View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_low_14 (Length: 434)
Name: NF15204_low_14
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 48923566 - 48923980
Alignment:
| Q |
10 |
ggtagataattctccagtaccacccattctctatgctgatccttttgttcacacaaatcttgaagagcttgcagacaatgtaatactccaacttcatctc |
109 |
Q |
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| T |
48923566 |
ggtatataattctccagtaccacccattctctatgctgatccttttgttcacacaaatcttgaagagcttgcagacaatgtaatactccaacttcatctc |
48923665 |
T |
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| Q |
110 |
cagactcgattttcttctctctcattgaagcaattgtgatcattgcatttctatctttccattcttctattgattgtttcaaggttttgttaggtctcaa |
209 |
Q |
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| T |
48923666 |
cagactggattttcttctctctcattgaagcaattgtgatcattgcatttctatctttccattcttctattgattgtttcaaggttttgttaggtctcaa |
48923765 |
T |
|
| Q |
210 |
aattaacgtgtctaaagtaatgaaagtcagaggacacaatttgtttccttctgcaaaccacttttcaattgcacttctctcaaatgtttgccctgatgaa |
309 |
Q |
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| T |
48923766 |
aatcaacgtgtctaaagtaatgaaagtcagaggacacaatttgtttccttctgcaaaccactcttcaattgcacttctctcaaatgtttgccctgatgaa |
48923865 |
T |
|
| Q |
310 |
gtttccacagggtcaaccataacatcacccgtaatggggcaataaaaggactgtaaaggctccaacggttgattacccaaagaatttcgtttggcgaggt |
409 |
Q |
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| T |
48923866 |
gtttccacagggtcaaccataacatcacccgtaatggggcaataaaaggactgtaaaggctccaacggttgattacccaaagaatttcgtttggcgaggt |
48923965 |
T |
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| Q |
410 |
acttgagttcctttt |
424 |
Q |
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| T |
48923966 |
acttgagttcctttt |
48923980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 138 - 374
Target Start/End: Complemental strand, 9534417 - 9534181
Alignment:
| Q |
138 |
agcaattgtgatcattgcatttctatctttccattcttctattgattgtttcaaggttttgttaggtctcaaaattaacgtgtctaaagtaatgaaagtc |
237 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||| ||| || ||| |
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| T |
9534417 |
agcaattgtaatcattgtatttctatctttccattcttctatggattgtttcaatgttttgttaggtctcaaaaccgacgtatctaaaggaatcaatgtc |
9534318 |
T |
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| Q |
238 |
agaggacacaatttgtttccttctgcaaaccacttttcaattgcacttctctcaaatgtttgccctgatgaagtttccacagggtcaaccataacatcac |
337 |
Q |
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| T |
9534317 |
aaaggacacaacttgtttccttcttcaaaccacttttctattgcacttctctcaaatgtttgatctgatgaagtttcaacaggttccaccataacatcat |
9534218 |
T |
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| Q |
338 |
ccgtaatggggcaataaaaggactgtaaaggctccaa |
374 |
Q |
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| T |
9534217 |
gtgtgatagaacaataaaatgactgtaaaggctccaa |
9534181 |
T |
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