View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15204_high_8 (Length: 517)

Name: NF15204_high_8
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15204_high_8
NF15204_high_8
[»] chr7 (19 HSPs)
chr7 (38-293)||(29932868-29933111)
chr7 (347-499)||(8363737-8363890)
chr7 (342-459)||(18887197-18887314)
chr7 (346-499)||(37126633-37126786)
chr7 (354-499)||(18295083-18295228)
chr7 (344-459)||(31422008-31422123)
chr7 (294-357)||(8363929-8363992)
chr7 (346-499)||(19340982-19341128)
chr7 (294-351)||(38871472-38871529)
chr7 (288-352)||(21451984-21452048)
chr7 (294-357)||(18887332-18887395)
chr7 (442-496)||(10509278-10509332)
chr7 (391-497)||(25156522-25156628)
chr7 (346-387)||(17264527-17264568)
chr7 (346-410)||(3091410-3091476)
chr7 (293-357)||(31422143-31422207)
chr7 (440-499)||(41596718-41596777)
chr7 (446-496)||(10511180-10511230)
chr7 (293-334)||(44660873-44660914)
[»] chr6 (11 HSPs)
chr6 (346-499)||(10894998-10895151)
chr6 (346-499)||(97259-97407)
chr6 (344-487)||(17749961-17750104)
chr6 (346-493)||(27156448-27156595)
chr6 (346-499)||(26092585-26092739)
chr6 (346-487)||(6059806-6059947)
chr6 (294-351)||(6807379-6807436)
chr6 (384-474)||(25600471-25600561)
chr6 (308-357)||(10894906-10894955)
chr6 (293-352)||(32398517-32398576)
chr6 (440-499)||(15667170-15667228)
[»] chr5 (20 HSPs)
chr5 (342-497)||(22270281-22270436)
chr5 (346-499)||(35635009-35635162)
chr5 (347-499)||(38395071-38395223)
chr5 (346-499)||(19676880-19677034)
chr5 (346-499)||(19663066-19663219)
chr5 (346-499)||(37259160-37259313)
chr5 (297-352)||(29086371-29086426)
chr5 (294-357)||(22270200-22270263)
chr5 (346-406)||(29086261-29086323)
chr5 (440-499)||(28313381-28313440)
chr5 (354-416)||(19647086-19647148)
chr5 (346-385)||(21744500-21744539)
chr5 (440-499)||(23121063-23121122)
chr5 (346-385)||(42740291-42740330)
chr5 (420-474)||(38352053-38352107)
chr5 (292-333)||(18739126-18739167)
chr5 (294-335)||(19647209-19647250)
chr5 (346-379)||(38352107-38352140)
chr5 (294-334)||(41958107-41958147)
chr5 (294-334)||(43300738-43300778)
[»] chr8 (14 HSPs)
chr8 (342-494)||(42809633-42809785)
chr8 (342-494)||(33363695-33363847)
chr8 (353-499)||(20098970-20099115)
chr8 (347-499)||(18427644-18427796)
chr8 (367-499)||(32382205-32382337)
chr8 (367-499)||(32436160-32436292)
chr8 (294-351)||(43916868-43916925)
chr8 (294-357)||(33363865-33363928)
chr8 (308-351)||(35449214-35449257)
chr8 (368-459)||(35538767-35538858)
chr8 (294-357)||(42809803-42809866)
chr8 (442-496)||(33236604-33236658)
chr8 (440-499)||(12868392-12868451)
chr8 (436-468)||(21468980-21469012)
[»] chr3 (15 HSPs)
chr3 (342-494)||(22126441-22126593)
chr3 (344-494)||(2736604-2736754)
chr3 (342-459)||(40925685-40925802)
chr3 (346-499)||(19971958-19972111)
chr3 (346-499)||(8425258-8425406)
chr3 (346-498)||(21496697-21496848)
chr3 (346-499)||(54788865-54789026)
chr3 (346-487)||(14195253-14195393)
chr3 (295-399)||(38000424-38000534)
chr3 (342-394)||(43946346-43946398)
chr3 (294-357)||(2736773-2736836)
chr3 (294-357)||(40925820-40925883)
chr3 (294-357)||(22126360-22126423)
chr3 (442-500)||(39622016-39622074)
chr3 (294-335)||(14195160-14195201)
[»] scaffold0005 (1 HSPs)
scaffold0005 (342-459)||(42338-42455)
[»] chr4 (19 HSPs)
chr4 (342-459)||(14797276-14797393)
chr4 (346-499)||(16401061-16401214)
chr4 (342-494)||(37465931-37466083)
chr4 (346-499)||(55405031-55405184)
chr4 (346-499)||(44504755-44504908)
chr4 (346-499)||(43335352-43335495)
chr4 (294-351)||(38115912-38115969)
chr4 (294-351)||(29947658-29947716)
chr4 (436-494)||(53816242-53816300)
chr4 (346-405)||(7114351-7114410)
chr4 (346-416)||(53816173-53816243)
chr4 (294-351)||(44504952-44505009)
chr4 (294-357)||(20038697-20038760)
chr4 (436-499)||(27599242-27599305)
chr4 (294-357)||(37465855-37465918)
chr4 (440-499)||(42883686-42883745)
chr4 (346-384)||(24535146-24535184)
chr4 (294-335)||(9816459-9816500)
chr4 (294-335)||(33753008-33753049)
[»] chr1 (16 HSPs)
chr1 (346-499)||(27133030-27133183)
chr1 (346-497)||(47074432-47074582)
chr1 (346-459)||(181505-181618)
chr1 (346-499)||(3288116-3288269)
chr1 (384-499)||(51065032-51065147)
chr1 (380-496)||(11052520-11052636)
chr1 (346-499)||(4692645-4692796)
chr1 (298-351)||(20727809-20727862)
chr1 (309-357)||(10800942-10800990)
chr1 (346-394)||(16763918-16763966)
chr1 (356-394)||(10801031-10801069)
chr1 (294-335)||(3288021-3288062)
chr1 (346-402)||(8920029-8920085)
chr1 (310-357)||(27133221-27133268)
chr1 (346-385)||(51064716-51064755)
chr1 (295-334)||(51286692-51286731)
[»] scaffold0024 (1 HSPs)
scaffold0024 (346-499)||(11829-11982)
[»] chr2 (7 HSPs)
chr2 (346-499)||(41318118-41318271)
chr2 (346-448)||(5885371-5885473)
chr2 (346-499)||(5088683-5088836)
chr2 (346-487)||(17738024-17738163)
chr2 (370-499)||(9844782-9844910)
chr2 (297-335)||(41318322-41318360)
chr2 (293-345)||(32340064-32340116)
[»] scaffold0285 (1 HSPs)
scaffold0285 (346-440)||(7764-7851)
[»] scaffold0054 (1 HSPs)
scaffold0054 (346-394)||(3543-3591)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 38 - 293
Target Start/End: Original strand, 29932868 - 29933111
Alignment:
Q  38 tttctgttgtgattttgtactttcatatatcattacgaaacagccttttatatttataactatttttaaaaattgtttctcaaaacaaacattactctca 137  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  29932868 tttctgttgtgattttgtactttcatatatcattacaaaacagccttttatatttataactatttttaaaaattgtttctcgaaacaaagattactctca 29932967  T
Q  138 tagaagcactagcactctagcagcctccccctgcatcgctgtgtaacttgtgctctcccttccctcttcacttcgtgtaagacagttatatattatgttt 237  Q
    ||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||   |||||||    
T  29932968 tagaagca--------ctagcagcctccccctgcatcgctgtgtaacttgtgctttcccttccctcttcacttcgtgtaagacaattata---tatgttt 29933056  T
Q  238 aacctttaatttaactacttgtttgtttctaactaaattttttaattgcttgttta 293  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  29933057 aacctttaatttaattacttgtttgtttctaactaaa-cttttaattgcttgttta 29933111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 347 - 499
Target Start/End: Complemental strand, 8363890 - 8363737
Alignment:
Q  347 ataaaccaaaaaccgatcattcaaaatttaaactacataatata-taaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||| |||||||||||    
T  8363890 ataaaccaaaaatcgatcattcaaaatttaaactacataatataataaagtcgttcattacatacctaaagatgcactttacgctttccgagtgacttga 8363791  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| | || ||| ||||| |||| |||||||||||||||||||    
T  8363790 aatcatcaataattgattcagaactaatacatgcgctaatttccctttcaatat 8363737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 342 - 459
Target Start/End: Complemental strand, 18887314 - 18887197
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgac 441  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  18887314 tcaaaataaaccaaaaaccgttcatttaaaatttaaactacataatatataaagtcgatcattacatacctaaagatgcactttacgctttccgagtgac 18887215  T
Q  442 ttgaaatcatcaataatt 459  Q
    ||||||||||||||||||    
