View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15204_high_28 (Length: 252)

Name: NF15204_high_28
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15204_high_28
NF15204_high_28
[»] chr7 (19 HSPs)
chr7 (1-212)||(38411619-38411829)
chr7 (46-132)||(7367959-7368045)
chr7 (164-232)||(27967366-27967434)
chr7 (164-232)||(27976819-27976887)
chr7 (158-212)||(17515790-17515844)
chr7 (158-212)||(17537370-17537424)
chr7 (158-212)||(559883-559937)
chr7 (158-212)||(569792-569846)
chr7 (164-211)||(5200600-5200647)
chr7 (164-211)||(5209729-5209776)
chr7 (153-211)||(4185168-4185226)
chr7 (160-210)||(15974735-15974785)
chr7 (158-212)||(16911193-16911247)
chr7 (157-205)||(16474424-16474472)
chr7 (158-210)||(16544206-16544258)
chr7 (158-210)||(16621404-16621456)
chr7 (168-212)||(1887939-1887982)
chr7 (168-212)||(1902040-1902083)
chr7 (168-212)||(24187138-24187181)
[»] chr5 (12 HSPs)
chr5 (43-210)||(29185268-29185435)
chr5 (159-214)||(31549531-31549586)
chr5 (169-212)||(23568473-23568516)
chr5 (169-212)||(31411814-31411857)
chr5 (169-212)||(31422722-31422765)
chr5 (169-209)||(29189254-29189294)
chr5 (160-210)||(2826865-2826915)
chr5 (172-212)||(8949134-8949174)
chr5 (153-212)||(8656204-8656263)
chr5 (153-212)||(8671178-8671237)
chr5 (168-210)||(20371908-20371949)
chr5 (168-210)||(20397632-20397673)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-209)||(24331-24536)
[»] chr3 (22 HSPs)
chr3 (43-137)||(50825230-50825324)
chr3 (43-137)||(50850536-50850630)
chr3 (164-232)||(1005727-1005795)
chr3 (153-234)||(2216539-2216620)
chr3 (153-232)||(11262267-11262347)
chr3 (153-212)||(16289537-16289596)
chr3 (158-212)||(4504930-4504984)
chr3 (153-212)||(4444339-4444398)
chr3 (169-210)||(52987458-52987499)
chr3 (168-212)||(1775839-1775883)
chr3 (168-212)||(4887692-4887736)
chr3 (168-212)||(5517767-5517811)
chr3 (160-207)||(13603387-13603435)
chr3 (164-210)||(9184899-9184944)
chr3 (168-210)||(18954624-18954665)
chr3 (159-212)||(20053168-20053222)
chr3 (159-212)||(20075828-20075882)
chr3 (168-212)||(27551888-27551931)
chr3 (168-212)||(28469261-28469304)
chr3 (160-207)||(31852325-31852372)
chr3 (178-212)||(23755544-23755578)
chr3 (160-210)||(50754220-50754270)
[»] chr6 (21 HSPs)
chr6 (43-132)||(33298965-33299054)
chr6 (158-232)||(27048655-27048729)
chr6 (158-232)||(27058899-27058973)
chr6 (153-232)||(3042385-3042464)
chr6 (153-234)||(16587793-16587874)
chr6 (153-234)||(16607506-16607587)
chr6 (164-212)||(30996949-30996997)
chr6 (154-221)||(15390672-15390739)
chr6 (153-214)||(5488164-5488225)
chr6 (153-214)||(24919161-24919222)
chr6 (153-212)||(24296429-24296488)
chr6 (153-212)||(24310460-24310519)
chr6 (153-215)||(20216009-20216071)
chr6 (153-215)||(22110030-22110092)
chr6 (169-212)||(5995692-5995735)
chr6 (171-210)||(1141767-1141806)
chr6 (153-212)||(17092468-17092527)
chr6 (168-212)||(19827583-19827626)
chr6 (160-210)||(877419-877469)
chr6 (153-211)||(13289784-13289842)
chr6 (153-211)||(13304751-13304809)
[»] chr1 (9 HSPs)
chr1 (169-234)||(13463836-13463901)
chr1 (159-212)||(18750196-18750249)
chr1 (153-211)||(18597081-18597139)
chr1 (160-207)||(179827-179874)
chr1 (171-210)||(3650803-3650842)
chr1 (169-210)||(8402117-8402158)
chr1 (158-195)||(20500898-20500935)
chr1 (178-212)||(35197953-35197987)
chr1 (160-204)||(22348261-22348305)
[»] scaffold1120 (1 HSPs)
scaffold1120 (158-212)||(385-439)
[»] chr2 (25 HSPs)
chr2 (158-212)||(17686378-17686432)
chr2 (164-218)||(25262588-25262642)
chr2 (159-212)||(21851538-21851591)
chr2 (159-212)||(21859973-21860026)
chr2 (164-211)||(33308186-33308233)
chr2 (153-212)||(34543046-34543105)
chr2 (153-211)||(27425289-27425347)
chr2 (153-211)||(27440335-27440393)
chr2 (153-210)||(39756282-39756339)
chr2 (153-212)||(21150010-21150069)
chr2 (153-210)||(21322005-21322062)
chr2 (169-214)||(22186090-22186135)
chr2 (153-212)||(34529072-34529132)
chr2 (169-212)||(20622458-20622501)
chr2 (161-212)||(28479928-28479979)
chr2 (164-211)||(44373736-44373782)
chr2 (164-211)||(44389647-44389693)
chr2 (163-209)||(27605541-27605587)
chr2 (169-205)||(25193113-25193149)
chr2 (168-212)||(26718656-26718699)
chr2 (168-212)||(26732844-26732887)
chr2 (177-212)||(4281573-4281608)
chr2 (153-212)||(11625983-11626042)
chr2 (172-206)||(25995531-25995565)
chr2 (168-210)||(35038869-35038910)
[»] scaffold0609 (1 HSPs)
scaffold0609 (153-212)||(2503-2562)
[»] scaffold0206 (1 HSPs)
scaffold0206 (153-216)||(19500-19563)
[»] chr8 (10 HSPs)
chr8 (153-212)||(4838716-4838775)
chr8 (153-204)||(23091546-23091597)
chr8 (169-212)||(26872660-26872703)
chr8 (169-210)||(36577971-36578012)
chr8 (169-212)||(26875118-26875161)
chr8 (160-210)||(4836500-4836550)
chr8 (160-210)||(4841945-4841995)
chr8 (164-212)||(17663632-17663679)
chr8 (164-212)||(17682788-17682835)
chr8 (160-210)||(2750241-2750291)
[»] chr4 (17 HSPs)
chr4 (153-214)||(20866839-20866900)
chr4 (164-212)||(4749045-4749093)
chr4 (169-212)||(12997535-12997578)
chr4 (153-212)||(17141856-17141915)
chr4 (153-212)||(24923275-24923334)
chr4 (153-212)||(32215913-32215972)
chr4 (160-214)||(772277-772331)
chr4 (153-214)||(52296722-52296783)
chr4 (156-232)||(17008284-17008361)
chr4 (156-232)||(17022248-17022325)
chr4 (168-212)||(5405294-5405338)
chr4 (160-202)||(638076-638118)
