View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15204_low_9 (Length: 485)
Name: NF15204_low_9
Description: NF15204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15204_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 1668555 - 1668126
Alignment:
| Q |
19 |
ttaatgaccatgagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatg |
118 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668555 |
ttaatgaccatgagatgggtctaattggtcttggaggaggaccaacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttctcaatg |
1668456 |
T |
|
| Q |
119 |
tttggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggtt |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
1668455 |
tttggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtcaagtgttaggaaatggtgttgttactactcctttggtt |
1668356 |
T |
|
| Q |
219 |
cctcgtgaaaaagatacatcatattttgtttcattacgaggcattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgt |
318 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668355 |
cctcgtgaaaaagatacatcatattttgttacattactaggtattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgt |
1668256 |
T |
|
| Q |
319 |
tggttgattccggaacaccaccaattctattaccacaacaattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacaga |
418 |
Q |
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|||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668255 |
tggttgattcaggaacaccaccaattctattgccgcaacaattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacaga |
1668156 |
T |
|
| Q |
419 |
tgatccaactttgggtactcaactttgtta |
448 |
Q |
| |
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|||||||| ||||||||||||||||||||| |
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| T |
1668155 |
tgatccaagtttgggtactcaactttgtta |
1668126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 1680091 - 1679662
Alignment:
| Q |
19 |
ttaatgaccatgagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1680091 |
ttaatgaccatgagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatg |
1679992 |
T |
|
| Q |
119 |
tttggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggtt |
218 |
Q |
| |
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||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||| | || || || ||||| ||||| ||| |
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| T |
1679991 |
tttggttcctttcctcaccgacataacaatttcaagccaaatgagttttggaaaagggagtgaagtgttaggggaaggcgtggttactacacctttagtt |
1679892 |
T |
|
| Q |
219 |
cctcgtgaaaaagat---acatcatattttgtttcattacgaggcattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaaca |
315 |
Q |
| |
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| |||||| ||||| |||||||||| |||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
1679891 |
caacgtgaacaagatatgacatcatattatgttacattactaggtattagtgtggaagacacatatcttcccatgaatagtactattgaaaagggtaaca |
1679792 |
T |
|
| Q |
316 |
tgttggttgattccggaacaccaccaattctattaccacaacaattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattac |
415 |
Q |
| |
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||||||||||||| ||||||||||| | | |||||||||||||||||||||||| ||||| || |||||| | ||| |||||| ||||| |||||||||| |
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|
| T |
1679791 |
tgttggttgattcgggaacaccaccgaatatattaccacaacaattgtatgatagagtgtatgttgaagtcaaaaacaaagttccattggaacccattac |
1679692 |
T |
|
| Q |
416 |
agatgatccaactttgggtactcaactttg |
445 |
Q |
| |
|
|||||||||| ||||||| |||||||||| |
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|
| T |
1679691 |
ggatgatccaagtttgggtcctcaactttg |
1679662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 1661293 - 1660864
Alignment:
| Q |
19 |
ttaatgaccatgagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatg |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1661293 |
ttaatgaccatgagatgggtctaattggtcttggaggaggaccaacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttctcaatg |
1661194 |
T |
|
| Q |
119 |
tttggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || ||||| ||||| ||| |
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| T |
1661193 |
tttggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtcaagtgttaggggatggtgtggttactacacctttagtt |
1661094 |
T |
|
| Q |
219 |
cctcgtgaaaaagat---acatcatattttgtttcattacgaggcattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaaca |
315 |
Q |
| |
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| |||||| ||||| ||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
1661093 |
caacgtgaacaagatatgacatcatattttgttacattactaggtattagtgtggaagacacatatcttcccatgaatagtactattgaaaagggtaaca |
1660994 |
T |
|
| Q |
316 |
tgttggttgattccggaacaccaccaattctattaccacaacaattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattac |
415 |
Q |
| |
|
||||||||||||| ||||||||||| | | |||||||||||||||||||||||| ||||| || |||||| | ||| || ||| |||| ||| |||||| |
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|
| T |
1660993 |
tgttggttgattcgggaacaccaccgaatatattaccacaacaattgtatgatagagtgtatgttgaagtcaaaaacaatgttccattagaactcattac |
1660894 |
T |
|
| Q |
416 |
agatgatccaactttgggtactcaactttg |
445 |
Q |
| |
|
| ||||||||| ||||||| |||||||||| |
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|
| T |
1660893 |
aaatgatccaagtttgggtcctcaactttg |
1660864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 24546992 - 24546795
Alignment:
| Q |
21 |
aatgaccatgagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtt |
120 |
Q |
| |
|
|||||| | ||||||||| | || ||||||||| ||||||| |||||| ||||||||||||||| ||| ||||||||||| | |||||||||||||| |
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| T |
24546992 |
aatgacaaagagatgggtataataggtcttggaagaggacccttgtcactcgtttctcaaataggttcttcttttggaggcaagatgttttctcaatgtt |
24546893 |
T |
|
| Q |
121 |
tggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggtt |
218 |
Q |
| |
|
||||||| |||| ||| | | ||| |||||| |||||||||||| ||||| |||||||| || || |||||||| || |||| ||||||||| |
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|
| T |
24546892 |
tggttccattccacactaaccctagtattacaagcccaatgagttttggtaaaggaagtgaagtattggggaatggtgtggtttctacacctttggtt |
24546795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 15798097 - 15797909
Alignment:
| Q |
30 |
gagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctt |
129 |
Q |
| |
|
||||||||| | || ||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| | |
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|
| T |
15798097 |
gagatgggtataataggtcttggaagaggacccttgtcacttgtttctcaaataggttcttcccttggaggcaacatgttttctcaatgtttggttccat |
15797998 |
T |
|
| Q |
130 |
tcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggtt |
218 |
Q |
| |
|
|| || | | |||||||||| |||||||||||| ||||| |||||||| || || |||||||| || |||| ||||||||| |
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|
| T |
15797997 |
tcaatactaaccctagtatttcaagcccaatgagttttggtaaaggaagtgaagtattggggaatggtgtggtttctacacctttggtt |
15797909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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