View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15204_high_16 (Length: 353)

Name: NF15204_high_16
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15204_high_16
NF15204_high_16
[»] chr8 (7 HSPs)
chr8 (1-334)||(4962106-4962446)
chr8 (42-261)||(12195535-12195754)
chr8 (42-261)||(12439963-12440182)
chr8 (1-261)||(12200553-12200813)
chr8 (1-261)||(12444981-12445241)
chr8 (56-255)||(15349100-15349299)
chr8 (62-113)||(4031577-4031628)
[»] chr4 (33 HSPs)
chr4 (56-274)||(48147358-48147576)
chr4 (56-323)||(37826635-37826908)
chr4 (56-176)||(7790376-7790496)
chr4 (60-261)||(7765850-7766054)
chr4 (41-170)||(48156059-48156188)
chr4 (67-258)||(7773481-7773675)
chr4 (58-173)||(45365867-45365982)
chr4 (41-112)||(48864395-48864466)
chr4 (56-113)||(49043813-49043870)
chr4 (56-168)||(7237388-7237500)
chr4 (56-176)||(7771691-7771811)
chr4 (56-112)||(49038523-49038579)
chr4 (56-261)||(7786672-7786880)
chr4 (59-113)||(45371722-45371776)
chr4 (136-245)||(7877970-7878082)
chr4 (56-113)||(48853040-48853097)
chr4 (56-173)||(48870859-48870976)
chr4 (56-173)||(48876163-48876280)
chr4 (56-173)||(48886545-48886662)
chr4 (58-113)||(45384539-45384594)
chr4 (147-241)||(43596161-43596255)
chr4 (56-113)||(7878742-7878799)
chr4 (63-111)||(48903316-48903364)
chr4 (224-272)||(49044002-49044050)
chr4 (56-111)||(7813838-7813893)
chr4 (56-111)||(7908663-7908718)
chr4 (59-113)||(49048203-49048257)
chr4 (62-110)||(50672860-50672908)
chr4 (56-111)||(7800998-7801053)
chr4 (56-111)||(50666676-50666731)
chr4 (227-305)||(48705198-48705276)
chr4 (141-253)||(50669301-50669416)
chr4 (63-111)||(48861649-48861697)
[»] chr3 (4 HSPs)
chr3 (68-273)||(11015148-11015347)
chr3 (56-273)||(11005573-11005784)
chr3 (56-274)||(11024148-11024360)
chr3 (41-278)||(47451530-47451767)
[»] chr5 (5 HSPs)
chr5 (67-168)||(9120067-9120168)
chr5 (68-263)||(179267-179462)
chr5 (56-112)||(42561978-42562034)
chr5 (57-122)||(29688479-29688544)
chr5 (224-278)||(29696427-29696481)
[»] chr6 (3 HSPs)
chr6 (56-113)||(21016180-21016237)
chr6 (204-257)||(21979424-21979477)
chr6 (65-105)||(14197337-14197377)
[»] chr7 (1 HSPs)
chr7 (56-113)||(48884183-48884240)
[»] chr1 (3 HSPs)
chr1 (56-116)||(24416134-24416194)
chr1 (56-106)||(24367531-24367581)
chr1 (56-113)||(24310575-24310632)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 4962106 - 4962446
Alignment:
Q  1 tttttgtatagtatattggggaaaagcaaaaaatgttacgatcaataggaattagaagagtcttagtccaagacga---atgcagtttgtattccttcat 97  Q
    |||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||| |||||    
T  4962106 tttttgtagaatatattggggaaaagaaacaaatgttacgatcaataggaattagaagagtcttagtccacgacgacgaatgcagtttgtattctttcat 4962205  T
Q  98 cacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattctccaaatacccacaaaccataatttacag----gatcatagtc 193  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    | ||||||||    
T  4962206 cacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaaccataacttacagacaggttcatagtc 4962305  T
Q  194 aaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataacatccattgataaatcattacgacgagcaacccaatga 293  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  4962306 aaaatcattgggaagaggcatctctaacaatttcctttccattaaatcaaagacaataataacatccactgataaatcattacgacgagcaacccaatga 4962405  T
Q  294 aaggccccattaaagaatgaccttactttgacaataggagc 334  Q
    |||||| | ||||||||| ||| ||||||||||||||||||    
T  4962406 aaggcctcgttaaagaataaccctactttgacaataggagc 4962446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 42 - 261
Target Start/End: Complemental strand, 12195754 - 12195535
Alignment:
Q  42 tcaataggaattagaagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccata 141  Q
    ||||||||||||| |||||||||||||||||| || ||  |||||||||| |||||| |||||||||||||| | | ||||  ||||| |||   |||||    
T  12195754 tcaataggaattacaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccata 12195655  T
Q  142 gacggagaaattctccaaatacccacaaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatc 241  Q
    ||| |||||||| |||||||||||||||||||||||   | ||| ||| |||  ||||||  |||||||| |||||||||||||||||||| ||||||||    
T  12195654 gactgagaaattttccaaatacccacaaaccataatgctctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatc 12195555  T
Q  242 aaagacaacaataacatcca 261  Q
    ||||||||||||||| ||||    
T  12195554 aaagacaacaataacttcca 12195535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 42 - 261
Target Start/End: Complemental strand, 12440182 - 12439963
Alignment:
Q  42 tcaataggaattagaagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccata 141  Q
    ||||||||||||| |||||||||||||||||| || ||  |||||||||| |||||| |||||||||||||| | | ||||  ||||| |||   |||||    
T  12440182 tcaataggaattacaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccata 12440083  T
Q  142 gacggagaaattctccaaatacccacaaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatc 241  Q
    ||| |||||||| |||||||||||||||||||||||   | ||| ||| |||  ||||||  |||||||| |||||||||||||||||||| ||||||||    
T  12440082 gactgagaaattttccaaatacccacaaaccataatgctctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatc 12439983  T
Q  242 aaagacaacaataacatcca 261  Q
    ||||||||||||||| ||||    
T  12439982 aaagacaacaataacttcca 12439963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 12200813 - 12200553
Alignment:
Q  1 tttttgtatagtatattggggaaaagcaaaaaatgttacgatcaataggaattagaagagtcttagtccaagacgaatgcagtttgtattccttcatcac 100  Q
    |||||||| ||||||| ||||||||||||   |||| |    |||||||||||| ||||||||| |||||||||||| |||||||||||   |||||| |    
T  12200813 tttttgtagagtatataggggaaaagcaatgcatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtatattttcatcgc 12200714  T
Q  101 ccatatttcaactctactattacgaaaatccatgccccatagacggagaaattctccaaatacccacaaaccataatttacaggatcatagtcaaaatca 200  Q
    |||||||||||   |   ||||  ||||| |||   ||||||||  |||||||||||||||||||||||||||||||  | | || ||| ||  ||||||    
T  12200713 ccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatca 12200614  T
Q  201 tggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataacatcca 261  Q
    |  |||||| | ||||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  12200613 tctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaataacttcca 12200553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 12445241 - 12444981
Alignment:
Q  1 tttttgtatagtatattggggaaaagcaaaaaatgttacgatcaataggaattagaagagtcttagtccaagacgaatgcagtttgtattccttcatcac 100  Q
    |||||||| ||||||| ||||||||||||   |||| |    |||||||||||| ||||||||| |||||||||||| |||||||||||   |||||| |    
T  12445241 tttttgtagagtatataggggaaaagcaatgcatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtatattttcatcgc 12445142  T
Q  101 ccatatttcaactctactattacgaaaatccatgccccatagacggagaaattctccaaatacccacaaaccataatttacaggatcatagtcaaaatca 200  Q
    |||||||||||   |   ||||  ||||| |||   ||||||||  |||||||||||||||||||||||||||||||  | | || ||| ||  ||||||    
T  12445141 ccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatca 12445042  T
Q  201 tggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataacatcca 261  Q
    |  |||||| | ||||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  12445041 tctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaataacttcca 12444981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 15349299 - 15349100
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    |||| |||| |||||||| || | || ||||||||| |||||||||||||||||||  |||  |||| || ||||| |   ||| ||||  | ||||||     
T  15349299 aagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaaaaattcg 15349200  T
Q  156 ccaaatacccacaaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataa 255  Q
    ||||| |||||||||||| |||   ||| |||||  ||||||||||  ||| |||||||||| |||| |||||||||  ||||||||||  |||||||||    
T  15349199 ccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggaggaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataa 15349100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 4031577 - 4031628
Alignment:
Q  62 cttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  4031577 cttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 4031628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 56 - 274
Target Start/End: Original strand, 48147358 - 48147576
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||   |  |||||| |||  ||||| |||||||| |    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcatgatccatacccgttagactgagaaattgt 48147457  T
Q  156 ccaaatacccacaaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataa 255  Q
    |||||||||||||||  |  || | |||  |||  | ||||| |||  |||| |||||||||||| | | ||||||| |||||||||||  ||| |||||    
T  48147458 ccaaatacccacaaatgactatattcagattcaaggccaaaaccatctggaaaaggcatctctaaaagtctcctttccattaaatcaaatgcaataataa 48147557  T
Q  256 catccattgataaatcatt 274  Q
    ||||| ||| |||||||||    
T  48147558 catcccttgctaaatcatt 48147576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 323
Target Start/End: Original strand, 37826635 - 37826908
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || || || | ||  ||||  |    ||||| |||||||||  |||||||||    
T  37826635 aagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaattct 37826734  T
Q  156 ccaaatacccacaaaccataatttacaggatcatagtcaaaatca--tgg----ggaagaggcatctctaacaatttcctttctattaaatcaaagacaa 249  Q
    |||||||||||||||||| ||| |  |||||||| || |||||||  |||    ||||  || |||||||||| ||||||||| ||||||| |||| |||    
T  37826735 ccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaactggaacgggtatctctaacagtttcctttccattaaattaaaggcaa 37826834  T
