View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_low_36 (Length: 228)
Name: NF15204_low_36
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 45394198 - 45394387
Alignment:
| Q |
20 |
caacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgc |
119 |
Q |
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| T |
45394198 |
caacgttagtgtcgggttgcccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgc |
45394297 |
T |
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| Q |
120 |
ttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaatcttctggcgccc |
209 |
Q |
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| T |
45394298 |
ttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaatcttctggcgccc |
45394387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 52740817 - 52740991
Alignment:
| Q |
28 |
gtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctga |
127 |
Q |
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| T |
52740817 |
gtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctga |
52740916 |
T |
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| Q |
128 |
ataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaatcttct |
202 |
Q |
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| T |
52740917 |
ataaaccttgtcttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatcttct |
52740991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 13539456 - 13539603
Alignment:
| Q |
64 |
ggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtt |
163 |
Q |
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| T |
13539456 |
ggggaaaacaccaccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtc |
13539555 |
T |
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| Q |
164 |
tgttggaatctttctcaaccttcttgatctcaatcttctggcgcccta |
211 |
Q |
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| T |
13539556 |
tgttcgatgctttgtcaatcttcttgatctcgatcttcttgtgcccta |
13539603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 35782138 - 35781972
Alignment:
| Q |
34 |
ggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaac |
133 |
Q |
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| T |
35782138 |
ggttcaccgaaacagtgtagtttgccagcaggagaaaacacgatgatggctgcatgaacatcacataaagtgcaaagttcactcgcttttcggaataaac |
35782039 |
T |
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| Q |
134 |
cttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaatctt |
200 |
Q |
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| T |
35782038 |
cttgtcttctttttgagaaagtgacttgcttgttggtttctttttcaagctttttgatctcaatctt |
35781972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 9668432 - 9668579
Alignment:
| Q |
64 |
ggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtt |
163 |
Q |
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| T |
9668432 |
ggggaaaacaccaccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtc |
9668531 |
T |
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| Q |
164 |
tgttggaatctttctcaaccttcttgatctcaatcttctggcgcccta |
211 |
Q |
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| T |
9668532 |
tgttcgatgctttgtcaatcttcttgatctcgatcttcttgtgcccta |
9668579 |
T |
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