chr4 (168-212)||(21531356-21531399)
chr4 (180-212)||(48077653-48077685)
chr4 (153-212)||(40096350-40096409)
chr4 (153-212)||(40111361-40111420)
chr4 (160-210)||(26447211-26447261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (158-212)||(64671-64725)
[»] scaffold1896 (1 HSPs)
scaffold1896 (169-212)||(441-484)
[»] scaffold0853 (1 HSPs)
scaffold0853 (153-214)||(4255-4316)
[»] scaffold2141 (1 HSPs)
scaffold2141 (171-210)||(158-197)
[»] scaffold0669 (1 HSPs)
scaffold0669 (169-208)||(6035-6074)
[»] scaffold0497 (1 HSPs)
scaffold0497 (164-210)||(11845-11890)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 38411619 - 38411829
Alignment:
Q  1 gctcagatccgcttcaaaaggtaaaaagaggtaacnnnnnnnttcgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttg 100  Q
    |||||||||| |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38411619 gctcagatcctcttcaaaaggtaaaaagaggtaa-aaaaaaattcgtttctatttgtgtagatctaggacgattcaagctggttttcaaaattctgtttg 38411717  T
Q  101 tggatttgaacttaggaagaaaaaggatatctgaaaacgcgttttatcttgtaatcggaggagtttgaaactccggcgcggtggtgccaccaccggccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38411718 tggatttgaacttaggaagaaaaaggatatctgaaaacgcgttttattttataatcggagaagtttgaaactccggcgcggtggtgccaccaccggccac 38411817  T
Q  201 cgcgccggaaaa 212  Q
    ||||||||||||    
T  38411818 cgcgccggaaaa 38411829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 7367959 - 7368045
Alignment:
Q  46 gtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatct 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7367959 gtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatct 7368045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 27967434 - 27967366
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaaga 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  27967434 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 27967366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 27976887 - 27976819
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaaga 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  27976887 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 27976819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 17515844 - 17515790
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17515844 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 17515790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 17537370 - 17537424
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17537370 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 17537424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 559937 - 559883
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  559937 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgctggaaaa 559883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 569846 - 569792
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  569846 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgctggaaaa 569792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 5200647 - 5200600
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5200647 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 5200600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 5209776 - 5209729
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5209776 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 5209729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 4185168 - 4185226
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  4185168 aatcggaggagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 4185226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 15974735 - 15974785
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  15974735 ggagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 15974785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 16911247 - 16911193
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  16911247 gaggagtttgaaattccagcgtggtggtgccaccaccggccaccgcgccggaaaa 16911193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 16474472 - 16474424
Alignment:
Q  157 ggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgc 205  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  16474472 ggaggagtttaaaactccggcgcggtggtgccaccatcggccaccgcgc 16474424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 16544206 - 16544258
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  16544206 gaggagtttgaaattccggtgcggtggtgccaccaccggccaccgcgctggaa 16544258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 16621456 - 16621404
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  16621456 gaggagtttgaaattccggtgcggtggtgccaccaccggccaccgcgctggaa 16621404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 1887982 - 1887939
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  1887982 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 1887939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 1902083 - 1902040
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  1902083 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 1902040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 24187181 - 24187138
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  24187181 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 24187138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 29185435 - 29185268