Q  250 caataacatccattgataaatcattacgacgagcaacccaatgaaaggccccattaaagaatgaccttactttg 323  Q
    |||||| || || || | |||||  ||||  ||  | |||||||| ||||||||| |||| ||||| |||||||    
T  37826835 caataagatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatttaagagtgaccctactttg 37826908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 7790496 - 7790376
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||  ||||  | ||||| |  | |||| || ||||||||||    
T  7790496 aagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactgagaaattct 7790397  T
Q  156 ccaaatacccacaaaccataa 176  Q
    |||||||||||||||| ||||    
T  7790396 ccaaatacccacaaactataa 7790376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 261
Target Start/End: Complemental strand, 7766054 - 7765850
Alignment:
Q  60 gtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattctccaa 159  Q
    ||||||||||| ||||||| || ||||||||| ||||||||||||||||||| | ||  ||||  |  |||| |  |||||| || |||||||||||||     
T  7766054 gtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattctccag 7765955  T
Q  160 atacccacaaaccataatttac--aggat-catagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataac 256  Q
    |||||||||||||| ||| |||  | | |   | ||||| |||||  |||||||||||||| |||||| |||||||  ||||||||||| ||||||| ||    
T  7765954 atacccacaaaccagaatgtaccaatgctgtgtggtcaacatcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatgac 7765855  T
Q  257 atcca 261  Q
    |||||    
T  7765854 atcca 7765850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 48156059 - 48156188
Alignment:
Q  41 atcaataggaattagaagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccat 140  Q
    |||||||||||  | |||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||   ||||    |||| |   |||||    
T  48156059 atcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaacagcccat 48156158  T
Q  141 agacggagaaattctccaaatacccacaaa 170  Q
    | || |||||||||||||||||||||||||    
T  48156159 aaactgagaaattctccaaatacccacaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 258
Target Start/End: Original strand, 7773481 - 7773675
Alignment:
Q  67 tccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattctccaaataccca 166  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||| ||  ||||  |  |||| |  |||||| ||  ||| ||||||||||||||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccca 7773580  T
Q  167 caaaccataatttac---aggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataacat 258  Q
    ||||||| ||| |||    | |  || || || || ||  |||||||||||||| |||||||||||||| ||||||||||||  |||||| ||||    
T  7773581 caaaccagaatgtaccaatgcactatggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaattacat 7773675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 45365867 - 45365982
Alignment:
Q  58 gagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattctcc 157  Q
    ||||||| |||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||  ||||  | |||||||  |||| | || || |||||||||    
T  45365867 gagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctcc 45365966  T
Q  158 aaatacccacaaacca 173  Q
    ||||||||||||||||    
T  45365967 aaatacccacaaacca 45365982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 48864466 - 48864395
Alignment:
Q  41 atcaataggaattagaagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaac 112  Q
    |||||||||||  | |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 49043813 - 49043870
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  49043813 aagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaact 49043870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 7237388 - 7237500
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    |||||| ||||||||| ||||||||| ||||||||| ||||||||||||||| ||| | ||  ||||  | |||||    ||||||||| ||||||||||    
T  7237388 aagagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattct 7237487  T
Q  156 ccaaatacccaca 168  Q
    |||||||||||||    
T  7237488 ccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 7771811 - 7771691
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    |||||| |||||||| |||||||||| ||||||||| ||||||||||||||| ||| | ||  ||||  | ||||| |  | |||| || ||||||||||    
T  7771811 aagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaattct 7771712  T
Q  156 ccaaatacccacaaaccataa 176  Q
    |||||||||||||||| ||||    
T  7771711 ccaaatacccacaaactataa 7771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 49038523 - 49038579
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaac 112  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  49038523 aagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 261
Target Start/End: Complemental strand, 7786880 - 7786672
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    |||||||||| |||||||  ||||||  |||||||| ||||||||||||||||||| | ||  ||||  |  |||| |  |||||| || |||||||||     
