View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_low_34 (Length: 232)
Name: NF15204_low_34
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 39553646 - 39553818
Alignment:
| Q |
19 |
gcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgcttggaactaccaccattattgtttgagttggctagtgactgcattt |
118 |
Q |
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| T |
39553646 |
gcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgcttggaactaccaccattattgtttgagttggctagtgactgcatgt |
39553745 |
T |
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| Q |
119 |
tgttgagttccttgcttgttacatagtatatgcgacttattatcgggtcggttttaatatcagattcaggttc |
191 |
Q |
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| T |
39553746 |
tgttgagttctttgcttgttacatagtatatgcgacttattattgggtcggttttaatatcagattcaggttc |
39553818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 39543627 - 39543794
Alignment:
| Q |
19 |
gcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgcttggaactaccaccattattgtttgagttggctagtgactgcattt |
118 |
Q |
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| T |
39543627 |
gcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgtttggaactaccaccattattgtttgagttggcaagtgactgcatgt |
39543726 |
T |
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| Q |
119 |
tgttgagttccttgcttgttacatagtatatgcgacttattatcgggtcggttttaatatcagattca |
186 |
Q |
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| T |
39543727 |
tgttgagttctttgcttgttacataatatatgcgacttattattgggtcagttttttgatcagattca |
39543794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 39586759 - 39586910
Alignment:
| Q |
25 |
gcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgcttggaactaccaccattattgtttgagttggctagtgactgcattttgttga |
124 |
Q |
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| T |
39586759 |
gcaaccattttccacaagaaagcagaaaacgattcaagttttgagcgcttaacgcttccactattatt---tgtgttggctagtaactgcatggtgttga |
39586855 |
T |
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| Q |
125 |
gttccttgcttgttacatagtatatgcgacttattatcgggtcggttttaatatc |
179 |
Q |
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| T |
39586856 |
gttcttcgcttgttacgtagtacatgcgacttattagtgggttggttttaatatc |
39586910 |
T |
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