T  18887214 ttgaaatcatcaataatt 18887197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 37126786 - 37126633
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| ||||||||||||||||||| | ||||||| || || ||||| |||| |||  |||||   || ||||| ||||| |||||||||||    
T  37126786 aataaaccaaaaatcgatcattcaaaatttaaagtgcataatacatcaaatcgataattaaatatttaaagtgacattttacgctttccgagtgacttga 37126687  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37126686 aatcatcaataattaactcggaactaatagatgcactaatttccctttcaatat 37126633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 354 - 499
Target Start/End: Complemental strand, 18295228 - 18295083
Alignment:
Q  354 aaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatca 453  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||   |||||||| | ||| || |||||| ||||||||     
T  18295228 aaaaatcgatcattcaaaatttaaactacataatatataaagtcgatcattaaatacttaaagtgacactttacgccttccgaatgacttaaaatcatcc 18295129  T
Q  454 ataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
     |||||||||||||| || || ||||||||||||||||||||||||    
T  18295128 gtaattaactcggaactagtacatgcactaatttccctttcaatat 18295083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 344 - 459
Target Start/End: Complemental strand, 31422123 - 31422008
Alignment:
Q  344 aaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgactt 443  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | || |||| ||||  |||||||||    
T  31422123 aaaataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcgattattacatacctaaagacgtacattacgcttttcgagtgactt 31422024  T
Q  444 gaaatcatcaataatt 459  Q
    ||||||||||||||||    
T  31422023 gaaatcatcaataatt 31422008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 8363992 - 8363929
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  8363992 cagtggcggagccagacaaaaaagtttggggtggccgccatctcgccatcaaaataaactaaaa 8363929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 19341128 - 19340982
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataata-tataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttg 444  Q
    |||||| |||||| ||||||||| ||||||||| || |||||| |||||||||||||||||        |||   |||||||| |||||||| ||||||     
T  19341128 aataaatcaaaaatcgatcattccaaatttaaattatataataatataaagtcgatcatta--------aagtgtcactttacgctttctgaatgactta 19341037  T
Q  445 aaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||| || |||| ||| ||||| |||||||||||||  |||||||||    
T  19341036 aaatcatcaatagttgactcagaactaatacatgcactaatttcattttcaatat 19340982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 38871472 - 38871529
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaa 351  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||    
T  38871472 cagtggcggagccagacaaaaaagtttggagtggccgccatcccgccatcaaaataaa 38871529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 21451984 - 21452048
Alignment:
Q  288 tgtttacagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaac 352  Q
    ||||||||||||||||| | | ||||||| |||||||||||||||||| ||||||||||||||||    
T  21451984 tgtttacagtggcggagccagccaaaaaattttggggtggccgccatctcgccatcaaaataaac 21452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 18887395 - 18887332
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||| | ||||||||  ||||||||||||| ||||||||||||||||||||| ||||    
T  18887395 cagtggcggagccagacaaaaatatttggggtggccgtcatcccgccatcaaaataaactaaaa 18887332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 10509278 - 10509332
Alignment:
Q  442 ttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaa 496  Q
    |||||||||||||||||  |||||||| ||||| |||||||||||||||||||||    
T  10509278 ttgaaatcatcaataatagactcggaactaatacatgcactaatttccctttcaa 10509332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 497
Target Start/End: Original strand, 25156522 - 25156628
Alignment:
Q  391 taaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatcaataattaactcggaattaatagatgcactaatttccc 490  Q
    ||||||||||||||| |||  |||||   |||||||||||||  || |||||| ||||||||||||||| |||| ||| ||| | ||||| |||||||||    
T  25156522 taaagtcgatcattaaatatttaaagtgacactttacacttttcgattgacttaaaatcatcaataattgactcagaactaacacatgcattaatttccc 25156621  T
Q  491 tttcaat 497  Q
    | |||||    
T  25156622 tatcaat 25156628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 17264527 - 17264568
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataat 387  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  17264527 aataaatcaaaaaccgatcattcaaaatttaaactacataat 17264568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 3091476 - 3091410
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactac--ataatatataaagtcgatcattacatac 410  Q
    ||||||| ||||  |||||||||||||||||||||||  |||||| |||||||||||||||| ||||    
T  3091476 aataaacaaaaattcgatcattcaaaatttaaactacatataatacataaagtcgatcattaaatac 3091410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 31422207 - 31422143
Alignment:
Q  293 acagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    |||||||| ||| | |||||||| ||||||| |||||  ||||||||||||||||||||| ||||    
T  31422207 acagtggcagagccagacaaaaatgtttgggatggccatcatcccgccatcaaaataaactaaaa 31422143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 41596777 - 41596718
Alignment:
Q  440 acttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||||||| | |||| ||| |||||  |||||||||||||||||| ||||    
T  41596777 acttgaaatcatcaataactgactcagaactaatacttgcactaatttccctttcgatat 41596718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 10511230 - 10511180
Alignment:
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaa 496  Q
    |||||| ||||||  |||||||| ||||| |||||||||||||||||||||    
T  10511230 aatcatgaataatagactcggaactaatacatgcactaatttccctttcaa 10511180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 44660914 - 44660873
Alignment:
Q  293 acagtggcggagtccgacaaaaaagtttggggtggccgccat 334  Q
    |||||||||||| | |||||||| ||||||||||||||||||    
T  44660914 acagtggcggagccagacaaaaatgtttggggtggccgccat 44660873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 10894998 - 10895151
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10894998 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacgctttctgagtgacttga 10895097  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10895098 aatcatcaataattgactcggaattaatagatgcactaatttccctttcaatat 10895151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 97407 - 97259
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| ||||||||||||||||||| | ||||||| ||     |||| |||| |||  |||||   || ||||| ||||| |||||||||||    
T  97407 aataaaccaaaaatcgatcattcaaaatttaaagtgcataatacat-----cgataattaaatatttaaagtgacattttacgctttccgagtgacttga 97313  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  97312 aatcatcaataattgactcggaactaatagatgcactaatttccctttcaatat 97259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 344 - 487
Target Start/End: Complemental strand, 17750104 - 17749961