Alignment:
Q  43 ttcgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatctgaaaacgcgt 142  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  29185435 ttcgtttctatttttgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatctggaaacgtgt 29185336  T
Q  143 tttatcttgtaatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29185335 tttattttgaaatcggaggagtttgaaactccggcacggtggtgccaccaccggccaccgcgccggaa 29185268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 31549586 - 31549531
Alignment:
Q  159 aggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 214  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31549586 aggagtttaaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 31549531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 23568473 - 23568516
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  23568473 aactccggcgcggtgatgccaccaccggccaccgcgccggaaaa 23568516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 31411814 - 31411857
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  31411814 aactccggtgcggtggtgccaccaccggccaccgcgccggaaaa 31411857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 31422722 - 31422765
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  31422722 aactccggcgcagtggtgccaccaccggccaccgcgccggaaaa 31422765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 29189254 - 29189294
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccgga 209  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  29189254 aactcaggcgcggtggtgccaccaccggccaccgcgccgga 29189294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 2826865 - 2826915
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||  |||||||||||||||||||||||||||||||| ||| |||||    
T  2826865 ggagttttgaactccggcgcggtggtgccaccaccggccactgcgtcggaa 2826915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 8949174 - 8949134
Alignment:
Q  172 tccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  8949174 tccgacgcggtggtgccaccaccggccaccgcgtcggaaaa 8949134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 8656263 - 8656204
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| ||||| |||||||||||||| || |||||| ||| || |||||||||||||    
T  8656263 aatcggagcagtttcaaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 8656204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 8671237 - 8671178
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| ||||| |||||||||||||| || |||||| ||| || |||||||||||||    
T  8671237 aatcggagcagtttcaaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 8671178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 20371949 - 20371908
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  20371949 aaactccggcacggtggtgc-accaccggccaccgcgccggaa 20371908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 20397673 - 20397632
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  20397673 aaactccggcacggtggtgc-accaccggccaccgcgccggaa 20397632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24331 - 24536
Alignment:
Q  1 gctcagatccgcttcaaaaggtaaaaagaggtaacnnnnnnnttcgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttg 100  Q
    ||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24331 gctcagatccgcttcaaaaggtaaaaagaggtaa---aaaaatccgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttg 24427  T
Q  101 tggatttgaacttaggaagaaaaaggatatctgaaaacgcgttttatcttgtaatcggaggagtttgaaactccggcgcggtggtgccaccaccggccac 200  Q
    |||||||||||||||||| |||||||||||   |||  ||     |  ||   |||||| || ||||||||||||| |||||||||||||||||||||||    
T  24428 tggatttgaacttaggaataaaaaggatattcaaaagtgcaaaaaaaatttagatcggaagactttgaaactccggtgcggtggtgccaccaccggccac 24527  T
Q  201 cgcgccgga 209  Q
    |||||||||    
T  24528 cgcgccgga 24536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 50825230 - 50825324
Alignment:
Q  43 ttcgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatctgaaaa 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50825230 ttcgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatctaaaaa 50825324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 50850630 - 50850536
Alignment:
Q  43 ttcgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatctgaaaa 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50850630 ttcgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatctaaaaa 50850536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 1005795 - 1005727
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaaga 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  1005795 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 1005727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 2216620 - 2216539
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaagaag 234  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||| | | |||||||||||    
T  2216620 aatcggaggagtttgaaactccggcgcggtggcgccaccaccggccaccgcaccggaaattttttgcttaccggagaagaag 2216539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 11262347 - 11262267
Alignment:
Q  153 aatcggaggagtttgaaactcc-ggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaaga 232  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||  |||| ||| |||||||||    
