View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15204_low_11 (Length: 473)
Name: NF15204_low_11
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Complemental strand, 41277161 - 41276713
Alignment:
| Q |
8 |
cgaagaatatttaatatattacattaaattttaaaaatatacagttacatcattattggttcagctgcagttaagcaattaaaaaacttcatgggttaaa |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41277161 |
cgaataatatttaatatattacattaaattttaaaaatatacagttacatcattattggttcagctgcagttaagcaattaaaaaacttcatgggttaaa |
41277062 |
T |
|
| Q |
108 |
agttaaacgatcggttctattaatgaagattgtgattctgaacttgacgtagtaacgtgtataatcataatgtttagaatttgagcttttgtccactctc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41277061 |
agttaaacgatcggttctattaatgaagattgtgattctgaacttcacgtagtaacgtgtataatcataatgtttagaatttgagcttttgtccactctc |
41276962 |
T |
|
| Q |
208 |
gtctctcatgacattggaatggaaatagagagtgtctttgttaacgatgacacaaatacatgcttatttgagaaccatgtctttgaagaatttataccac |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41276961 |
gtctctcatgatattggaatggaaatagagagtgtctttgttaacgatgacacaaatacatgcttatttgagaaccatgtccttgaagaatttataccac |
41276862 |
T |
|
| Q |
308 |
caaatcaatctactattgataacttctgttttactaccgaacctggtggtaattgcaagttgttcttggatttggaaacttaagctccctgaatatattc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41276861 |
caaatcaatctactattgataacttctgttttactaccgaacctggtggtaattgcaagttgttcttggatttggaaacttaagctccctgaatatattc |
41276762 |
T |
|
| Q |
408 |
gccacttttcctctatcacaatatatggaaagttgcttaccaactatat |
456 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41276761 |
gccacttttcctccatcacaatatatggaaagttgcttaccaactatat |
41276713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University