Alignment:
Q  344 aaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgactt 443  Q
    ||||||||  |||||  ||||||||||||||| || ||||||||||||||| |||||||||| |||| |||||   |||||||| |||||||| ||||||    
T  17750104 aaaataaattaaaaattgatcattcaaaatttgaagtacataatatataaattcgatcattaaatacttaaagtgacactttacgctttctgaatgactt 17750005  T
Q  444 gaaatcatcaataattaactcggaattaatagatgcactaattt 487  Q
    |||||||| ||||||| |||||||| ||||| ||||| ||||||    
T  17750004 gaaatcattaataattgactcggaactaatacatgcattaattt 17749961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 346 - 493
Target Start/End: Original strand, 27156448 - 27156595
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||| |||||||  ||||||||||||||||||||||||||||||||||  | ||||||| |||| |||||   ||||||||  |||   ||||||||||    
T  27156448 aataagccaaaaattgatcattcaaaatttaaactacataatatataaaaccaatcattaaatacttaaagtgacactttacgattttcaagtgacttga 27156547  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttcccttt 493  Q
    |||||||||||||| |||| ||| ||||| ||||| ||||||||||||    
T  27156548 aatcatcaataattgactcagaactaatacatgcattaatttcccttt 27156595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 26092739 - 26092585
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||| |||||| |||| |||||||||||||||||||||||| ||||| ||  | |||| |||  |||||   ||||||||  |||| |||||||||||    
T  26092739 aataaatcaaaaatcgataattcaaaatttaaactacataatacataaaatcagtaattaaatatttaaagtgacactttacgttttccgagtgacttga 26092640  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaa-tttccctttcaatat 499  Q
    |||||||||||| | |||||||| |||||||| |||||| |||||||||||||||    
T  26092639 aatcatcaataactgactcggaactaatagatacactaactttccctttcaatat 26092585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 346 - 487
Target Start/End: Original strand, 6059806 - 6059947
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||| || ||  ||| |||| ||||||  || ||||| ||||   |||||||| |    
T  6059806 aataaaccaaaaatcgatcatttaaaatttaaactatataatatataaaatcaatagttaaatacttaaagagacattttacgcttttcaagtgacttaa 6059905  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaattt 487  Q
    |||||||||||||| ||||| || ||||| ||||| ||||||    
T  6059906 aatcatcaataattgactcgaaactaatacatgcattaattt 6059947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 6807436 - 6807379
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaa 351  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  6807436 cagtggcggagccagacaaaaaagtttggggtggccgccatcccgccatcaaaataaa 6807379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 474
Target Start/End: Original strand, 25600471 - 25600561
Alignment:
Q  384 taatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatcaataattaactcggaattaata 474  Q
    ||||||||||||||| ||||||||||| |||| ||||||| |||  |||   |||||||||||||||||||||||| | ||||||||||||    
T  25600471 taatatataaagtcgttcattacatacctaaacatgcactctacgattttcaagtgacttgaaatcatcaataattgattcggaattaata 25600561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 10894906 - 10894955
Alignment:
Q  308 gacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10894906 gacaaaaaagtttggggtggccgccatcccgccatcaaaataaactaaaa 10894955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 32398576 - 32398517
Alignment:
Q  293 acagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaac 352  Q
    |||||||||||| | | ||||||| |||||||||||||||||| ||||||||||||||||    
T  32398576 acagtggcggagccagccaaaaaattttggggtggccgccatctcgccatcaaaataaac 32398517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 15667170 - 15667228
Alignment:
Q  440 acttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||||||||||||||| ||||| ||| |||||  |||||||||||||||||| ||||    
T  15667170 acttgaaatcatcaataat-aactcagaactaatacttgcactaatttccctttcgatat 15667228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 342 - 497
Target Start/End: Original strand, 22270281 - 22270436
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgac 441  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  22270281 tcaaaataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacactttcggagtgac 22270380  T
Q  442 ttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaat 497  Q
    |||||||||||||||||| | || ||| ||||| |  ||||||| |||||||||||    
T  22270381 ttgaaatcatcaataattgattcagaactaatacactcactaatatccctttcaat 22270436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 35635009 - 35635162
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||   || ||||| ||||| |||| ||||||    
T  35635009 aataaaccaaaaaacgatcattcaaaatttaaactacataatatataaagtcgatcattaaatacttaaagtgacattttacgctttccgagtaacttga 35635108  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||| |||||| |||| ||| ||||| |||||||||||||||||| |||||    
T  35635109 aatcatcgataattgactcagaactaatacatgcactaatttcccttttaatat 35635162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 347 - 499
Target Start/End: Original strand, 38395071 - 38395223
Alignment:
Q  347 ataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatg-cactttacactttctgagtgacttga 445  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| || ||||| ||||| |||| ||||||    
T  38395071 ataaactaaaaaacgatcattcaaaatttaaactacataatatataaagtcgatcattagatacttaaa-atgacattttacgctttccgagtaacttga 38395169  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||| |||||| |||| ||| ||||| |||||||||||||||||| |||||    
T  38395170 aatcatcgataattgactcagaactaatacatgcactaatttcccttttaatat 38395223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 19676880 - 19677034
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaa-tttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttg 444  Q
    ||||||||||||| || ||| |||||| ||||||||||||||||||||||||||||| ||| |||| |||||   || ||||| ||||  |||||| ||     
T  19676880 aataaaccaaaaatcggtcaatcaaaaatttaaactacataatatataaagtcgatccttaaatacttaaagtgacaatttacgcttttcgagtgattta 19676979  T
Q  445 aaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  19676980 aaatcatcaataattgactcggaactaatacatgcactaatttccctttcaatat 19677034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 19663066 - 19663219
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||   || ||||  ||||  |||||| ||||    
T  19663066 aataaatcaaaaatcgattattcaaaatttaaactacataatatataaagtcgatcattaaatacttaaagtgacaatttatgcttttcgagtgatttga 19663165  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| ||| | || ||||| ||||||||||||| ||||||||||    
T  19663166 aatcatcaataattgacttgaaactaatacatgcactaatttcactttcaatat 19663219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 37259313 - 37259160
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||  |||||||||||||| |||||||| ||||| |||||||||||||||| |||  |||||   |||||||  |||||  ||||||||||    
T  37259313 aataaaccaaaagtcgatcattcaaaatgtaaactacgtaatacataaagtcgatcattaaatatttaaagtgacactttatgctttccaagtgacttga 37259214  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||| |||||||||| | ||| || ||||| |||||| ||||||| |||||||||    
