View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_low_22 (Length: 306)
Name: NF15204_low_22
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_22 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 47381138 - 47381425
Alignment:
| Q |
18 |
actttggactggatatgaaatgtgaagactgaagacatatatatggttgtgcaaatgttgaacttgtcacaacttccatctcttaggtaaatagatttaa |
117 |
Q |
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| T |
47381138 |
actttggactggctatgaaatgtgaagactgaaga-atatatatggttgtgcatatgctgaatttgccacaactttcatctcttaagtaaataaatttaa |
47381236 |
T |
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| Q |
118 |
atacttgtgcagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagtgc |
217 |
Q |
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| T |
47381237 |
atacttatgcagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaagatccagctttggagaggagattccagccagttaaagtgc |
47381336 |
T |
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| Q |
218 |
cggagccaactgtgactgaaacaatacaaatactgaaaggggttagacggtgcatagagattcaccacaagctctattatgccgatgat |
306 |
Q |
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| T |
47381337 |
cagagccaactgtgagtgaaaccatacaaatattgaaagggcttagagagcgctatgagattcaccacaagctccgttataccgatgat |
47381425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 47816604 - 47816875
Alignment:
| Q |
18 |
actttggactggatatgaaatgtgaagactgaagacatatatatggttgtgcaaatgttgaacttgtcacaacttccatctcttaggtaaatagatttaa |
117 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||| ||| | ||| | | |||| |||||||||||||||||| ||||||| |||||| |
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| T |
47816604 |
actttggattggctatgaaatgtgaagactgaagacatatatatggctgt--atatgctcagcttgccacaacttccatctcttaagtaaataaatttaa |
47816701 |
T |
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| Q |
118 |
atacttgtgcagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagtgc |
217 |
Q |
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| T |
47816702 |
atacttatgcagtgtatatgagccacaacactagatgaatacaggaagcacattgaagaagatccagctttggagaggaaattccagccagttaaagtgc |
47816801 |
T |
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| Q |
218 |
cggagccaactgtgactgaaacaatacaaatactgaaaggggttagacggtgcatagagattcaccacaagctc |
291 |
Q |
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| T |
47816802 |
tagagccaactgtgagtgaaaccatacaaatattgaaagggcttagagagcgctatgagattcaccacaagctc |
47816875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 45113329 - 45113461
Alignment:
| Q |
125 |
tgcagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagtgccggagcc |
224 |
Q |
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| T |
45113329 |
tgcagtgtattggagccaccacattggatgaatacaggaagcacatcgaaaaagacccagctttggagagacgattccagccagttaaagtaccagaacc |
45113428 |
T |
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| Q |
225 |
aactgtgactgaaacaatacaaatactgaaagg |
257 |
Q |
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| T |
45113429 |
aactgttgatgaaaccatacaaatactgaaagg |
45113461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 116 - 291
Target Start/End: Original strand, 40243945 - 40244120
Alignment:
| Q |
116 |
aaatacttgtgcagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagt |
215 |
Q |
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| T |
40243945 |
aaatacttatgcagtgtataggagccacaactctagatgaatataggaagcacattgaaaaagatccagctttggagaggcgattccaacctgttaaagt |
40244044 |
T |
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| Q |
216 |
gccggagccaactgtgactgaaacaatacaaatactgaaaggggttagacggtgcatagagattcaccacaagctc |
291 |
Q |
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| T |
40244045 |
gccagagccaactgttcctgaaaccatacaaatactgaaaggacttagagagcgctatgagattcaccacaagctc |
40244120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 34055604 - 34055504
Alignment:
| Q |
133 |
ataggagccacaacactag-atgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagtgccggagccaactgtg |
231 |
Q |
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| T |
34055604 |
ataggagccacaacactaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagtgaaagtgccaaagccaactgtg |
34055505 |
T |
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| Q |
232 |
a |
232 |
Q |
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| T |
34055504 |
a |
34055504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 34055694 - 34055601
Alignment:
| Q |
18 |
actttggactggatatgaaatgtgaagactgaagacatatatatggttgtgcaaatgttgaacttgtcacaacttccatctcttaggtaaatag |
111 |
Q |
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| T |
34055694 |
actttggactggctatgaagtgcgaagaacgaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaatag |
34055601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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