View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15201_low_2 (Length: 540)

Name: NF15201_low_2
Description: NF15201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15201_low_2
NF15201_low_2
[»] chr2 (2 HSPs)
chr2 (10-522)||(4956416-4956929)
chr2 (293-380)||(45268273-45268360)
[»] chr8 (2 HSPs)
chr8 (57-522)||(35827974-35828442)
chr8 (244-353)||(24948025-24948133)
[»] chr7 (2 HSPs)
chr7 (281-472)||(40353920-40354107)
chr7 (368-400)||(43305814-43305846)
[»] chr1 (1 HSPs)
chr1 (244-353)||(25347328-25347436)
[»] chr3 (1 HSPs)
chr3 (282-510)||(27312203-27312431)
[»] chr5 (3 HSPs)
chr5 (244-353)||(19351148-19351256)
chr5 (258-403)||(31892668-31892813)
chr5 (245-381)||(31903896-31904032)
[»] chr6 (1 HSPs)
chr6 (244-353)||(12853423-12853531)
[»] chr4 (2 HSPs)
chr4 (293-406)||(54659647-54659760)
chr4 (368-400)||(44721141-44721173)


Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 10 - 522
Target Start/End: Original strand, 4956416 - 4956929
Alignment:
Q  10 catcatcattgtcaccaaaaccatcatcgacattacaaagcctgtcgtcctcaacataaaacttaatctgtttgaacccttttttaaaccacctattctc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956416 catcatcattgtcaccaaaaccatcatcgacattacaaagcctgtcgtcctcaacataaaacttaatctgtttgaacccttttttaaaccacctattctc 4956515  T
Q  110 cataatatcaggtattgcaatcctagtttcaggcttagtatcaagaagacgaacaagcagtttcgataaatctggtgaaaaccacctaggacaccgaaac 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||    
T  4956516 cataatatcaggtatcgcaatcctagtttcaggcttagtatcaagaagacgaacaagcagttttgataagtccggtgaaaaccacctgggacaccgaaac 4956615  T
Q  210 tcacccttgtaaattttcttatacattgccataacattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaagaccaaa 309  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956616 tcacccttgtaaatcttcttatacattgccataacattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaagaccaaa 4956715  T
Q  310 gatcaacctttgcaccatcataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccacaaaaagtatgaaacaaaccatcttgtctaat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956716 gatcaacctttgcaccatcataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccacaaaaagtatgaaacaaaccatcttgtctaat 4956815  T
Q  410 ttgatcagaaacagcactcaaaccaaaatcagacactttcaaattaccattctcatcaagcaacaaattttcaggcttaagatccctatgataaac-acc 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4956816 ttgatcagaaacagcactcaaaccaaaatcagacactttcaaattaccattctcatcaagcaacaaattttcaggcttaagatccctatgataaacaacc 4956915  T
Q  509 tctagcatgacaaa 522  Q
    ||||||||||||||    
T  4956916 tctagcatgacaaa 4956929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 45268273 - 45268360
Alignment:
Q  293 aacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccacaa 380  Q
    ||||||||||||||||| |||| | ||||  |||||||||||  || |   |||||| ||||||||||||||||||||||| ||||||    
T  45268273 aacaccacaagaccaaatatcagcttttgatccatcataaccaatcttcttcaaaacttcaggtgcaacataagcaggagtcccacaa 45268360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 57 - 522
Target Start/End: Complemental strand, 35828442 - 35827974
Alignment:
Q  57 tcctcaacataaaacttaatctgtttgaacccttttttaaaccacctattctccataatatcaggtattgcaatcctagtttcaggcttagtatcaagaa 156  Q
    |||||||||||||| ||||| || || || ||| | |||||||| | |||||||||||| ||||| || | ||||||||||| ||| ||| |||||||||    
T  35828442 tcctcaacataaaatttaatatgcttaaaacctatcttaaaccaacgattctccataatctcaggaatagaaatcctagtttgaggtttaatatcaagaa 35828343  T
Q  157 gacgaacaagcagtttcgataaatctggtgaaaaccacctaggacaccgaaactcacccttgtaaattttcttatacattgccataacatttt---gatc 253  Q
