View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15203_low_1 (Length: 576)
Name: NF15203_low_1
Description: NF15203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15203_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 53615038 - 53615613
Alignment:
| Q |
1 |
tccccaacacgttccctcactcgatcgtacctcaggagccacgtaacacggggatccacactttgtgtttaggacatcattaggctgcaaatgtatcaaa |
100 |
Q |
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| T |
53615038 |
tccccaacacgttccctcactcgatcatacctcaggagccacgtaacacggggatccacactttgtgtttaggacattattaggctgcaaatttatcaaa |
53615137 |
T |
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| Q |
101 |
atttaatcgttaccaatcaaaaagtcttacaattgaactcgtgattagttcgaaacaaatttttaaccttattcagtgcacttaatccaaaatcagacac |
200 |
Q |
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| T |
53615138 |
atttaatcgttaccaatcaaaaagtcttacaattgaacttgtgattaggttgaaacaaattttttaccttattcagtgcacttaatccaaaatcagacac |
53615237 |
T |
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| Q |
201 |
ttttagatttcccttgctgtctaggagcaagttttctggctgtattgacacatgtaaaaggtgtaaggtttcaaatcttgtttttctaaacaaagaaaaa |
300 |
Q |
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| T |
53615238 |
ttttagatttcccttgctgtctaggagcaagttttctggctgtattgacacatgtaaaaggtgtaaggtttcaaaacttgtttttctaaacaaagaaaaa |
53615337 |
T |
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| Q |
301 |
tgcaggattggtttaacttaccttgagatcgcggtgataaactcccttgttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53615338 |
tgcaggattggtttaacttaccttgagatcgcggtgataaactcccttgttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcc |
53615437 |
T |
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| Q |
401 |
tcacattcattcaacttgttgcaataggactgcataaacaaaatttccagaattgaagtattataattgtaagtacacaacatttgaacaacaaagagat |
500 |
Q |
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| T |
53615438 |
tcacattcattcaacttgttgcaataggactgcataaacaaaattttcagaattgaagtattataattgtaagtacacaacatttgaacaacaaagagat |
53615537 |
T |
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| Q |
501 |
tgttgatatgattctcactattttgtccaatagttgacctcctgatacatattccatcacaatgtatatttttgtt |
576 |
Q |
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| T |
53615538 |
tgttgatatgattctcactattttgtccaatagttgacctcctgatacatattccatcacaatgtatatttttgtt |
53615613 |
T |
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