View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_high_24 (Length: 278)
Name: NF15204_high_24
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_high_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 40073301 - 40073024
Alignment:
| Q |
1 |
gttaccacctgaagaggaggatgtcgttgaagaagatgaagtttcgattactgttaggaagttcaggtggctctctcaacggcttgaggcgttgagatct |
100 |
Q |
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| T |
40073301 |
gttaccacctgaagaggaggatgtcgttcaagaagatgaagtttcgattactgttaggaagttcaggtggctctctcaacggcttgaggcgttgagatct |
40073202 |
T |
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| Q |
101 |
aaaccaggaggtggtgaatcggcgaaagaatcggagaaattgtcagttgaggaggagaaattggagatgatttgtcctgtttgtaaagatttcaacgctg |
200 |
Q |
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| T |
40073201 |
aaaccaggaggtggtgaatcggcgaaagaatcggagaaattgtcaattgaggaggagaaattggagatgatttgtcctgtttgtaaagatttcaacgctg |
40073102 |
T |
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| Q |
201 |
ctactgtgacggcggtgaacgctcatattgatagttgtttagggaaggctgttagagatgaacggcgtcagtcggcga |
278 |
Q |
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| T |
40073101 |
ctactgtgacggcggtgaacgctcatattgatagttgtttagggaaggctgttagagatgaacggcgtcagacggcga |
40073024 |
T |
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