T  37259213 aatgatcaataattgagtcgaaactaatacatgcacaaatttccttttcaatat 37259160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 29086426 - 29086371
Alignment:
Q  297 tggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaac 352  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  29086426 tggcagagtcggacaaaaaagtttggggtggccgtcatcccgccatcaaaataaac 29086371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 22270200 - 22270263
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||| | |||||||| ||||||||||||||  |||||||||||||||||||| ||||    
T  22270200 cagtggcggagccagacaaaaatgtttggggtggccgttatcccgccatcaaaataaactaaaa 22270263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 29086323 - 29086261
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaact--acataatatataaagtcgatcattac 406  Q
    |||||||||||||| |||||||||||||||| |||  ||||||||||||||||||||| ||||    
T  29086323 aataaaccaaaaactgatcattcaaaatttatactacacataatatataaagtcgatccttac 29086261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 28313440 - 28313381
Alignment:
Q  440 acttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||||||| |||||| ||| |||||  |||||||||||| ||||||||||    
T  28313440 acttgaaatcatcaataactaactcagaactaatacttgcactaatttcactttcaatat 28313381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 19647148 - 19647086
Alignment:
Q  354 aaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaag 416  Q
    ||||| || ||||||||||||||||||||||||| |||||| ||||| |||| |||| |||||    
T  19647148 aaaaatcgttcattcaaaatttaaactacataatgtataaaatcgataattaaatacttaaag 19647086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 21744500 - 21744539
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacata 385  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  21744500 aataaaccaaaaatcgattattcaaaatttaaactacata 21744539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 23121063 - 23121122
Alignment:
Q  440 acttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||||||| | |||| ||| |||||  |||||||||||||||||| ||||    
T  23121063 acttgaaatcatcaataactgactcagaactaatacttgcactaatttccctttcgatat 23121122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 42740291 - 42740330
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacata 385  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  42740291 aataaacaaaaaatcgatcattcaaaatttaaactacata 42740330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 474
Target Start/End: Complemental strand, 38352107 - 38352053
Alignment:
Q  420 cactttacactttctgagtgacttgaaatcatcaataattaactcggaattaata 474  Q
    |||||||||||||| |||||||||  |||||||||||||| | |||||| |||||    
T  38352107 cactttacactttccgagtgacttagaatcatcaataattgattcggaactaata 38352053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 18739126 - 18739167
Alignment:
Q  292 tacagtggcggagtccgacaaaaaagtttggggtggccgcca 333  Q
    |||||||||||||   ||||||||||||||||||||||||||    
T  18739126 tacagtggcggagcaagacaaaaaagtttggggtggccgcca 18739167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 19647250 - 19647209
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatc 335  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||    
T  19647250 cagtggcagagtcagacaaaaaagtttggggtgcccgccatc 19647209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 379
Target Start/End: Complemental strand, 38352140 - 38352107
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaac 379  Q
    ||||||||||||| ||||||||||||||||||||    
T  38352140 aataaaccaaaaatcgatcattcaaaatttaaac 38352107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 41958107 - 41958147
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccat 334  Q
    ||||||||||| | |||||||| ||||||||||||||||||    
T  41958107 cagtggcggagccagacaaaaatgtttggggtggccgccat 41958147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 43300778 - 43300738
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccat 334  Q
    ||||||||||| | |||||||| ||||||||||||||||||    
T  43300778 cagtggcggagccagacaaaaatgtttggggtggccgccat 43300738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 8e-50; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 342 - 494
Target Start/End: Complemental strand, 42809785 - 42809633
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgac 441  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||    
T  42809785 tcaaaataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgctttccgagtgac 42809686  T
Q  442 ttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttc 494  Q
    ||||||||||||||||||   || ||| ||||| || ||||||| ||||||||    
T  42809685 ttgaaatcatcaataattgtttcagaactaatacattcactaatatccctttc 42809633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 342 - 494
Target Start/End: Complemental strand, 33363847 - 33363695
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgac 441  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||    
T  33363847 tcaaaataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgctttccgagtgac 33363748  T
Q  442 ttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttc 494  Q
    |||||||||||||||||| | || ||| ||||| || ||||||| ||| ||||    
T  33363747 ttgaaatcatcaataattgattcagaactaatacattcactaatatccttttc 33363695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 353 - 499
Target Start/End: Complemental strand, 20099115 - 20098970
Alignment:
Q  353 caaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatc 452  Q
    |||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||  |||||   |||||||| |||| ||||||| |||||||||||    
T  20099115 caaaaatcgatcattcaaaatt-aaactacataatatataaagtcaatcattaaatatttaaagtgacactttacgctttttgagtgatttgaaatcatc 20099017  T
Q  453 aataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||| |||||||| |||||  ||||||||||||| |||||||||    
T  20099016 aataattgactcggaactaatatttgcactaatttccttttcaatat 20098970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 347 - 499
Target Start/End: Complemental strand, 18427796 - 18427644
Alignment:
Q  347 ataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaa 446  Q
    |||||||||||| | ||  ||||||||||||||||||||||| |  |||||||||||||||||  | |||   |||||||| ||||||||||||||| ||    
T  18427796 ataaaccaaaaatcaattgttcaaaatttaaactacataatacagtaagtcgatcattacataattgaagtgacactttacgctttctgagtgacttaaa 18427697  T
Q  447 atcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||||||||| |||| ||| ||||  || || |||||| |||||||||||    
T  18427696 atcatcaataattgactcagaactaatgcatacattaatttacctttcaatat 18427644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 499
Target Start/End: Complemental strand, 32382337 - 32382205
Alignment:
Q  367 tcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatcaataattaactcgg 466  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||||    |||||||| ||||  |||| ||||||||||| | |||||| |||| |    
