View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15204_low_33 (Length: 235)

Name: NF15204_low_33
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15204_low_33
NF15204_low_33
[»] chr4 (9 HSPs)
chr4 (20-219)||(4011964-4012164)
chr4 (23-103)||(4003488-4003568)
chr4 (23-98)||(3952844-3952919)
chr4 (23-110)||(3812179-3812266)
chr4 (23-110)||(3821752-3821839)
chr4 (23-110)||(3988377-3988464)
chr4 (141-195)||(4026848-4026902)
chr4 (19-88)||(4026720-4026789)
chr4 (23-99)||(4220990-4221066)
[»] chr5 (1 HSPs)
chr5 (19-110)||(13399325-13399416)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 4011964 - 4012164
Alignment:
Q  20 tcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaacnnnnnnnc 119  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||       |    
T  4011964 tcacctctaaagcttacaaaaacatcatcctttgattggggagaaatgtttgacggtgccttttctgctacagccttcaattcaataagaacgaaaaaac 4012063  T
Q  120 ttaggttcttcataaaaacttagatctctataacattaacaaaatacaacaacaatt-aaaaaatgttactacttaattatcaaaaagtgatgctattca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||||||||||| |||||||    
T  4012064 ttaggttcttcataaaaacttagatctctataacattaacaaaatacaacaacaattaaaaaaaatttactacttaatcatcaaaaagtgattctattca 4012163  T
Q  219 t 219  Q
    |    
T  4012164 t 4012164  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 4003488 - 4003568
Alignment:
Q  23 cccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaattta 103  Q
    |||||||||||||||||| ||||||||||| |||||||||||  |||||||  |||||||||||||||| |||||||||||    
T  4003488 cccctaaagcttacaaaaacatcatactttaattggggagcatcgtttgacattgccttttctgctacacccttcaattta 4003568  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 3952919 - 3952844
Alignment:
Q  23 cccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttca 98  Q
    |||||||||||||||||| ||||||||||||||| ||||| | ||||||||  || ||||||||||||| ||||||    
T  3952919 cccctaaagcttacaaaaacatcatactttgattcgggagaattgtttgacattgtcttttctgctacacccttca 3952844  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 3812179 - 3812266
Alignment:
Q  23 cccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 110  Q
    |||||||||||||||||| |||||||||||||||| |||| | |||||| |  | || ||||||||||| ||||||| ||| ||||||    
T  3812179 cccctaaagcttacaaaaacatcatactttgattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaa 3812266  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 3821752 - 3821839
Alignment:
Q  23 cccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 110  Q
    |||||||||||||||||| ||||||||||| |||| |||| | |||||| |  | || ||||||||||| ||||||| ||| ||||||    
T  3821752 cccctaaagcttacaaaaacatcatactttaattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaa 3821839  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 3988377 - 3988464
Alignment:
Q  23 cccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||  || |||||  || ||||||| ||||| ||||||| ||| ||||||    
T  3988377 cccctaaagctcacaaaaacatcatattttgattggggagcgttggttgacattgacttttctcctacacccttcaacttattaacaa 3988464  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 4026848 - 4026902
Alignment:
Q  141 agatctctataacattaacaaaatacaacaacaattaaaaaatgttactacttaa 195  Q
    |||| |||||||||||||||||||||| ||| | |||| ||||||||||||||||    
T  4026848 agatgtctataacattaacaaaatacagcaaaatttaataaatgttactacttaa 4026902  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 4026720 - 4026789
Alignment:
Q  19 ctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgct 88  Q
    ||||||||||||| |||| ||| |||||||||||| ||| |||||| |||| |||  |||||||||||||    
T  4026720 ctcacccctaaagtttacgaaaacatcatactttggttgaggagcattgttagacattgccttttctgct 4026789  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 4220990 - 4221066
Alignment:
Q  23 cccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaa 99  Q
    |||||||||||||||||| ||||| |||||||||  |||| | ||||||||  ||| ||||||||| || |||||||    
T  4220990 cccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttcaa 4221066  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 13399325 - 13399416
Alignment:
Q  19 ctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 110  Q
    |||||||||||||||||||||| |||| ||  |||||||||||||| |  |||||  ||| ||||| |||| | ||||||| ||| ||||||    
T  13399325 ctcacccctaaagcttacaaaaacatcgtatattgattggggagcatttcttgacactgctttttcagctatacccttcaacttattaacaa 13399416  T

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