View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15203_high_3 (Length: 369)
Name: NF15203_high_3
Description: NF15203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15203_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 34899748 - 34899398
Alignment:
| Q |
1 |
gacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaact |
100 |
Q |
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| T |
34899748 |
gacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaact |
34899650 |
T |
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| Q |
101 |
gacccactaattgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaa |
200 |
Q |
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| T |
34899649 |
gacccactagttgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaa |
34899550 |
T |
|
| Q |
201 |
gtcttagcagacacttcttcatagannnnnnnngttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaa |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899549 |
gtcttagcagacacttcttcatagattttttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaa |
34899450 |
T |
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| Q |
301 |
ggatccaaatagcaccacaagaaacaattagagaagtgtcaaaacaaaaggg |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899449 |
ggatccaaatagcaccacaagaaacaattagagaagtgtcaaaacaaaaggg |
34899398 |
T |
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