T  32382337 tcaaaatttaaactacataatatataaattcgatcattagatacttaaactgacactttacgcttttcgagtaacttgaaatcaccgataattgactccg 32382238  T
Q  467 aattaatagatgcactaatttccctttcaatat 499  Q
    || ||||  ||||| |||||||||||| |||||    
T  32382237 aactaatgcatgcagtaatttcccttttaatat 32382205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 499
Target Start/End: Complemental strand, 32436292 - 32436160
Alignment:
Q  367 tcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatcaataattaactcgg 466  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||||    |||||||| ||||  |||| ||||||||||| | |||||| |||| |    
T  32436292 tcaaaatttaaactacataatatataaattcgatcattagatacttaaactgacactttacgcttttcgagtaacttgaaatcaccgataattgactccg 32436193  T
Q  467 aattaatagatgcactaatttccctttcaatat 499  Q
    || ||||  ||||| |||||||||||| |||||    
T  32436192 aactaatgcatgcagtaatttcccttttaatat 32436160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 43916925 - 43916868
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaa 351  Q
    ||||||| ||||| ||||||||  ||||||||||||||||||| ||||||||||||||    
T  43916925 cagtggcagagtcagacaaaaatatttggggtggccgccatcctgccatcaaaataaa 43916868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 33363928 - 33363865
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    |||||| |||| | |||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  33363928 cagtggtggagccagacaaaaatgtttggggtggccgtcatgccgccatcaaaataaactaaaa 33363865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 35449214 - 35449257
Alignment:
Q  308 gacaaaaaagtttggggtggccgccatcccgccatcaaaataaa 351  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||    
T  35449214 gacaaaaaagtttggggtggctgccatcccgccgtcaaaataaa 35449257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 459
Target Start/End: Original strand, 35538767 - 35538858
Alignment:
Q  368 caaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatcaataatt 459  Q
    |||| |||||||||||||||| |||||||||||||||| |||| |||||   |||||||| ||||  || |||| | ||||| |||||||||    
T  35538767 caaagtttaaactacataatacataaagtcgatcattaaatacttaaagtgacactttacgcttttcgactgacgtaaaatcgtcaataatt 35538858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 42809866 - 42809803
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    |||||||||||   |||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  42809866 cagtggcggagctagacaaaaatgtttggggtggccgtcattccgccatcaaaataaactaaaa 42809803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 33236604 - 33236658
Alignment:
Q  442 ttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaa 496  Q
    |||||||||||||||||  |||||||| ||||| || ||||||||||||||||||    
T  33236604 ttgaaatcatcaataatagactcggaactaatacatacactaatttccctttcaa 33236658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 12868392 - 12868451
Alignment:
Q  440 acttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||||||| | |||| ||| |||||  |||||||||||||||||| ||||    
T  12868392 acttgaaatcatcaataactgactcagaactaatacttgcactaatttccctttcgatat 12868451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 21469012 - 21468980
Alignment:
Q  436 agtgacttgaaatcatcaataattaactcggaa 468  Q
    |||||||||||||||||||||||| ||||||||    
T  21469012 agtgacttgaaatcatcaataattgactcggaa 21468980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 8e-50; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 342 - 494
Target Start/End: Original strand, 22126441 - 22126593
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgac 441  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||    
T  22126441 tcaaaataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagttgatcattacatacctaaagacgcactttacgctttctgagtgac 22126540  T
Q  442 ttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttc 494  Q
    |||||||||||||||||| | || ||| ||||| || ||||||| ||| ||||    
T  22126541 ttgaaatcatcaataattgattcagaactaatacattcactaatatccttttc 22126593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 344 - 494
Target Start/End: Complemental strand, 2736754 - 2736604
Alignment:
Q  344 aaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgactt 443  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||||    
T  2736754 aaaataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgctttcggagtgactt 2736655  T
Q  444 gaaatcatcaataattaactcggaattaatagatgcactaatttccctttc 494  Q
    |||||||||||||||| | || ||| ||||| |  ||||||| ||||||||    
T  2736654 gaaatcatcaataattgattcagaactaatacactcactaatatccctttc 2736604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 342 - 459
Target Start/End: Complemental strand, 40925802 - 40925685
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgac 441  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | |||||||    
T  40925802 tcaaaataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgcttccggagtgac 40925703  T
Q  442 ttgaaatcatcaataatt 459  Q
    ||||||||||||||||||    
T  40925702 ttgaaatcatcaataatt 40925685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 19971958 - 19972111
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| ||||||||||||||||||| | ||||||| ||||| ||||| |||| |||  |||||   || ||||| ||||  |||||||||||    
T  19971958 aataaaccaaaaatcgatcattcaaaatttaaagtgcataatacataaaatcgataattaaatatttaaagtgacattttacgctttgcgagtgacttga 19972057  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19972058 aatcatcaataattgactcggaattaatagatgcactaatttccctttcaatat 19972111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 8425258 - 8425406
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| ||||||||||||||||||| | ||||||| ||     |||| |||| |||  |||||   || ||||| ||||| |||||||||||    
T  8425258 aataaaccaaaaatcgatcattcaaaatttaaagtgcataatacat-----cgataattaaatatttaaagtgacattttacgctttccgagtgacttga 8425352  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  8425353 aatcatcaataattgactcggaactaatagatgcactaatttccctttcaatat 8425406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 346 - 498
Target Start/End: Complemental strand, 21496848 - 21496697
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||||||||||  ||||||||||||||||||||| |||| ||||||| |||||||||| |||| |||||   |||||||| ||||  ||||||| |||    
T  21496848 aataaaccaaaaattgatcattcaaaatttaaacta-ataacatataaaatcgatcattaaatacttaaagtgacactttacgcttttcgagtgacgtga 21496750  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaata 498  Q
    |||||||||||||| ||||| ||  || | || ||||||||||||||||||||    
T  21496749 aatcatcaataattgactcgaaagaaacacatacactaatttccctttcaata 21496697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 54789026 - 54788865
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaa--actaca------taatatataaagtcgatcattacatacataaagatgcactttacactttctgag 437  Q
    ||||||||||||| ||||||||||||||||||  |  |||      ||||| |||||||||||||||| |||| ||||| | |||||||| ||||  ||     
T  54789026 aataaaccaaaaatcgatcattcaaaatttaaatataacatatgagtaataaataaagtcgatcattaaatacttaaagttacactttacgcttttcgaa 54788927  T
