View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_high_13 (Length: 475)
Name: NF15205_high_13
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 49271701 - 49271239
Alignment:
| Q |
1 |
tgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttgtggctgttggtgatggtattgaagaacctt |
100 |
Q |
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| T |
49271701 |
tgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattgaagaacctt |
49271602 |
T |
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| Q |
101 |
actatgttagatttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgtgtaactgtaannnnnnnnagaaattgtgtgcttagt |
200 |
Q |
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| T |
49271601 |
actatgttagatttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgtgtaactgta-gtttttttagaaattgtgtgcttagt |
49271503 |
T |
|
| Q |
201 |
agtgaagtgtgatgggtcataataaggattgcggatccataataagccacaaaattgcacacaaacagagtacttttctctgttttaagatttgccactt |
300 |
Q |
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| T |
49271502 |
agtgaagtgtgatgggtcataataaggattgcggatccataataagccacaaaattgcacacaaacggagtacttttctctgttttaagatttgccactt |
49271403 |
T |
|
| Q |
301 |
tctttttatcctcaaaggtgtaatgaagtttgaccttttgcttatacaatctgtctcaaatttctgtattttatatcttcccttacacattgtttctatt |
400 |
Q |
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| T |
49271402 |
tctttttatcctcaaaggtgtaatgaagtttgaccttatccttatacaatctgtctcaaatttctgtattttatatcttcccttacacattgtttctatt |
49271303 |
T |
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| Q |
401 |
tctatgatccatcagcaagttcttttgaaaaatttagacaaatattgattcataaccacttctt |
464 |
Q |
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| T |
49271302 |
tctatgatccatcagcaagtccttttgaaaaatttagacaaatattgatccataaccacttctt |
49271239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 49277618 - 49277455
Alignment:
| Q |
1 |
tgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttgtggctgttggtgatggtattgaagaacctt |
100 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| |
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| T |
49277618 |
tgtccttctgttcctggtactctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctggtattgaagaacctt |
49277519 |
T |
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| Q |
101 |
actatgttagatttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgt |
164 |
Q |
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| T |
49277518 |
attatgttagatttcagaaggcttccacttttactcagaacaagaatcaagatttcagcggtgt |
49277455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 49269253 - 49269119
Alignment:
| Q |
1 |
tgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttgtggctgttggtgatggtattga---agaac |
97 |
Q |
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||||| ||||||||||||| | | |||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||| ||| |||| |
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| T |
49269253 |
tgtccttctgttcctggtgctttatgtgctcctgttcgaactttcacagataccgatggaactaaagttatggctgttggtgatggtaatgatcttgaac |
49269154 |
T |
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| Q |
98 |
cttactatgttagatttcagaaggcttccactttt |
132 |
Q |
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|||| |||||||| ||||||| || |||||||||| |
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| T |
49269153 |
cttattatgttaggtttcagagggtttccactttt |
49269119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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