T  7786880 aagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattcc 7786781  T
Q  156 ccaaatacccacaaaccataatttacaggatca---tagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaa 252  Q
    ||| |||||||||||||| ||| |||    ||    | ||||| |||||  |||||||||||||| |||||| |||||||  ||||||||||| ||||||    
T  7786780 ccagatacccacaaaccagaatgtaccaactctgtgtggtcaacatcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaa 7786681  T
Q  253 taacatcca 261  Q
    | |||||||    
T  7786680 tgacatcca 7786672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 45371722 - 45371776
Alignment:
Q  59 agtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  45371722 agtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaact 45371776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 7878082 - 7877970
Alignment:
Q  136 cccatagacggagaaattctccaaatacccacaaaccataatttac--aggatc-atagtcaaaatcatggggaagaggcatctctaacaatttcctttc 232  Q
    ||||||||| |||||||||||||||||||||||||||| ||| |||  | | || || ||||| || ||  |||||||||||||| ||||||||| ||||    
T  7878082 cccatagactgagaaattctccaaatacccacaaaccagaatgtactaatgctctatggtcaacattatttggaagaggcatctcaaacaatttcttttc 7877983  T
Q  233 tattaaatcaaag 245  Q
     ||||||||||||    
T  7877982 cattaaatcaaag 7877970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 48853097 - 48853040
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    |||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||    
T  48853097 aagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaact 48853040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 48870976 - 48870859
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    ||||||||| ||||||||||| | || ||||||||| ||||||||||| ||||||| | || ||| |  | |||||||  |  |||||| |||||||||     
T  48870976 aagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattcc 48870877  T
Q  156 ccaaatacccacaaacca 173  Q
    ||||||||||||||||||    
T  48870876 ccaaatacccacaaacca 48870859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 48876280 - 48876163
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    ||||||||| ||||||||||| | || ||||||||| ||||||||||| ||||||| | || ||| |  | |||||||  |  |||||| |||||||||     
T  48876280 aagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattcc 48876181  T
Q  156 ccaaatacccacaaacca 173  Q
    ||||||||||||||||||    
T  48876180 ccaaatacccacaaacca 48876163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 48886662 - 48886545
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    ||||||||| ||||||||||| | || ||||||||| ||||||||||| ||||||| | || ||| |  | |||||||  |  |||||| |||||||||     
T  48886662 aagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattcc 48886563  T
Q  156 ccaaatacccacaaacca 173  Q
    ||||||||||||||||||    
T  48886562 ccaaatacccacaaacca 48886545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 45384539 - 45384594
Alignment:
Q  58 gagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    ||||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  45384539 gagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaact 45384594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 43596161 - 43596255
Alignment:
Q  147 agaaattctccaaatacccacaaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatc 241  Q
    |||||||| ||||||||||||| | || |||||  |||||||||||||||| ||| ||||| | |||||||||| | ||| ||||| ||||||||    
T  43596161 agaaattccccaaatacccacatatcacaatttttaggatcatagtcaaaaccatcgggaaaaagcatctctaagagtttgctttcaattaaatc 43596255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 7878799 - 7878742
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    |||||| ||| ||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  7878799 aagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaact 7878742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 48903364 - 48903316
Alignment:
Q  63 ttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaa 111  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  48903364 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 49044002 - 49044050
Alignment:
Q  224 tttcctttctattaaatcaaagacaacaataacatccattgataaatca 272  Q
    ||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  49044002 tttcctttcaattaaatcaaaggcaacaataacattcattgataaatca 49044050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 7813893 - 7813838
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaa 111  Q
    |||||| ||| ||||||||||||||| ||||||||| |||| ||||||||||||||    
T  7813893 aagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 7908718 - 7908663
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaa 111  Q
    |||||| ||| ||||||| ||||||| ||||||||| |||||||||||||||||||    
