View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15201_low_4 (Length: 310)

Name: NF15201_low_4
Description: NF15201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15201_low_4
NF15201_low_4
[»] chr2 (4 HSPs)
chr2 (189-310)||(23864082-23864202)
chr2 (8-94)||(23863901-23863987)
chr2 (8-65)||(7381706-7381765)
chr2 (8-62)||(34392179-34392235)
[»] chr4 (6 HSPs)
chr4 (8-65)||(12473718-12473777)
chr4 (8-65)||(12528127-12528186)
chr4 (8-50)||(51811945-51811987)
chr4 (8-65)||(21260808-21260867)
chr4 (8-65)||(33249472-33249531)
chr4 (8-65)||(35869669-35869728)
[»] scaffold0485 (1 HSPs)
scaffold0485 (242-297)||(8071-8124)
[»] scaffold0032 (1 HSPs)
scaffold0032 (8-65)||(34208-34267)
[»] chr3 (5 HSPs)
chr3 (8-65)||(50934514-50934573)
chr3 (18-65)||(32319473-32319522)
chr3 (9-65)||(37742739-37742797)
chr3 (8-65)||(47186189-47186248)
chr3 (8-65)||(47426364-47426423)
[»] chr1 (3 HSPs)
chr1 (9-65)||(2569051-2569109)
chr1 (19-65)||(29119433-29119481)
chr1 (8-65)||(32676150-32676209)
[»] chr7 (2 HSPs)
chr7 (8-65)||(48250168-48250227)
chr7 (8-65)||(35341550-35341609)
[»] chr5 (5 HSPs)
chr5 (8-61)||(19357359-19357414)
chr5 (8-65)||(11607632-11607691)
chr5 (8-65)||(33858636-33858695)
chr5 (8-65)||(38010712-38010771)
chr5 (8-44)||(39570141-39570177)
[»] scaffold0263 (1 HSPs)
scaffold0263 (8-50)||(23197-23239)
[»] chr8 (1 HSPs)
chr8 (8-65)||(41179661-41179720)
[»] chr6 (1 HSPs)
chr6 (8-65)||(5403974-5404033)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 23864082 - 23864202
Alignment:
Q  189 ataaatttataactgggatgtaaatgataggtgttacttaaaggtgtcaacatagttagaatatctaaatttcatcttaatatttaaccacactcatagt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23864082 ataaatttataactgggatgtaaatgataggtgttacttaaag-tgtcaacatagttagaatatctaaatttcatcttaatatttaaccacactcatagt 23864180  T
Q  289 tcataaaaagaataatcttgct 310  Q
    ||||||||||||||||||||||    
T  23864181 tcataaaaagaataatcttgct 23864202  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 23863901 - 23863987
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaataatataccattggtaccttaaaccttaatggtacacaagtggtatccagg 94  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23863901 agtaacattggtaggtggcacactctaattgaccaataatataccattggtaccttaaaccttaatggtacacaagtggtatccagg 23863987  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 7381765 - 7381706
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaata--atataccattggtaccttaa 65  Q
    |||||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  7381765 agtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaa 7381706  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 34392179 - 34392235
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtacct 62  Q
    ||||| || ||||||||||||||||||||||||||||   |||||||||||||||||    
T  34392179 agtaagattggtaggtggcacactctaattggccaatggtatataccattggtacct 34392235  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 12473777 - 12473718
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  12473777 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaa 12473718  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 12528186 - 12528127
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  12528186 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaa 12528127  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 51811987 - 51811945
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaataatata 50  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  51811987 agtaacattggtaggtggcatactctaattggccaataatata 51811945  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 21260867 - 21260808
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| |||||||| |||||||||||||||||||   ||||| ||||||||||||||    
T  21260867 agtaacattggtaggtgacacactctaattggccaatgatatatatcattggtaccttaa 21260808  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 33249472 - 33249531
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| |||||||| |||||||||||||||||||   |||||||||| |||||||||    
T  33249472 agtaacattggtaggtgacacactctaattggccaattgtatataccatttgtaccttaa 33249531  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 35869669 - 35869728
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| ||||||||||||| | ||||||| ||||   ||||||||||||||||||||    
T  35869669 agtaacattggtaggtggcacattataattggtcaatggtatataccattggtaccttaa 35869728  T

