View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15202_low_4 (Length: 202)
Name: NF15202_low_4
Description: NF15202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15202_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 38173497 - 38173655
Alignment:
| Q |
26 |
cgccgccaacatcaaagcaccagctagtcgtttcctcggaatcaacttctttatcttcagaattagaatcaacgatctagccttcttcatactcatactc |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38173497 |
cgccgccaacatcaaagcaccagctagtcgtttcctcggaatcatcttctttatcttcagaattagaatcaacgatctcgccttcttcatactcatactc |
38173596 |
T |
|
| Q |
126 |
ctcgctctcggttctttcaatccaactactatcactatccatttcattatcatcatcat |
184 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38173597 |
ctcactctcggttctttcaatccaactactatcactatccatttcattaccatcatcat |
38173655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University