T  7908718 aagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 49048203 - 49048257
Alignment:
Q  59 agtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    |||||||||||| |||||||||| ||| || || |||||||||||||||||||||    
T  49048203 agtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaact 49048257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 50672908 - 50672860
Alignment:
Q  62 cttagtccaagacgaatgcagtttgtattccttcatcacccatatttca 110  Q
    ||||||||| |||||||||| ||||||||  ||||||||||||||||||    
T  50672908 cttagtccacgacgaatgcaatttgtattgtttcatcacccatatttca 50672860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 7801053 - 7800998
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaa 111  Q
    |||||| ||| ||||||||||||||| |||||| || |||| ||||||||||||||    
T  7801053 aagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 50666731 - 50666676
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaa 111  Q
    |||||| ||||||||||| ||||||| ||||||||| | ||||||||||| |||||    
T  50666731 aagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaa 50666676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 48705198 - 48705276
Alignment:
Q  227 cctttctattaaatcaaagacaacaataacatccattgataaatcattacgacgagcaacccaatgaaaggccccatta 305  Q
    |||||| |||||||||||| |||||||||||||| ||  |||||||| ||||  ||| | ||||||||  |||||||||    
T  48705198 cctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagccccatta 48705276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 253
Target Start/End: Complemental strand, 50669416 - 50669301
Alignment:
Q  141 agacggagaaattctccaaatacccacaaaccataatttacaggatcatagtcaaaatcatggggaag---aggcatctctaacaatttcctttctatta 237  Q
    |||| |||||||||||||||||||||||||||| ||| |  ||  | || |  ||||||||  |||||   |||||| ||||||| ||||||||| || |    
T  50669416 agactgagaaattctccaaatacccacaaaccacaatctgaagtttgatggataaaatcatccggaagagtaggcatgtctaacagtttcctttccatca 50669317  T
Q  238 aatcaaagacaacaat 253  Q
    |||||||| |||||||    
T  50669316 aatcaaaggcaacaat 50669301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 48861697 - 48861649
Alignment:
Q  63 ttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaa 111  Q
    |||||||||||| |||||| ||||||||| || || |||||||||||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaa 48861649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 273
Target Start/End: Original strand, 11015148 - 11015347
Alignment:
Q  68 ccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattctccaaatacccac 167  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||| | | ||        |||||  |||||||||  |||||||||||||||| ||||    
T  11015148 ccaagacgaatgcactttgtattctttcataacccatatttcaactgttccatcc------tccatagcccatagacttagaaattctccaaatatccac 11015241  T
Q  168 aaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataacatccattgata 267  Q
    ||| || ||| || ||| |||||||||||| |||  |||| | ||||||| || | ||||||||| | |||||||||| |||||||||||||||||||||    
T  11015242 aaatcacaatctataggttcatagtcaaaaccatctggaaaatgcatctccaaaagtttcctttccactaaatcaaagccaacaataacatccattgata 11015341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 273
Target Start/End: Original strand, 11005573 - 11005784
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    ||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||| | |   ||  |      ||||  |||||||||  |||||||||    
T  11005573 aagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatccc------ccatagcccatagactaagaaattct 11005666  T
Q  156 ccaaatacccacaaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataa 255  Q
    ||||||| ||||||| || ||| || ||| ||||  |||||| |||  |||| |||||||||||| | ||||||||| | |||||||||| |||||||||    
T  11005667 ccaaatatccacaaatcacaatctataggttcatgatcaaaaccatatggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataa 11005766  T
Q  256 catccattgataaatcat 273  Q
    |||||||||| |||||||    
T  11005767 catccattgacaaatcat 11005784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 274
Target Start/End: Original strand, 11024148 - 11024360
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattct 155  Q
    |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| | |     ||| |    ||||  ||||||||| ||||||||||    
T  11024148 aagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt-----tac-accccccatagcccatagactgagaaattct 11024241  T
Q  156 ccaaatacccacaaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataa 255  Q
    ||||||| ||||||| || |||  | ||| ||||  |||||| |||  |||| ||||||||| || | || |||||| | |||||||||| ||| |||||    
T  11024242 ccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttccactaaatcaaaggcaataataa 11024341  T
Q  256 catccattgataaatcatt 274  Q
    |||||||||||||||||||    
T  11024342 catccattgataaatcatt 11024360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 47451530 - 47451767