    | | |  ||| ||  |    |  |||||||||||||| |||||||||| ||| ||||| || ||||| ||||||||||| ||||||||||| |   ||||    
T  35828342 gcctagtaagaagactaacaagttctggtgaaaaccatctaggacacctaaattcacctttataaatcttcttatacatagccataacattattaggatc 35828243  T
Q  254 atgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagccaaaacctca 353  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  35828242 atgaaaaggtaaataaccagccatcaaaacaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataacctttcctagacaaaacctca 35828143  T
Q  354 ggtgcaacataagcaggagtaccacaaaaagtatgaaacaaaccatcttgtctaatttgatcagaaacagcactcaaaccaaaatcagacactttcaaat 453  Q
    || |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||| ||| || |||||||| | ||||||||| || ||||| |  |    
T  35828142 ggagcaacataagcaggtgtaccacaaaaagtatgaaacaacccatcttgcttaatttcatccgacacagcactaagaccaaaatctgaaactttaaggt 35828043  T
Q  454 taccattctcatcaagcaacaaattttcaggcttaagatccctatgataaacacctctagcatgacaaa 522  Q
    |||| || |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  35828042 tacctttttcatcaagcaacaaattttcaggctttagatctctatgaaaaacacctctagcatgacaaa 35827974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 24948133 - 24948025
Alignment:
Q  244 cattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagc 343  Q
    |||||||||||| |||||| ||||||| || |||||||| |||||||| |||||||||||| |||||||||||||| | |||||||||| | |  ||| |    
T  24948133 cattttgatcat-aaaaggcaaataacaagtcatcaaaagaaacaaaataacaccacaagatcaaagatcaaccttagtaccatcataaacataactaac 24948035  T
Q  344 caaaacctca 353  Q
    ||||||||||    
T  24948034 caaaacctca 24948025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 281 - 472
Target Start/End: Original strand, 40353920 - 40354107
Alignment:
Q  281 aacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccacaa 380  Q
    ||||||||||| |||| ||||| |||||||||||||||| | |||||| |||| ||  ||| ||||||| ||| | | ||||||    ||||||| ||||    
T  40353920 aacaaacaaaataacaacacaaaaccaaagatcaaccttagtaccatcgtaactttaactaaccaaaacttcatgagtaacata----ggagtacaacaa 40354015  T
Q  381 aaagtatgaaacaaaccatcttgtctaatttgatcagaaacagcactcaaaccaaaatcagacactttcaaattaccattctcatcaagcaa 472  Q
    |||||| |||||| |||||||||||||||||||| |||| ||  ||| |||||||||||||| | ||||||||||| ||| |||||||||||    
T  40354016 aaagtaagaaacagaccatcttgtctaatttgatgagaagcaatacttaaaccaaaatcagaaagtttcaaattacaattatcatcaagcaa 40354107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 43305846 - 43305814
Alignment:
Q  368 aggagtaccacaaaaagtatgaaacaaaccatc 400  Q
    ||||||||||||||||||| |||||||||||||    
T  43305846 aggagtaccacaaaaagtaagaaacaaaccatc 43305814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 25347436 - 25347328
Alignment:
Q  244 cattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagc 343  Q
    |||||||||||| |||||| ||||||| || |||||||| |||||||| |||||||||||| |||||||||||||| | |||||||||| | |  ||| |    
T  25347436 cattttgatcat-aaaaggcaaataacaagtcatcaaaagaaacaaaataacaccacaagatcaaagatcaaccttagtaccatcataaacataactaac 25347338  T
Q  344 caaaacctca 353  Q
    ||||||||||    
T  25347337 caaaacctca 25347328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 282 - 510
Target Start/End: Original strand, 27312203 - 27312431
Alignment:
Q  282 acaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccacaaa 381  Q
    |||||||||||||| ||||| ||||||| |||||| || ||||||||||| |||  | |||| | |||||||||||| || |||||||| || |||||||    
T  27312203 acaaacaaaacaacgccacatgaccaaacatcaactttggcaccatcatatcctcgcttagcaagaacctcaggtgccacgtaagcaggggttccacaaa 27312302  T