T  11262347 aatcggaggagtttaaaactcccggcgcggtggcgccaccaccggccaccgcgccggaaaaccgttgctcaccggagaaga 11262267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 16289537 - 16289596
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  16289537 aatcggaggactttaaaactccggcgcggtggcgccaccaccggccaccgcgccggaaaa 16289596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 4504984 - 4504930
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  4504984 gaggagtttgaaattccggcgtggtggtgccaccaccggccaccgcgccggaaaa 4504930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 4444339 - 4444398
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||    
T  4444339 aatcggaggagttttgaactccggcgtggtggtgccaccgccggccaccgcgccggaaaa 4444398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 52987458 - 52987499
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  52987458 aactccggcgcggtggtgccaccaccgaccaccgcgccggaa 52987499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 1775839 - 1775883
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||| || |||||||||||||||||||||||||||    
T  1775839 aaactccggcgcggcggcgccaccaccggccaccgcgccggaaaa 1775883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 4887692 - 4887736
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||| || |||||||||||||||||||||||||||    
T  4887692 aaactccggcgcggcggcgccaccaccggccaccgcgccggaaaa 4887736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 5517811 - 5517767
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||| || |||||||||||||||||||||||||||    
T  5517811 aaactccggcgcggcggcgccaccaccggccaccgcgccggaaaa 5517767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 13603435 - 13603387
Alignment:
Q  160 ggagtttgaaa-ctccggcgcggtggtgccaccaccggccaccgcgccg 207  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  13603435 ggagtttgaaaactccggcgcggtggtgccaccatcggccaccgcgccg 13603387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 9184944 - 9184899
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  9184944 tttgaaactccggcacggtggtgc-accaccggccaccgcgccggaa 9184899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 18954665 - 18954624
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  18954665 aaactccggcgcggtggtgc-accaccggccaccgcgccggaa 18954624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 20053168 - 20053222
Alignment:
Q  159 aggagtttgaaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| ||| ||||||||||| || |||||||||||||||||||||||||||    
T  20053168 aggagttttaaagctccggcgcggcggcgccaccaccggccaccgcgccggaaaa 20053222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 20075828 - 20075882
Alignment:
Q  159 aggagtttgaaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| ||| ||||||||||| || |||||||||||||||||||||||||||    
T  20075828 aggagttttaaagctccggcgcggcggcgccaccaccggccaccgcgccggaaaa 20075882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 27551931 - 27551888
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  27551931 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 27551888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 28469304 - 28469261
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  28469304 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 28469261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 31852372 - 31852325
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccg 207  Q
    |||||||  |||||| |||| |||||||||||||||||||||||||||    
T  31852372 ggagttttgaactccagcgcagtggtgccaccaccggccaccgcgccg 31852325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 23755578 - 23755544
Alignment:
Q  178 gcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| ||||||||||||||||||||||||||    
T  23755578 gcggtggtaccaccaccggccaccgcgccggaaaa 23755544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 50754270 - 50754220
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||  |||||||| ||||||||| ||||||||||||| |||||||||    
T  50754270 ggagttttgaactccggtgcggtggtgtcaccaccggccactgcgccggaa 50754220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 33298965 - 33299054
Alignment:
Q  43 ttcgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatct 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33298965 ttcgtttctatttgtgtagatctaggacgattcaagcttgttttcaaaattctgtttgtggatttgaacttaggaagaaaaaggatatct 33299054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 27048729 - 27048655
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaaga 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  27048729 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 27048655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 27058973 - 27058899
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaaga 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  27058973 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 27058899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 3042385 - 3042464
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaaga 232  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  |||| ||| |||||||||    
T  3042385 aatcggaggagtttaaaactccggcgcggtggcgccaccaccggccaccgcgccggaaaaccgttgctcaccggagaaga 3042464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 16587793 - 16587874
