View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15204_low_4 (Length: 612)
Name: NF15204_low_4
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_4 |
 | |
|
| [»] scaffold0264 (2 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0264 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 207 - 596
Target Start/End: Original strand, 16989 - 17378
Alignment:
| Q |
207 |
gggttaactatatcttttgaatattttgtctattgtgatctctttgggactctttggtgttaattcttcgtttgggttctctgaaataattcannnnnnn |
306 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16989 |
gggttaactatatcttttaaatattttgtctattgtgatctctttgggactctttggtgttaattcttcgtttgggttctctgaaataattcattttttt |
17088 |
T |
|
| Q |
307 |
ctttaaacacattagtcatttgagcttaattgtttgattattactctttaaaaccatattcaagggattaatttgatctcttcatttatattcagaattc |
406 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17089 |
ctttaaaaacattagtcatttgagcttaattgtttgattattactctttaaaaccatgttcatgggattaatttgatctcttcatttatattcagaattc |
17188 |
T |
|
| Q |
407 |
aatttaattccatatgttttgttgttgatcatgctatatatagtaaatgatatatagccaattctcacgaaatgtctttgagttgaatggagaaacagtt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17189 |
aatttaattccatatgttttgttgttgatcatgctatatatagtgaatgatatatagccaattctcacgaaatgtctttgagttgaatggaaaaacagtt |
17288 |
T |
|
| Q |
507 |
tctttgattttaatcccgaatttggtggaaaacatgctgatactggggctaagttactcaatatacctattatgacgacttcgtgagact |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17289 |
tctttgattttaatcccgaatttggtggaaaacatgctgatactggggctaagttactcaatatacctattatgacgacttcatgagact |
17378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 16783 - 16946
Alignment:
| Q |
1 |
taaggattgagaaaaagataattttaaagtaagccatggattttgtttatcgagtctaattgaaaatgccgtttccacgaaaccgcactacgctcatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16783 |
taaggattgagaaaaagataattttaaagtaagccatggattttgtttatcgagtctaattgaaaatgccgtttccacgaaaccgtactacgctcatgaa |
16882 |
T |
|
| Q |
101 |
ccgcttatttttggtcctggcttgtttgcgggattctatttttcatgttatatattgtttttag |
164 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16883 |
ccgcttatttttggtcctggcttgtttgtgggattctatttttcatgttatatattgtttttag |
16946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20086834 - 20086899
Alignment:
| Q |
1 |
taaggattgagaaaaagataattttaaagtaagccatggattttgtttatcgagtctaattgaaaa |
66 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20086834 |
taaggattgagaaaaagagaattctagagtaagccatggattttgtttatcgagtctaattgaaaa |
20086899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20128562 - 20128627
Alignment:
| Q |
1 |
taaggattgagaaaaagataattttaaagtaagccatggattttgtttatcgagtctaattgaaaa |
66 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20128562 |
taaggattaagaaaaagagaattttagagtaagccatggattttgtttatcgagtctaattgaaaa |
20128627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22204308 - 22204243
Alignment:
| Q |
1 |
taaggattgagaaaaagataattttaaagtaagccatggattttgtttatcgagtctaattgaaaa |
66 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22204308 |
taaggattaagaaaaagagaattttagagtaagccatggattttgtttatcgagtctaattgaaaa |
22204243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18997645 - 18997689
Alignment:
| Q |
1 |
taaggattgagaaaaagataattttaaagtaagccatggattttg |
45 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
18997645 |
taaggattgagaaaaagagaattttagagtaagccatggattttg |
18997689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 435 - 544
Target Start/End: Complemental strand, 7769420 - 7769318
Alignment:
| Q |
435 |
tcatgctatatatagtaaatgatatatagccaattctcacgaaatgtctttgagttgaatggagaaacagtttctttgattttaatcccgaatttggtgg |
534 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||| ||||| ||| |||||| |||||||||||||||||||||| || ||||||||| |
|
|
| T |
7769420 |
tcatgctatatatagcaaatgatatatagctaattcacacaaaatg-------gttaaatggaaaaacagtttctttgattttaattgcggatttggtgg |
7769328 |
T |
|
| Q |
535 |
aaaacatgct |
544 |
Q |
| |
|
|||||||||| |
|
|
| T |
7769327 |
aaaacatgct |
7769318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47143 - 47099
Alignment:
| Q |
1 |
taaggattgagaaaaagataattttaaagtaagccatggattttg |
45 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
47143 |
taaggattgagagaaagagaattttagagtaagccatggattttg |
47099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4655 - 4611
Alignment:
| Q |
1 |
taaggattgagaaaaagataattttaaagtaagccatggattttg |
45 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
4655 |
taaggattgagagaaagagaattttagagtaagccatggattttg |
4611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University