View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15204_low_10 (Length: 476)

Name: NF15204_low_10
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15204_low_10
NF15204_low_10
[»] chr4 (1 HSPs)
chr4 (18-56)||(12246565-12246603)
[»] chr2 (4 HSPs)
chr2 (18-56)||(25196670-25196708)
chr2 (17-56)||(8445462-8445501)
chr2 (18-56)||(17891790-17891828)
chr2 (18-59)||(21905785-21905826)
[»] chr3 (1 HSPs)
chr3 (17-57)||(19573575-19573615)
[»] chr7 (3 HSPs)
chr7 (18-56)||(6018417-6018455)
chr7 (18-56)||(19201517-19201555)
chr7 (19-56)||(7399387-7399424)
[»] chr5 (2 HSPs)
chr5 (18-56)||(24142466-24142504)
chr5 (17-57)||(28280341-28280381)
[»] chr1 (3 HSPs)
chr1 (18-56)||(15542308-15542346)
chr1 (19-57)||(21333070-21333108)
chr1 (18-56)||(27912123-27912161)


Alignment Details
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 12246603 - 12246565
Alignment:
Q  18 aaaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  12246603 aaaaacatgttaaaaataacataagatgacctgtcatca 12246565  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 25196670 - 25196708
Alignment:
Q  18 aaaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  25196670 aaaaacatgttaagaataacataagatgacatgtcatca 25196708  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 8445501 - 8445462
Alignment:
Q  17 aaaaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  8445501 aaaaaatatgttaagaataacataagatgacatgtcatca 8445462  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 17891790 - 17891828
Alignment:
Q  18 aaaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  17891790 aaaaacatgttaagaataacgtaagatgacatgtcatca 17891828  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 21905785 - 21905826
Alignment:
Q  18 aaaaacatgttaaaaataacataagatgacatgtcatcaaat 59  Q
    ||||||||| ||| |||||||||||||||| |||||||||||    
T  21905785 aaaaacatgctaagaataacataagatgacctgtcatcaaat 21905826  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 19573615 - 19573575
Alignment:
Q  17 aaaaaacatgttaaaaataacataagatgacatgtcatcaa 57  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  19573615 aaaaaacatgctaaaaataacataagatgacctgtcatcaa 19573575  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 6018417 - 6018455
Alignment:
Q  18 aaaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  6018417 aaaaacatgctaaaaataacataagatgacatatcatca 6018455  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 19201517 - 19201555
Alignment:
Q  18 aaaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  19201517 aaaaacatgttaagaataacataagatgacctgtcatca 19201555  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 7399387 - 7399424
Alignment:
Q  19 aaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  7399387 aaaacatgttaagaataacgtaagatgacatgtcatca 7399424  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 24142466 - 24142504
Alignment:
Q  18 aaaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  24142466 aaaaacatgctaagaataacataagatgacatgtcatca 24142504  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 28280341 - 28280381
Alignment:
Q  17 aaaaaacatgttaaaaataacataagatgacatgtcatcaa 57  Q
    |||||| ||| |||||||||| |||||||||||||||||||    
T  28280341 aaaaaatatgctaaaaataacgtaagatgacatgtcatcaa 28280381  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 15542346 - 15542308
Alignment:
Q  18 aaaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  15542346 aaaaacatgttaagaataacgtaagatgacatgtcatca 15542308  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 21333108 - 21333070
Alignment:
Q  19 aaaacatgttaaaaataacataagatgacatgtcatcaa 57  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  21333108 aaaacatattaagaataacataagatgacatgtcatcaa 21333070  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 27912123 - 27912161
Alignment:
Q  18 aaaaacatgttaaaaataacataagatgacatgtcatca 56  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  27912123 aaaaacatgttaagaataacgtaagatgacatgtcatca 27912161  T

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