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Target: scaffold0485 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 8071 - 8124
Alignment:
Q  242 agttagaatatctaaatttcatcttaatatttaaccacactcatagttcataaaaa 297  Q
    |||| |||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  8071 agttggaatatctaagtttcatcttaatatttaaccacact--tagttcataaaaa 8124  T

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Target: scaffold0032 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 34267 - 34208
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaataa--tataccattggtaccttaa 65  Q
    ||||| || |||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  34267 agtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaa 34208  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 50934573 - 50934514
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||||    
T  50934573 agtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaa 50934514  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 32319473 - 32319522
Alignment:
Q  18 gtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||    
T  32319473 gtaggtggcacactctaattggccaatggtatataccattggtaccttaa 32319522  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 37742797 - 37742739
Alignment:
Q  9 gtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    ||||||| ||||||||||| |||||||||| |||||   ||||||||||||||||||||    
T  37742797 gtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaa 37742739  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 47186248 - 47186189
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaa--taatataccattggtaccttaa 65  Q
    |||||||| |||| |||||||||||| |||||||||  | ||||| ||||||||||||||    
T  47186248 agtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaa 47186189  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 47426423 - 47426364
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| | |||||| |||||||||||||||||||   |||||| |||||||||||||    
T  47426423 agtaacattgataggtgacacactctaattggccaatggtatatactattggtaccttaa 47426364  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 2569109 - 2569051
Alignment:
Q  9 gtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    ||||||| |||||||||||||||||||||||| |||   ||||||||||||||||||||    
T  2569109 gtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaa 2569051  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 29119433 - 29119481
Alignment:
Q  19 taggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  29119433 taggtggcacactctaattggccaatggtatataccattggtaccttaa 29119481  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 32676209 - 32676150
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| |||||||||  || ||||||||||||||   ||||||||||||||||||||    
T  32676209 agtaacattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaa 32676150  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 48250227 - 48250168
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| |||||||||||||||||||||| |||||   ||||| ||||||||||||||    
T  48250227 agtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaa 48250168  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 35341609 - 35341550
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| ||||||||||||||| ||||||| ||||   ||||| ||||||||||||||    
T  35341609 agtaacattggtaggtggcacactataattggtcaatggtatatatcattggtaccttaa 35341550  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 19357359 - 19357414
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtacc 61  Q
    ||||| || ||||||||||||||||||||||||||||   ||||||||||||||||    
T  19357359 agtaatattggtaggtggcacactctaattggccaatggtatataccattggtacc 19357414  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 11607632 - 11607691
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    ||||| || ||||||||||||||| ||||||| ||||   ||||||||||||||||||||    
T  11607632 agtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaa 11607691  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 33858636 - 33858695
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| ||||||||||||||| ||||||| ||||   |||||| |||||||||||||    
T  33858636 agtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaa 33858695  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 38010712 - 38010771
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaa--taatataccattggtaccttaa 65  Q
    |||||||| |||| |||||||||||| |||||||||  | ||||| ||||||||||||||    
T  38010712 agtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaa 38010771  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 39570141 - 39570177
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat 44  Q
    |||||||| |||||||| |||||||||||||||||||    
T  39570141 agtaacattggtaggtgacacactctaattggccaat 39570177  T

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Target: scaffold0263 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 23197 - 23239
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaataatata 50  Q
    ||||| || |||||||||||||||||||||||||||| |||||    
T  23197 agtaaaattggtaggtggcacactctaattggccaatgatata 23239  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 41179661 - 41179720
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaat--aatataccattggtaccttaa 65  Q
    |||||||| |||||||| |||||| ||||||||||||   ||||| ||||||||||||||    
T  41179661 agtaacatcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaa 41179720  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 5403974 - 5404033
Alignment:
Q  8 agtaacataggtaggtggcacactctaattggccaata--atataccattggtaccttaa 65  Q
    |||||||| ||||||||||| ||||||| || ||||||  |||||||||| |||||||||    
T  5403974 agtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaa 5404033  T

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