View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_high_14 (Length: 428)
Name: NF15204_high_14
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 7622983 - 7622575
Alignment:
| Q |
1 |
agcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622983 |
agcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
7622884 |
T |
|
| Q |
101 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7622883 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattgccaagagaaa |
7622784 |
T |
|
| Q |
201 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622783 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
7622684 |
T |
|
| Q |
301 |
ccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622683 |
ccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgt |
7622584 |
T |
|
| Q |
401 |
cctgcaatg |
409 |
Q |
| |
|
||||||||| |
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|
| T |
7622583 |
cctgcaatg |
7622575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 7627534 - 7627126
Alignment:
| Q |
1 |
agcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7627534 |
agcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
7627435 |
T |
|
| Q |
101 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7627434 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattgccaagagaaa |
7627335 |
T |
|
| Q |
201 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7627334 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
7627235 |
T |
|
| Q |
301 |
ccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7627234 |
ccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgt |
7627135 |
T |
|
| Q |
401 |
cctgcaatg |
409 |
Q |
| |
|
||||||||| |
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|
| T |
7627134 |
cctgcaatg |
7627126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 7634670 - 7634262
Alignment:
| Q |
1 |
agcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
7634670 |
agcaatagtggtttgggctatgacaacattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaatatttt |
7634571 |
T |
|
| Q |
101 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | |||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
7634570 |
ataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccattactagtaccaagagaaa |
7634471 |
T |
|
| Q |
201 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| || |
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|
| T |
7634470 |
caatagaaaattgtaacatagatggttatgagattaaaccaaaaactttagtgtatgttaatgcatgggccataggaagggatcctgagaattggaaaga |
7634371 |
T |
|
| Q |
301 |
ccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
7634370 |
ccctgaagagttttatcctgaaaggttcattatgagttcagtggactttaaagggaaaaattttgagctaattccatttggaagtggaagaagaatgtgt |
7634271 |
T |
|
| Q |
401 |
cctgcaatg |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
7634270 |
cctgcaatg |
7634262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 22941495 - 22941586
Alignment:
| Q |
311 |
ttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
402 |
Q |
| |
|
||||||||||||||||| ||| ||||| || |||| ||| || || ||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
22941495 |
ttttatcctgaaaggtttattgaaagttgtgtagattataagggaaataattttgagttcattccatttggtgctggaagaagaatgtgtcc |
22941586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 404
Target Start/End: Complemental strand, 22986410 - 22986263
Alignment:
| Q |
257 |
gttaatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaaggga |
356 |
Q |
| |
|
|||||||| |||||||| | | |||||||| | ||||||||||||| || ||||||||||||| ||||| ||| ||||| | ||||| ||||| | |
|
|
| T |
22986410 |
gttaatgcttgggccattggacgggatcctaaatattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaa |
22986311 |
T |
|
| Q |
357 |
agaattttgagttgattccatttggaagtggaagaagaatgtgtcctg |
404 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||| ||||||| |
|
|
| T |
22986310 |
ctaattttgagtacattccatttggtgctggaaggagaatttgtcctg |
22986263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 22916834 - 22916886
Alignment:
| Q |
350 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
402 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
22916834 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22916886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 22932253 - 22932201
Alignment:
| Q |
350 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
402 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
22932253 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22932201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 23610347 - 23610280
Alignment:
| Q |
260 |
aatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggtt |
327 |
Q |
| |
|
||||| ||||| |||| |||||||||| | ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
23610347 |
aatgcttgggcaataggaagggatcctaaatattggaatgacccagataagttttatcctgaaaggtt |
23610280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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