View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_low_18 (Length: 351)
Name: NF15204_low_18
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 11362842 - 11362497
Alignment:
| Q |
1 |
cctcagatagacagttgattcgagtcaagttctacagaaaatatcaataataacaacagtatgaaagctatgtaagtgccaagtaattccacatctatag |
100 |
Q |
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| T |
11362842 |
cctcagatagatcgttgattcgagtcaagttctacagaaaatatcaataataacaacattatgaaagctatttaagtgccaagtaattccacatctatag |
11362743 |
T |
|
| Q |
101 |
atatccaaatcagagacatgtttaaagttaaactaaaccttctttgcttgtaacaataagctattgcaggtaaagatccctgcatccagaagcttcttca |
200 |
Q |
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| T |
11362742 |
atatccaaatcagagacgtgtttaaagttaaactaaaccttctttgcttgtaacaataagctattgcaggtaaagatccctgcatccagaagcttcttca |
11362643 |
T |
|
| Q |
201 |
catcgtcggcgtcaatatcttgagaaatcactgtgaagatgcacagtgttgttagtaggagacaaaacatgcttgttcgatgaaacatacaagtttaacc |
300 |
Q |
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| T |
11362642 |
catcgtcggcgtcaatatcttgagaaatcactgtgaagatgcacagtgttgttagtagtagacaaaacatgattgttcaatgaaacatacaagtttaacc |
11362543 |
T |
|
| Q |
301 |
agccaaaattgaaaatgaaaaaccaagagaacgaaagcatgtacat |
346 |
Q |
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| T |
11362542 |
agccaaaattgaaaatgaaaaaccgagagaacgaaagcatgtacat |
11362497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 18554767 - 18554686
Alignment:
| Q |
158 |
aagctattgcaggtaaagatccctgcatccagaagcttcttcacatcgtcggcgtcaatatcttgagaaatcactgtgaaga |
239 |
Q |
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| T |
18554767 |
aagccattgcagataaagatccctgcgtcctgaagcttctttacatctccggcattaattccttgaaaaatcactgcgaaga |
18554686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 46400794 - 46400719
Alignment:
| Q |
158 |
aagctattgcaggtaaagatccctgcatccagaagcttcttcacatcgtcggcgtcaatatcttgagaaatcactg |
233 |
Q |
| |
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|||| ||||||||||||||||||||| ||| |||||||||||||||| |||| | ||| ||||||||||||||| |
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| T |
46400794 |
aagccattgcaggtaaagatccctgcgtcctgaagcttcttcacatctccggcattaattccttgagaaatcactg |
46400719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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