Q  438 tgacttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    | |||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||    
T  54788926 taacttgaaatcatcaataattgactcggaactaatacatgcactaatttcactttcaatat 54788865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 346 - 487
Target Start/End: Original strand, 14195253 - 14195393
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||  ||| |||||||||    |||||||| ||||   | || | |||    
T  14195253 aataaactaaaaatcaatcatttaaaatttaaactacataatatataaagtcgatttttaaatacataaattgacactttacgcttt-aaaatggcctga 14195351  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaattt 487  Q
    |||||||||||||| |||||||| ||||| ||||||||||||    
T  14195352 aatcatcaataattgactcggaactaatacatgcactaattt 14195393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 38000424 - 38000534
Alignment:
Q  295 agtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaa------ataaaccaaaaaccgatcattcaaaatttaaactacataata 388  Q
    |||||||||||| || |||||||||||||||||||||||||    |||  ||      ||| |||||||| |||||||||||||||||||||||||||||    
T  38000424 agtggcggagtcggataaaaaagtttggggtggccgccatcaacacatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataata 38000523  T
Q  389 tataaagtcga 399  Q
    |||||||||||    
T  38000524 tataaagtcga 38000534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 43946398 - 43946346
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaa 394  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  43946398 tcaaaataaatcaaaaatcgatcattcaaaatttaaactacataatatataaa 43946346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 2736836 - 2736773
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  2736836 cagtggcggagccagacaaaaatgtttggggtggccgtcatcccgccatcaaaataaactaaaa 2736773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 40925883 - 40925820
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  40925883 cagtggcggagccagacaaaaatgtttggggtggccgtcatcccgccatcaaaataaactaaaa 40925820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 22126360 - 22126423
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||| | |||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  22126360 cagtggcggagccagacaaaaatgtttggggtggccgtcatgccgccatcaaaataaactaaaa 22126423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 500
Target Start/End: Complemental strand, 39622074 - 39622016
Alignment:
Q  442 ttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatatt 500  Q
    |||||||||||||||| ||| || ||| |||||  |||||||||||||||||| |||||    
T  39622074 ttgaaatcatcaataactaattcagaactaatacttgcactaatttccctttcgatatt 39622016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 14195160 - 14195201
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatc 335  Q
    ||||||||||||| ||||||||||||||||||| | ||||||    
T  14195160 cagtggcggagtcagacaaaaaagtttggggtgactgccatc 14195201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 342 - 459
Target Start/End: Complemental strand, 42455 - 42338
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgac 441  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | |||||||    
T  42455 tcaaaataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgcttcccgagtgac 42356  T
Q  442 ttgaaatcatcaataatt 459  Q
    ||||||||||||||||||    
T  42355 ttgaaatcatcaataatt 42338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 342 - 459
Target Start/End: Original strand, 14797276 - 14797393
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgac 441  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | |||||||    
T  14797276 tcaaaataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgcttcccgagtgac 14797375  T
Q  442 ttgaaatcatcaataatt 459  Q
    ||||||||||||||||||    
T  14797376 ttgaaatcatcaataatt 14797393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 16401214 - 16401061
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||||| |||| ||| ||||||||||||||||||||||||| ||||| |||||||||| |||  ||| |   |||||||| |||||| ||||||||||    
T  16401214 aataaaccgaaaatcgaacattcaaaatttaaactacataataaataaattcgatcattaaatatttaatgtgacactttacgctttctaagtgacttga 16401115  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  16401114 aatcatcaataattgactcggaactaatacatgcactaatttccctttcaatat 16401061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 342 - 494
Target Start/End: Original strand, 37465931 - 37466083
Alignment:
Q  342 tcaaaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgac 441  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||  ||||| |||||||    
T  37465931 tcaaaataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcgatcattgcatacctaaagacacactttaggctttccgagtgac 37466030  T
Q  442 ttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttc 494  Q
    ||||||||||||| |||| | || ||| ||||| || ||||||| ||||||||    
T  37466031 ttgaaatcatcaaaaattgattcagaactaatacattcactaatatccctttc 37466083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 55405184 - 55405031
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||||||||||  |||||||||||||||||| | ||||||| || || ||||| |||| |||  |||||   || ||||| ||||| |||||||||||    
T  55405184 aataaaccaaaaattgatcattcaaaatttaaagtgcataatacatcaaatcgataattaaatatttaaagtgacattttacgctttccgagtgacttga 55405085  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  55405084 aatcatcaataattgactcggaactaatagatgcactaatttccctttcaatat 55405031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 44504908 - 44504755
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||| |||||| | |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||  ||||||  |||| ||||||  |||    
T  44504908 aataaatcaaaaatcaatcatttaaaatttaaactacataatatataaagtcgatgattacatacctaaagatgttctttacgttttccgagtgatctga 44504809  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| | |||||| ||||| ||||  |||||| |||||||||||    
T  44504808 aatcatcaataattgattcggaactaatacatgctttaattttcctttcaatat 44504755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 43335352 - 43335495
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||| | ||| |||||||||      
T  43335352 aatataccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattaaatacataaagtgacactttactccttccgagtgactt-- 43335449  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
            | |||| |||||||| ||||| ||||||||||||||||||||||||    
T  43335450 --------aaaattgactcggaactaatacatgcactaatttccctttcaatat 43335495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 38115969 - 38115912
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaa 351  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  38115969 cagtggcggagcccgacaaaaaagtttggggtggccggcatcccgccatcaaaataaa 38115912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 29947716 - 29947658
Alignment:
Q  294 cagtggcggagtccgacaaaaaa-gtttggggtggccgccatcccgccatcaaaataaa 351  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||    
