View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_low_37 (Length: 224)
Name: NF15204_low_37
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 47538912 - 47539104
Alignment:
| Q |
16 |
cttctttctctccttcaccccctcccataaactcactagtcaacaaacaaaactcatcaaagtcaatcaactcatctccattagaatcaaacttgccaac |
115 |
Q |
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| T |
47538912 |
cttctttctctccttcacctcctcccataaactcactagtcaacaaacaaaactcatcaaaatcaatcaactcatctccattagaatcaaacttgccaac |
47539011 |
T |
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| Q |
116 |
aatatcatcaatctctttctcgtccatgaagattcttatgttccttagtgattccttcaactcttgcttcgttatgaatccatcaccattctt |
208 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47539012 |
aatatcatcaatctctttctcatccatgaagattcttatgttccttaatgattccttcaactcttgctttgttatgaatccatcaccattctt |
47539104 |
T |
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