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaagaag 234  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||  ||||||||||    
T  16587793 aatcggaagagtttgaaactccggcgcggtggcgccaccaccggcaaccgcgccggaaaatttttgctcactggagaagaag 16587874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 16607587 - 16607506
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaagaag 234  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||  ||||||||||    
T  16607587 aatcggaagagtttgaaactccggcgcggtggcgccaccaccggcaaccgcgccggaaaatttttgctcactggagaagaag 16607506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 30996997 - 30996949
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30996997 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 30996949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 15390739 - 15390672
Alignment:
Q  154 atcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttc 221  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  15390739 atcggaagactttgaaactccggcgcggtggtgccaacaccggccaccgcgccgggaaatttttgttc 15390672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 5488225 - 5488164
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 214  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||    
T  5488225 aatcggcggagtttcacactccggcgcggtggtgccaccaccggccaccgtgccggaaaatt 5488164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 24919161 - 24919222
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 214  Q
    ||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||    
T  24919161 aatcggaggagtttcgaactccggcgcggtggtgccactgccggccaccgcgccggaaaatt 24919222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 24296488 - 24296429
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||    
T  24296488 aatcggaggagttttgaactccggcgtggtggtgccaccgccggccaccgcgccggaaaa 24296429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 24310519 - 24310460
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||    
T  24310519 aatcggaggagttttgaactccggcgtggtggtgccaccgccggccaccgcgccggaaaa 24310460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 20216009 - 20216071
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattg 215  Q
    |||||||| |||||  | ||||||||||||||||||||| |||||||||||||||||||||||    
T  20216009 aatcggagaagttttgagctccggcgcggtggtgccaccgccggccaccgcgccggaaaattg 20216071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 22110030 - 22110092
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattg 215  Q
    |||||||| |||||  | ||||||||||||||||||||| |||||||||||||||||||||||    
T  22110030 aatcggagaagttttgagctccggcgcggtggtgccaccgccggccaccgcgccggaaaattg 22110092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 5995692 - 5995735
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  5995692 aactccggcgcggtggtgccaccaccggccaccgtgccggaaaa 5995735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 1141767 - 1141806
Alignment:
Q  171 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  1141767 ctccggcgcggcggtgccaccaccggccaccgcgccggaa 1141806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 17092527 - 17092468
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||||  |||||||||| ||||| |||||| ||||||| ||||||||||||    
T  17092527 aatcggaggagttttgaactccggcgtggtggcgccaccgccggccatcgcgccggaaaa 17092468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 19827626 - 19827583
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  19827626 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 19827583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 877469 - 877419
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||  ||||||| |||||||||||||||| |||||||| ||||||||    
T  877469 ggagttttgaactccgacgcggtggtgccaccatcggccaccacgccggaa 877419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 13289842 - 13289784
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    |||||||| |||||  | |||||||||||||| |||||||||| || ||||||||||||    
T  13289842 aatcggagaagttttgagctccggcgcggtggcgccaccaccgtccgccgcgccggaaa 13289784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 13304809 - 13304751
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    |||||||| |||||  | |||||||||||||| |||||||||| || ||||||||||||    
T  13304809 aatcggagaagttttgagctccggcgcggtggcgccaccaccgtccgccgcgccggaaa 13304751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 13463836 - 13463901
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaagaag 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13463836 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaattggtgttcatcggagaagaag 13463901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 18750196 - 18750249
Alignment:
Q  159 aggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18750196 aggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 18750249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 18597081 - 18597139
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  18597081 aatcggaggagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 18597139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 179874 - 179827
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccg 207  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||    