T  29947716 cagtggcggagccagacaaaaaaagtttggggtggccgccatcccgccatcaaaataaa 29947658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 53816242 - 53816300
Alignment:
Q  436 agtgacttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttc 494  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||    
T  53816242 agtgacttgaaatcatcaataattgactcggaactaatacatgcactaattttcctttc 53816300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 7114410 - 7114351
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcatta 405  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  7114410 aataaactaaaaatcgatcattcaaaatttaaattacataatataaaaagttgatcatta 7114351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 53816173 - 53816243
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaag 416  Q
    ||||||||||||| |||||||||||||  | || || ||||||||||||||||||||| | |||| |||||    
T  53816173 aataaaccaaaaagcgatcattcaaaaagtcaattatataatatataaagtcgatcatcaaatacttaaag 53816243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 44505009 - 44504952
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaa 351  Q
    ||||||||||| | || ||||||||||||  |||| ||||||||||||||||||||||    
T  44505009 cagtggcggagccagataaaaaagtttggaatggctgccatcccgccatcaaaataaa 44504952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 20038760 - 20038697
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||| | ||||||||| ||||||||||||| |   ||||||||||||||||| ||||    
T  20038760 cagtggcggagccagacaaaaaaatttggggtggccggctggccgccatcaaaataaactaaaa 20038697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 499
Target Start/End: Complemental strand, 27599305 - 27599242
Alignment:
Q  436 agtgacttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||| ||||  | ||||||| |||||||| ||||| |||||||||| |||||||||||||    
T  27599305 agtgacttaaaattgttaataattgactcggaactaatacatgcactaatatccctttcaatat 27599242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 37465855 - 37465918
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||| | |||| ||| |||||||||||||| ||| ||||||||||| ||||| ||||    
T  37465855 cagtggcggagccagacataaatgtttggggtggccgtcatgccgccatcaaagtaaactaaaa 37465918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 42883686 - 42883745
Alignment:
Q  440 acttgaaatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||||| |||||||| |||||| ||| |||||  |||||||||||||||||| ||||    
T  42883686 acttgaaattatcaataactaactcagaactaatatttgcactaatttccctttcgatat 42883745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 24535146 - 24535184
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacat 384  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  24535146 aatacaccaaaaatcgatcattcaaaatttaaactacat 24535184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 9816500 - 9816459
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatc 335  Q
    ||||||||||| | ||||||||||||||||||| ||||||||    
T  9816500 cagtggcggagccagacaaaaaagtttggggtgaccgccatc 9816459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 33753049 - 33753008
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatc 335  Q
    ||||||| ||| | ||||||||||||||||||||||||||||    
T  33753049 cagtggcagagccagacaaaaaagtttggggtggccgccatc 33753008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 27133183 - 27133030
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||| |||||||  |||  |||||||||||    
T  27133183 aataaatcaaaaaccgatcattcaaaatttaaactacataatatataaagtcggttattacatacctaaaaatgtactttacgtttttcgagtgacttga 27133084  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| | ||| || ||| | |||| |||||||||||||||||||    
T  27133083 aatcatcaataattgattcgaaactaaaacatgcgctaatttccctttcaatat 27133030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 346 - 497
Target Start/End: Original strand, 47074432 - 47074582
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |  || ||||| ||||||   ||||||||    
T  47074432 aataaaccaaaaattgatcattcaaaatttaaactacataatatataaagtcgatcattaaatacttaaata-acattttacgctttctagatgacttga 47074530  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaat 497  Q
    |||||||||||||| |||||||| ||||| || ||||||||| |||||||||    
T  47074531 aatcatcaataattgactcggaactaatacattcactaattttcctttcaat 47074582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 459
Target Start/End: Complemental strand, 181618 - 181505
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||   ||||||||  |||| |||||||||||    
T  181618 aataaaccaaaaatcgatcattcaaaatttaaactacataatatataaaattgatcattacatacttaaagcgacactttacgttttccgagtgacttga 181519  T
Q  446 aatcatcaataatt 459  Q
    |||||| |||||||    
T  181518 aatcattaataatt 181505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 3288116 - 3288269
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||||||||||   |||||| ||||||||||| |||| |||||||||||||||||||| |||| |||||   |  || || ||||| |||||||||||    
T  3288116 aataaaccaaaaattaatcatttaaaatttaaaccacatgatatataaagtcgatcattaaatacttaaagtgacgtttgacgctttccgagtgacttga 3288215  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||| |||||| |||||||| ||||| ||||||||||||| ||||||||||    
T  3288216 aatcatccataattgactcggaactaatacatgcactaatttcgctttcaatat 3288269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 384 - 499
Target Start/End: Original strand, 51065032 - 51065147
Alignment:
Q  384 taatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatcaataattaactcggaattaatagatgcacta 483  Q
    |||||||||||||||||||||| |||| |||||   |||||||| ||||  ||||||||| ||||||||||||||| |||||||| ||||| ||||||||    
T  51065032 taatatataaagtcgatcattaaatacttaaagtgacactttacgcttttcgagtgacttaaaatcatcaataattgactcggaactaatacatgcacta 51065131  T
Q  484 atttccctttcaatat 499  Q
    ||||||||||||||||    
T  51065132 atttccctttcaatat 51065147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 380 - 496
Target Start/End: Original strand, 11052520 - 11052636
Alignment:
Q  380 tacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatcaataattaactcggaattaatagatgc 479  Q
    |||||||||||||||||||||||||| |||| |||||   || ||||  ||||||||||||||||||||||||||||||   |||| || ||||| ||||    
T  11052520 tacataatatataaagtcgatcattaaatacttaaagtgacattttatgctttctgagtgacttgaaatcatcaataatagtctcgaaactaatacatgc 11052619  T
Q  480 actaatttccctttcaa 496  Q
    |||||||| ||||||||    
T  11052620 actaattttcctttcaa 11052636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 4692796 - 4692645
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    |||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||| |||| |||| |  || ||||| ||||  |  ||| || |    
T  4692796 aataaatcaaaaatcgatcattcaaa-tgtaaactacataatatataaagtcgatcattaaatacttaaata-acattttacgcttttcggatgatttaa 4692699  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| | |||||| ||||| || || |||||| |||||||||||    
T  4692698 aatcatcaataattgattcggaactaatacattcattaattttcctttcaatat 4692645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 20727862 - 20727809
Alignment:
