View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15203_high_2 (Length: 407)
Name: NF15203_high_2
Description: NF15203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15203_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 2905998 - 2906401
Alignment:
| Q |
1 |
atcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatctag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2905998 |
atcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatctag |
2906097 |
T |
|
| Q |
101 |
actaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcgct |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906098 |
actagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcgct |
2906197 |
T |
|
| Q |
201 |
gccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttgta |
300 |
Q |
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| T |
2906198 |
gccgccaccaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccgccaccaacaggggaatgagaaggggattttgta |
2906297 |
T |
|
| Q |
301 |
ccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttggatgatgtccatctcatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |
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| T |
2906298 |
ccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaatt |
2906397 |
T |
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| Q |
401 |
gaac |
404 |
Q |
| |
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|||| |
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| T |
2906398 |
gaac |
2906401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 2853970 - 2854373
Alignment:
| Q |
1 |
atcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatctag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853970 |
atcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatctag |
2854069 |
T |
|
| Q |
101 |
actaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcgct |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854070 |
actagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcgct |
2854169 |
T |
|
| Q |
201 |
gccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttgta |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2854170 |
gccgccaccaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgccaccaccaacaggggaatgagaaggggattttgta |
2854269 |
T |
|
| Q |
301 |
ccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttggatgatgtccatctcatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |
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| T |
2854270 |
ccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaatt |
2854369 |
T |
|
| Q |
401 |
gaac |
404 |
Q |
| |
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|||| |
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|
| T |
2854370 |
gaac |
2854373 |
T |
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