View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_low_19 (Length: 334)
Name: NF15204_low_19
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 10713076 - 10712790
Alignment:
| Q |
1 |
tgaatctacagagaatcgaactgggtcgttgagcaatcataaatgaacagacagatcgctgatgttaaaacaa-ggaacaaagatatgttaaaacaaagg |
99 |
Q |
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| T |
10713076 |
tgaatctacagagaatagaactgggttgt---gtaatcataaatgaaaagacatatacctgatgttaaaacaaaggaacaaagata--------caaagg |
10712988 |
T |
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| Q |
100 |
aatatagatgttaaaacaaacttatggcagtatgcatgtctatgttgaatttcaaagcctaaatctccaagagataaaatattagatctacgttaaaa-- |
197 |
Q |
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|| | ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
10712987 |
aacaaagatgttaaaacaaacttatggcagcatgcatatctatgttgaatttcaaagcctaaatctccaagagacaaaatattagatctttgttaaaaaa |
10712888 |
T |
|
| Q |
198 |
------agctgcggcaattg-attttggaatttgaaaccctaaatccaagagacaaattttatgtatttatagcaaa-ttagagaagcaattggtggg |
287 |
Q |
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| T |
10712887 |
acaagcagctgcggcaattgaattttggaatttaaaaccctaaatccaagagacaaattttatgtatttatagcaaatttagagaagtagttggtggg |
10712790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 198 - 334
Target Start/End: Original strand, 10713261 - 10713391
Alignment:
| Q |
198 |
agctgcggcaattgatttt-ggaatttgaaaccctaaatccaagagacaaattttatgtatttatagcaaattagagaagcaattggtgggttatctgtt |
296 |
Q |
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| T |
10713261 |
agctgcggcaattgatttttggaatttgaaaccctaaatccaagagataaattttatatatttatagcaaattagagaagcaattggtggtttat----- |
10713355 |
T |
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| Q |
297 |
tgctgtcatgtgagaggtagctctcgtgtccatgtacc |
334 |
Q |
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| T |
10713356 |
--ctgtcatgtgagaggtagctcttgtgtccatgtacc |
10713391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 9423076 - 9423144
Alignment:
| Q |
219 |
aatttgaaaccctaaatccaagagacaaattttatgtatttatagcaaatt-agagaagcaattggtggg |
287 |
Q |
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| T |
9423076 |
aatttgaaaccctaaat-caagagacagaatttttgtatttataggaaattgagagaaacaattggtggg |
9423144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 9448644 - 9448712
Alignment:
| Q |
220 |
atttgaaaccctaaatccaa-gagacaaattttatgtatttatagcaaattagagaagcaattggtggg |
287 |
Q |
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| T |
9448644 |
atttgaaaccctaattcctatgagacacaatttatgtatttatagcaaatttaagaaagaattggtggg |
9448712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 29277818 - 29277885
Alignment:
| Q |
220 |
atttgaaaccctaaatccaagagacaaattttatgtatttatagcaaattagagaagcaattggtggg |
287 |
Q |
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| T |
29277818 |
atttgaaaccctaaatctatgaaacacaatttatgtatttatagcaaatttaagaaagaattggtggg |
29277885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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