Q  298 ggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaaaataaa 351  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  20727862 ggcggagccagacaaaaaagtttggggtggccgccatcccgccatcaaaataaa 20727809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 10800942 - 10800990
Alignment:
Q  309 acaaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||    
T  10800942 acaaaaaagtttggggtggcgggcatcccgccaacaaaataaaccaaaa 10800990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 16763918 - 16763966
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaa 394  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  16763918 aataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 16763966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 10801031 - 10801069
Alignment:
Q  356 aaaccgatcattcaaaatttaaactacataatatataaa 394  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  10801031 aaaccgatcgttcaaaatttaaactacataatatataaa 10801069  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 3288021 - 3288062
Alignment:
Q  294 cagtggcggagtccgacaaaaaagtttggggtggccgccatc 335  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  3288021 cagtggcggagccagacaaaaaagtttggggtggccgccatc 3288062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 402
Target Start/End: Complemental strand, 8920085 - 8920029
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatca 402  Q
    |||||||| |||  ||||||||||||||||||| ||||||||| |||||||| ||||    
T  8920085 aataaaccgaaagtcgatcattcaaaatttaaattacataatacataaagtcaatca 8920029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 27133268 - 27133221
Alignment:
Q  310 caaaaaagtttggggtggccgccatcccgccatcaaaataaaccaaaa 357  Q
    ||||||||||||||| |||||||||| |||||| ||||||||| ||||    
T  27133268 caaaaaagtttggggcggccgccatctcgccataaaaataaactaaaa 27133221  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 51064716 - 51064755
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacata 385  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  51064716 aataaatcaaaaatcgatcattcaaaatttaaactacata 51064755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 334
Target Start/End: Complemental strand, 51286731 - 51286692
Alignment:
Q  295 agtggcggagtccgacaaaaaagtttggggtggccgccat 334  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  51286731 agtggcggagtcagacaaaaaagtttgggatggccgccat 51286692  T

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Target: scaffold0024 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 11829 - 11982
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||   |||||||| ||||| |||| ||||||    
T  11829 aataaaccaaaaaacgatcattcaaaatttaaactacataatatataaaatcgataattagatacttaaagtgacactttacgctttccgagtaacttga 11928  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    ||||||| |||||| |||  ||| | ||| |||||||||||||||||| |||||    
T  11929 aatcatcgataattgacttagaacttatacatgcactaatttcccttttaatat 11982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 41318271 - 41318118
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||| || ||||||||| |||  |||||   ||||||||  |||  |||||||||||    
T  41318271 aataaacaaaaaatcgatcatttaaaatttaaactacataatatatagagccgatcattaaatatttaaagtgacactttacgattttcgagtgacttga 41318172  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| |||||||| |||||  |||||||||||||||||||||||    
T  41318171 aatcatcaataattgactcggaagtaatatgtgcactaatttccctttcaatat 41318118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 346 - 448
Target Start/End: Original strand, 5885371 - 5885473
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||  ||||||||| |    
T  5885371 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcgatcattaaatacataaagttacactttactcttttcgagtgacttaa 5885470  T
Q  446 aat 448  Q
    |||    
T  5885471 aat 5885473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 5088836 - 5088683
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| ||||||||||||||||||| | ||||||| || || ||||| |||| |||  |||||   || ||||| |||| ||||||||||||    
T  5088836 aataaaccaaaaatcgatcattcaaaatttaaagtgcataatacatcaaatcgataattaaatatttaaagtgacattttacgctttttgagtgacttga 5088737  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaatttccctttcaatat 499  Q
    |||||||||||||| ||| | || ||||||||||||||||||| ||||||||||    
T  5088736 aatcatcaataattgacttgaaactaatagatgcactaatttctctttcaatat 5088683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 346 - 487
Target Start/End: Original strand, 17738024 - 17738163
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttga 445  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||| |||||||||| |||| |||| |||||  ||||||||||||||  |  | ||||||    
T  17738024 aataaaccaaaaaacgatcattcaaaatttaaaataca-aatat-taaagtcgattattaaatacttaaagtggcactttacacttttcgtataacttga 17738121  T
Q  446 aatcatcaataattaactcggaattaatagatgcactaattt 487  Q
    ||||||||| |||| |||||||| ||||| ||||||||||||    
T  17738122 aatcatcaacaattgactcggaactaatacatgcactaattt 17738163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 370 - 499
Target Start/End: Original strand, 9844782 - 9844910
Alignment:
Q  370 aaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtgacttgaaatcatcaataattaactcggaat 469  Q
    ||||||||||||||||||||| |||||||||||||| |||  |||||   ||||||| | ||||  |||||||||||||||||||||||| ||||| ||     
T  9844782 aaatttaaactacataatata-aaagtcgatcattaaatatttaaagtgacactttatattttccaagtgacttgaaatcatcaataattgactcgaaac 9844880  T
Q  470 taatagatgcactaatttccctttcaatat 499  Q
    ||||| ||||| |||||| |||||||||||    
T  9844881 taatacatgcagtaattttcctttcaatat 9844910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 41318360 - 41318322
Alignment:
Q  297 tggcggagtccgacaaaaaagtttggggtggccgccatc 335  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  41318360 tggcggagtcagacaaaaaagtttggggtggccgccatc 41318322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 32340116 - 32340064
Alignment:
Q  293 acagtggcggagtccgacaaaaaagtttggggtggccgccatcccgccatcaa 345  Q
    ||||||| | |||| ||||||||||||| ||||||||| ||||||||||||||    
T  32340116 acagtggtgaagtcagacaaaaaagtttagggtggccgtcatcccgccatcaa 32340064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 440
Target Start/End: Original strand, 7764 - 7851
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataaagatgcactttacactttctgagtga 440  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||||        | |||||| || ||||||||||||||||||||||||||    
T  7764 aataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa-------ctaacatacctatagatgcactttacactttctgagtga 7851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 3591 - 3543
Alignment:
Q  346 aataaaccaaaaaccgatcattcaaaatttaaactacataatatataaa 394  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  3591 aataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 3543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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