View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_high_15 (Length: 371)
Name: NF15204_high_15
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 13414024 - 13414369
Alignment:
| Q |
1 |
agtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatttgtatccagaa |
100 |
Q |
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| T |
13414024 |
agtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatttgtatccagaa |
13414123 |
T |
|
| Q |
101 |
acaagatctaaacatttaagggtgttcccattgaagtttggtttaattatgagac--aaaataattccatctaaatactattaaaatacttctagtttgg |
198 |
Q |
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| T |
13414124 |
acaagatctaaacatttaagggtgttcccattgaagtttggtttaattatgagacaaaaaataattcaatctaaatactattaaaatacttctagtttgg |
13414223 |
T |
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| Q |
199 |
ttcattttggatgtctctttaaaagaatatgataatgtgggcttaatttcgatgtaatttcggttatctaaattacagttttaataaattattttaacat |
298 |
Q |
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| T |
13414224 |
ttcattctcgatgtctctttaaaagaatatgataatgtgggcttaatttagatgtaatttcggttatctaaattacagttttaaaaaatta--------- |
13414314 |
T |
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| Q |
299 |
ttatattacaaaactaacagattttaattacggacatcgagatgttagaaggtcct |
354 |
Q |
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| T |
13414315 |
-tatattacaaaactaacagattttaattacggacatcgagatgttagaaggtcct |
13414369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 13426985 - 13427072
Alignment:
| Q |
2 |
gtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt |
89 |
Q |
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| T |
13426985 |
gtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttccctaaagttttgatgcatcaaagttaaattaatt |
13427072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13447599 - 13447656
Alignment:
| Q |
1 |
agtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccct |
58 |
Q |
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| T |
13447599 |
agtgacatatcccacaatataacaccttgaatgctacatctttctcacccgtttccct |
13447656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 13420052 - 13420135
Alignment:
| Q |
6 |
catatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt |
89 |
Q |
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| T |
13420052 |
catataccacaatacatcaccttgaacgctacatctttctcaccagtttccctaaagttttgatgcatcaagattgaattaatt |
13420135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13388836 - 13388782
Alignment:
| Q |
1 |
agtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttc |
55 |
Q |
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|||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
13388836 |
agtgacatatcccacaatacaatattttgaatgccacatctttttcaccagtttc |
13388782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 13409303 - 13409248
Alignment:
| Q |
6 |
catatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaa |
61 |
Q |
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||||| || ||||||||||| |||||||| |||||||| ||||| ||||||||||| |
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| T |
13409303 |
catattccgcaatacaacactttgaatgccacatctttctcacctgtttccctaaa |
13409248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13393212 - 13393158
Alignment:
| Q |
1 |
agtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttc |
55 |
Q |
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| T |
13393212 |
agtgacatatcccacaatacagtactttaaatgccacatctttttcacccgtttc |
13393158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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