Q  382 aagtatgaaacaaaccatcttgtctaatttgatcagaaacagcactcaaaccaaaatcagacactttcaaattaccattctcatcaagcaacaaattttc 481  Q
     |||||||| ||| |||||   ||  || ||||  |  || ||||| || || ||||| || ||||| ||||| ||||| ||||| |  |||||||| ||    
T  27312303 gagtatgaagcaatccatcggatcggatctgatttgtgactgcacttaacccgaaatccgaaacttttaaattcccattttcatctaataacaaattctc 27312402  T
Q  482 aggcttaagatccctatgataaacacctc 510  Q
     ||||||||||||| |||| |||| ||||    
T  27312403 cggcttaagatcccgatgaaaaacccctc 27312431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 19351256 - 19351148
Alignment:
Q  244 cattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagc 343  Q
    |||||||||||| |||||| ||||||| || |||||||| |||||||| |||||||||||| ||||||||||| || | |||||||||| | |  ||| |    
T  19351256 cattttgatcat-aaaaggcaaataacaagtcatcaaaagaaacaaaataacaccacaagatcaaagatcaacattagtaccatcataaacataactaac 19351158  T
Q  344 caaaacctca 353  Q
    ||||||||||    
T  19351157 caaaacctca 19351148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 403
Target Start/End: Complemental strand, 31892813 - 31892668
Alignment:
Q  258 aaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagccaaaacctcaggtg 357  Q
    ||||||| ||||||||| |  |||||||| | |||||| ||||||||||||| |||| | || | |||||||||||| |||||    |  || ||||| |    
T  31892813 aaaggtacataaccagcaagtaaaacaaaaagaacaactccacaagaccaaatatcagctttggaaccatcataacccttccttttgatcacttcaggag 31892714  T
Q  358 caacataagcaggagtaccacaaaaagtatgaaacaaaccatcttg 403  Q
    |||||||||||||||| ||||||   ||||| ||||||||||||||    
T  31892713 caacataagcaggagttccacaagttgtatgcaacaaaccatcttg 31892668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 381
Target Start/End: Original strand, 31903896 - 31904032
Alignment:
Q  245 attttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagcc 344  Q
    |||| |||||| ||| || | |||||||||||  | ||||||||  | || |||||| ||||||| ||| ||||| || |||||||||||| || | ||     
T  31903896 atttggatcattaaatggaagataaccagccacaagaacaaacagtataataccacatgaccaaatatccaccttagctccatcataacctctcttcgct 31903995  T
Q  345 aaaacctcaggtgcaacataagcaggagtaccacaaa 381  Q
    |||| ||| ||||| ||||| ||||| || |||||||    
T  31903996 aaaatctccggtgccacatatgcaggtgttccacaaa 31904032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 12853423 - 12853531
Alignment:
Q  244 cattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagc 343  Q
    |||||||||||| |||||| ||||||| || |||||||| ||| |||| |||||||||| | |||||||||||||| | |||||||||| | |  ||| |    
T  12853423 cattttgatcat-aaaaggcaaataacaagtcatcaaaagaaagaaaataacaccacaacatcaaagatcaaccttagtaccatcataaacataactaac 12853521  T
Q  344 caaaacctca 353  Q
    ||||||||||    
T  12853522 caaaacctca 12853531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 406
Target Start/End: Complemental strand, 54659760 - 54659647
Alignment:
Q  293 aacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccacaaaaagtatgaaac 392  Q
    ||||||||||||||||| |||| |||| ||||| || ||||| ||| | || | |||||| || | |||||| || |||||||||||    ||||| |||    
T  54659760 aacaccacaagaccaaatatcagccttagcaccgtcgtaacccttcttcgcgataacctccggcgaaacatacgccggagtaccacatgtggtatgcaac 54659661  T
Q  393 aaaccatcttgtct 406  Q
    || |||||||||||    
T  54659660 aatccatcttgtct 54659647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 44721141 - 44721173
Alignment:
Q  368 aggagtaccacaaaaagtatgaaacaaaccatc 400  Q
    ||||||||||||||||||| |||||||||||||    
T  44721141 aggagtaccacaaaaagtaagaaacaaaccatc 44721173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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