T  179874 ggagttttgaactccggcgcggtggtgccaccaccggccatcgcgccg 179827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 3650803 - 3650842
Alignment:
Q  171 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  3650803 ctccggcgcggcggtgccaccaccggccaccgcgccggaa 3650842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 8402117 - 8402158
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  8402117 aactccggtgtggtggtgccaccaccggccaccgcgccggaa 8402158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 20500898 - 20500935
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccg 195  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  20500898 gaggagtttgaaactccggcgtggtggtgccaccaccg 20500935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 35197953 - 35197987
Alignment:
Q  178 gcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||| ||||||||||||||||||    
T  35197953 gcggtggtgccaccacaggccaccgcgccggaaaa 35197987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 22348305 - 22348261
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcg 204  Q
    |||||||  ||||||| ||| ||||||||||||||||||||||||    
T  22348305 ggagttttgaactccgacgcagtggtgccaccaccggccaccgcg 22348261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1120 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 385 - 439
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  385 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 17686432 - 17686378
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17686432 gaggagtttgaaactccggcgcggtggtgccaccaccggccatcgcgccggaaaa 17686378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 25262588 - 25262642
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25262588 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaatttgttg 25262642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 21851591 - 21851538
Alignment:
Q  159 aggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21851591 aggagtttaaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 21851538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 21860026 - 21859973
Alignment:
Q  159 aggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21860026 aggagtttaaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 21859973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 33308233 - 33308186
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33308233 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 33308186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 34543105 - 34543046
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  34543105 aatcggcggagtttcacactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 34543046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 27425347 - 27425289
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  27425347 aatcggaggagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 27425289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 27440393 - 27440335
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  27440393 aatcggaggagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 27440335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 39756282 - 39756339
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  39756282 aatcggaggagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaa 39756339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 21150010 - 21150069
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||| ||||||||||||||||| ||||||||| || ||||||||||||||    
T  21150010 aatcggaggagtttaaaactccggcgcggtggcgccaccaccagctaccgcgccggaaaa 21150069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 21322062 - 21322005
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||    
T  21322062 aatcggaggggtttcgacctccggcgcggtggtgccaccaccggccaccgcgccggaa 21322005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 22186090 - 22186135
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  22186090 aactccggcgcggtggtgccaccaccggccaccgcgccagaaaatt 22186135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 34529132 - 34529072
Alignment:
Q  153 aatcggaggagtttgaaactccgg-cgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  34529132 aatcggcggagtttcacactccgggcgcggtggtgccaccaccggccaccgcgccggaaaa 34529072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 20622458 - 20622501
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  20622458 aactccggcgcggtggtgccaccaccggccaccgcgctggaaaa 20622501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 28479928 - 28479979
Alignment:
Q  161 gagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||||||||||    
T  28479928 gagtttaaaactccggcgcggtggcgccaccaccggccactgcgccggaaaa 28479979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 44373736 - 44373782
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||    
T  44373736 tttgaaactccggcacggtggtgc-accaccggccaccgcgccggaaa 44373782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 44389647 - 44389693
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 211  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||    
T  44389647 tttgaaactccggcacggtggtgc-accaccggccaccgcgccggaaa 44389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 27605587 - 27605541
Alignment:
Q  163 gtttgaaactccggcgcggtggtgccaccaccggccaccgcgccgga 209  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  27605587 gtttgaaactccgacgcggtggtgccacctccggccaccgtgccgga 27605541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 25193149 - 25193113
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgc 205  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25193149 aactccggcgcggtggtgccaccaccggccactgcgc 25193113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 26718699 - 26718656
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  26718699 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 26718656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 26732887 - 26732844
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  26732887 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 26732844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 4281573 - 4281608
Alignment:
Q  177 cgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||| |||||||||||||||||||||||||||||    
T  4281573 cgcggtagtgccaccaccggccaccgcgccggaaaa 4281608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 11626042 - 11625983
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| |||||  ||||||||||||| ||||||||| ||| || |||||||||||||    
T  11626042 aatcggagcagtttcgaactccggcgcggaggtgccaccgccgtcctccgcgccggaaaa 11625983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 25995565 - 25995531
Alignment:
Q  172 tccggcgcggtggtgccaccaccggccaccgcgcc 206  Q
    |||| ||||||||||||||||||||||||||||||    
T  25995565 tccgacgcggtggtgccaccaccggccaccgcgcc 25995531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 35038869 - 35038910
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  35038869 aaactccggcacggtggtgc-accaccggccaccgcgccggaa 35038910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 2562 - 2503
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||    
T  2562 aatcggaggagtttaaaactccggcgcggtggcgccaccaccggctaccgcgccggaaaa 2503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 19500 - 19563
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgt 216  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  19500 aatcggaggagtttagaactccggcgcggtggtgccaccgccggccaccgcgccggaaagttgt 19563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 4838775 - 4838716
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  4838775 aatcggcggagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 4838716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 23091546 - 23091597
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcg 204  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23091546 aatcggaggagtttaaaactccggcgcggtggtgccaccaccggccaccgcg 23091597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 26872703 - 26872660
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26872703 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 26872660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 36578012 - 36577971
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36578012 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 36577971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 26875161 - 26875118
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  26875161 aactccggcgcggtggtgccaccaccggccaccgcgtcggaaaa 26875118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 4836500 - 4836550
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  4836500 ggagttttgaactccggcgcggtggtgccaccaccggccaccacgccggaa 4836550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 4841945 - 4841995
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  4841945 ggagttttgaactccggcgcggtggtgccaccaccggccaccacgccggaa 4841995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 17663679 - 17663632
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  17663679 tttgaaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 17663632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 17682835 - 17682788
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  17682835 tttgaaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 17682788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 2750291 - 2750241
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||| ||||    
T  2750291 ggagttttgaactccggcgcggtggttccaccaccggccaccgcgctggaa 2750241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 20866900 - 20866839
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 214  Q
    |||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||    
T  20866900 aatcggcggagtttcacactctggcgcggtggtgccaccaccggccaccgcgccggaaaatt 20866839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 4749093 - 4749045
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4749093 tttggaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 4749045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 12997535 - 12997578
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12997535 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 12997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 17141856 - 17141915
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||    
T  17141856 aatcggaggattttaaaactccggcgcggtggcgccaccaccggctaccgcgccggaaaa 17141915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 24923275 - 24923334