Alignment:
Q  41 atcaataggaattagaagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccat 140  Q
    |||||||||||  | |||||||||   |||||||||||  | ||||||||| ||||||||||||||||||||| ||  |||| || ||||||   ||| |    
T  47451530 atcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaaccctt 47451629  T
Q  141 agacggagaaattctccaaatacccacaaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaat 240  Q
    ||||  ||||||||||||||||||||||||||| ||||   ||| |||| |||||||||||  || | |  ||  ||||| ||||| ||||| |||||||    
T  47451630 agactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaat 47451729  T
Q  241 caaagacaacaataacatccattgataaatcattacga 278  Q
    ||||  || ||||||||| ||| |||| ||||| ||||    
T  47451730 caaatgcagcaataacattcatggatatatcatgacga 47451767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 9120168 - 9120067
Alignment:
Q  67 tccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattctccaaataccca 166  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||| ||  ||||  |||||||||  |||||| || |||||||||||||||||||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaataccca 9120069  T
Q  167 ca 168  Q
    ||    
T  9120068 ca 9120067  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 263
Target Start/End: Complemental strand, 179462 - 179267
Alignment:
Q  68 ccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactattacgaaaatccatgccccatagacggagaaattctccaaatacccac 167  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||| ||  ||||  | |||||||  |||||| || |||||||| ||||||||||||     
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaatacccat 179363  T
Q  168 aaaccataatttacaggatcatagtcaaaatcatggggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataacatccatt 263  Q
    | | || |||||  ||  |||||||||| ||||   || ||||| ||||| || | || |||||  |||| ||||||| ||| ||||| |||||||    
T  179362 acatcacaatttgtagcttcatagtcaatatcaattgggagaggaatctcaaaaagttcccttttgattagatcaaaggcaagaataagatccatt 179267  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 42561978 - 42562034
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaac 112  Q
    |||| ||||||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  42561978 aagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 42562034  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 29688544 - 29688479
Alignment:
Q  57 agagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactctactatta 122  Q
    |||||||| ||||||||||| ||||  |||||||  ||||||||||||||||||||| ||| ||||    
T  29688544 agagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgtaccatta 29688479  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 29696481 - 29696427
Alignment:
Q  224 tttcctttctattaaatcaaagacaacaataacatccattgataaatcattacga 278  Q
    ||||||||| ||||||| |||| |||||||||||  |||||||| ||||||||||    
T  29696481 tttcctttcaattaaatgaaaggcaacaataacaggcattgatatatcattacga 29696427  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 21016237 - 21016180
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    |||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaact 21016180  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 21979424 - 21979477
Alignment:
Q  204 ggaagaggcatctctaacaatttcctttctattaaatcaaagacaacaataaca 257  Q
    |||||||| ||||| || | |||||||||||||||||||||| |||||||||||    
T  21979424 ggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaataaca 21979477  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  65 agtccaagacgaatgcagtttgtattccttcatcacccata 105  Q
    ||||||||| ||||||| ||||||||| |||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 48884240 - 48884183
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    |||||||||||||||||||  ||||| ||||||||| ||||||||| |||||||||||    
T  48884240 aagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaact 48884183  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 24416194 - 24416134
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaactcta 116  Q
    |||||| ||||||||||| || |||  ||||||||| |||||||||||||| |||||||||    
T  24416194 aagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactcta 24416134  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 24367581 - 24367531
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatat 106  Q
    |||||| ||||||||||||||||||| ||||||||| | ||| ||||||||    
T  24367581 aagagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 24310632 - 24310575
Alignment:
Q  56 aagagtcttagtccaagacgaatgcagtttgtattccttcatcacccatatttcaact 113  Q
    |||||| ||| ||||||| || |||| ||||||||| |||||||||||||| ||||||    
T  24310632 aagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaact 24310575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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