattagaaattctgcaggctactacctttccggtttctctggattcatccccaattcagaagacatttt 8448916  T
Q  135 acttgctgagctctctgcaatctaccacggtttaacttctggctcgagacttggacatcactgaatttgtgtgttacaacgactcccttctttgcttaaa 234  Q
    |||||||||||| ||| | |||||||| ||||| | | |||| ||||||| | |||||||| ||||||||||| |||| |||||| ||||||||||||||    
T  8448915 acttgctgagctatctactatctaccatggttt-agtgctggttcgagacatagacatcaccgaatttgtgtgctacaccgactcacttctttgcttaaa 8448817  T
Q  235 tctcattacaggaccagccatgaattttcacacttatgctgc 276  Q
     |||||| |||| ||||||||||||| ||||| |||||||||    
T  8448816 cctcattgcaggcccagccatgaattatcacagttatgctgc 8448775  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 8449110 - 8449050
Alignment:
Q  23 ggagttttcttggaacacctcaacgagctggcttcagaggcctcatgagatattctgcagg 83  Q
    |||||| ||| |||||||||||||||||||| ||||||||||| || ||| ||||||||||    
T  8449110 ggagttgtctaggaacacctcaacgagctggattcagaggccttattagaaattctgcagg 8449050  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 526 - 578
Target Start/End: Original strand, 27933875 - 27933927
Alignment:
Q  526 tgttaatcttgtcctaagctctatttaaagagtaaattgtaataattttcatt 578  Q
    |||| ||||| | ||||||||||| ||||||||||| |||||| |||||||||    
T  27933875 tgttgatctttttctaagctctatataaagagtaaagtgtaatcattttcatt 27933927  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 40557460 - 40557253
Alignment:
Q  34 ggaacacctcaacgagctggcttcagaggcctcatgagatattctgcaggttactacctatccggtttctctggtttcatctctaattcagaagacattt 133  Q
    |||||||| ||| |||||| ||||||| ||||||| ||| ||| ||||||||  ||||| |  ||||||||||| |||||| ||||||||||| |||| |    
T  40557460 ggaacaccgcaatgagctgacttcagaagcctcattagaaattttgcaggtttttacctttatggtttctctgggttcatccctaattcagaaaacatat 40557361  T
Q  134 tacttgctgagctctctgcaatctaccacggtttaacttctggctcgagacttggacatcactgaatttgtgtgttacaacgactcccttctttgcttaa 233  Q
    ||   |||||| |||||| ||| ||||||||||| ||| |||||||||||| |||| |   |  |||| |||||||| |  |||||| |||||||| |||    
T  40557360 tatcagctgagatctctgaaatataccacggttt-actactggctcgagacatggatactccgaaattcgtgtgttatactgactccattctttgcataa 40557262  T
Q  234 atctcatta 242  Q
    |||||||||    
T  40557261 atctcatta 40557253  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 258
Target Start/End: Complemental strand, 30913126 - 30912952
Alignment:
Q  80 caggttactacctatccggtttctctggtttcatctctaattcagaagacattttacttgctgagctctctgcaatctaccacggtttaacttctggctc 179  Q
    |||||| |||||| || ||||||||||| ||||| |||  |||||| ||||| ||||||| ||||||||| || |||||||| |||||| ||  ||||||    
T  30913126 caggtttctacctttctggtttctctgggttcat-tct--ttcagatgacatattacttgttgagctctcagctatctaccatggttta-ctgttggctc 30913031  T
Q  180 gagacttggacatcactgaatttgtgtgttacaacgactcccttctttgcttaaatctcattacaggaccagccatgaa 258  Q
    ||||| |||| |   |||| || |||||||| |  || |||||||| | ||||||||||||||| || || ||||||||    
T  30913030 gagacatggatactcctgatttcgtgtgttatatagattcccttctctacttaaatctcattaccggtcccgccatgaa 30912952  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 11969194 - 11969435
Alignment:
Q  18 agatgggagttttcttggaacacctcaacgagctggcttcagaggcctcatgagatattctgcaggttactacctatccggtttctctggtttcatctct 117  Q
    ||||||||| | ||| |||||||| ||||||||||| ||  |||| ||| | ||| ||| |||||||| |||||  || ||||| ||||| |||||  ||    
T  11969194 agatgggagctgtctaggaacaccacaacgagctggttttggaggtctcgttagaaattttgcaggtttctaccattctggtttttctgggttcattcct 11969293  T
Q  118 aattcagaagacattttacttgctgagctctctgcaa--tctaccacggtttaacttctggctcgagacttggacatcactgaatttgtgtgttacaacg 215  Q
    ||||||||  | || |||||| ||||||||||  | |  ||||||| ||||| |||  ||||||||||| |||| |   || | ||  ||||||| |  |    
T  11969294 aattcagataagatattacttactgagctctcaactatgtctaccatggttt-actattggctcgagacatggatactcctaatttcatgtgttatacgg 11969392  T
Q  216 actcccttctttgcttaaatctcattacaggaccagccatgaa 258  Q
    | ||||| |||||||||||||||||||| || |||||||||||    
T  11969393 attccctgctttgcttaaatctcattaccggtccagccatgaa 11969435  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 31847819 - 31847933
Alignment:
Q  34 ggaacacctcaacgagctggcttcagaggcctcatgagatattctgcaggttactacctatccggtttctctggtttcatctctaattcagaagacattt 133  Q
    ||||| || ||| ||| ||||||  |||| ||||| ||| |||||||||||| ||| || || ||||||||||| |||||  |||||||| | ||||| |    
T  31847819 ggaactccacaatgagatggctttggaggtctcattagaaattctgcaggtttctatctttctggtttctctggattcattcctaattcatatgacatat 31847918  T
Q  134 tacttgctgagctct 148  Q
    ||| || ||||||||    
T  31847919 tacatgttgagctct 31847933  T

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