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||| |||||||||||||||||  |||||||||||||| |||||||||||    
T  24923275 aatcggaggagtttaaaactccggcgcggtggcaccaccaccggccactgcgccggaaaa 24923334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 32215913 - 32215972
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  32215913 aatcggaggggtttcgaactccggcgcggtggtgccaccaccggccaccgcgctggaaaa 32215972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 772277 - 772331
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 214  Q
    ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||    
T  772277 ggagtttcacactccggcgcggaggtgccaccaccggccaccgcgccggaaaatt 772331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 52296722 - 52296783
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 214  Q
    |||||| |||||||  ||||||||||| |||||||||||||||||||||||| |||||||||    
T  52296722 aatcggcggagttttgaactccggcgcagtggtgccaccaccggccaccgcgtcggaaaatt 52296783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 17008284 - 17008361
Alignment:
Q  156 cggaggagtttgaaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaaga 232  Q
    ||||||||||| ||| ||||||||||| |  |||||||||||||||||||||||||||  |||| ||| |||||||||    
T  17008284 cggaggagttttaaaactccggcgcggcgacgccaccaccggccaccgcgccggaaaaccgttgctcaccggagaaga 17008361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 17022248 - 17022325
Alignment:
Q  156 cggaggagtttgaaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgttcatcggagaaga 232  Q
    ||||||||||| ||| ||||||||||| |  |||||||||||||||||||||||||||  |||| ||| |||||||||    
T  17022248 cggaggagttttaaaactccggcgcggcgacgccaccaccggccaccgcgccggaaaaccgttgctcaccggagaaga 17022325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 5405338 - 5405294
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||| || |||||||||||||||||||||||||||    
T  5405338 aaactccggcgcggcggcgccaccaccggccaccgcgccggaaaa 5405294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 638118 - 638076
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccg 202  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  638118 ggagttttgaactccggcgcggtggtgccaccaccggccaccg 638076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 21531399 - 21531356
Alignment:
Q  168 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  21531399 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 21531356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 48077653 - 48077685
Alignment:
Q  180 ggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||||||||||||||    
T  48077653 ggtggtgccaccaccggccaccgcgccggaaaa 48077685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 40096409 - 40096350
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| ||||| |||||||||||||| || |||||| ||| || |||||||||||||    
T  40096409 aatcggagcagtttcaaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 40096350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 40111420 - 40111361
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||| ||||| |||||||||||||| || |||||| ||| || |||||||||||||    
T  40111420 aatcggagcagtttcaaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 40111361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 26447211 - 26447261
Alignment:
Q  160 ggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||  ||||||||| |||||||||||||| |||||||||||| ||||    
T  26447211 ggagttttgaactccggcacggtggtgccaccatcggccaccgcgctggaa 26447261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 64725 - 64671
Alignment:
Q  158 gaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||||||||    
T  64725 gaggaggttgaaactccggcgcggtggtgccaccaacgaccaccgcgccggaaaa 64671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1896 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1896
Description:

Target: scaffold1896; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 441 - 484
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 212  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  441 aactccggcgcggtggtgccactaccggccaccgcgccggaaaa 484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 4255 - 4316
Alignment:
Q  153 aatcggaggagtttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 214  Q
    ||||||||||||||  |||||||||||||||||||| || |||| |||||||| ||||||||    
T  4255 aatcggaggagtttcgaactccggcgcggtggtgccgccgccggtcaccgcgctggaaaatt 4316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2141 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2141
Description:

Target: scaffold2141; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 158 - 197
Alignment:
Q  171 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  158 ctccggcgcggcggtgccaccaccggccaccgcgccggaa 197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 6074 - 6035
Alignment:
Q  169 aactccggcgcggtggtgccaccaccggccaccgcgccgg 208  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  6074 aactccggcacggtggtgccaccaccggccaccgcgccgg 6035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 11845 - 11890
Alignment:
Q  164 tttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 210  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||    
T  11845 tttgaaactccggcacggtggtg-caccaccggccaccgtgccggaa 11890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University