View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15205_high_15 (Length: 427)

Name: NF15205_high_15
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15205_high_15
NF15205_high_15
[»] chr5 (4 HSPs)
chr5 (166-403)||(2394463-2394709)
chr5 (1-107)||(2397678-2397786)
chr5 (126-228)||(43379444-43379546)
chr5 (135-228)||(43378579-43378672)
[»] chr8 (6 HSPs)
chr8 (8-228)||(28584220-28584446)
chr8 (136-228)||(39308675-39308767)
chr8 (136-228)||(39309638-39309730)
chr8 (132-233)||(13017749-13017850)
chr8 (126-175)||(42578769-42578818)
chr8 (154-186)||(3572145-3572177)
[»] chr6 (3 HSPs)
chr6 (151-233)||(18065721-18065803)
chr6 (131-187)||(13207394-13207450)
chr6 (126-177)||(10838150-10838202)
[»] chr3 (6 HSPs)
chr3 (151-233)||(34936717-34936799)
chr3 (126-228)||(39232258-39232360)
chr3 (113-207)||(17057131-17057224)
chr3 (126-206)||(39229431-39229511)
chr3 (107-181)||(1772921-1772994)
chr3 (110-177)||(7267432-7267499)
[»] chr7 (7 HSPs)
chr7 (105-175)||(35753004-35753073)
chr7 (129-228)||(18332809-18332908)
chr7 (113-207)||(43492967-43493060)
chr7 (131-187)||(42253041-42253096)
chr7 (113-208)||(41347118-41347212)
chr7 (126-175)||(25871763-25871812)
chr7 (136-228)||(48204046-48204138)
[»] chr2 (2 HSPs)
chr2 (135-228)||(34229043-34229136)
chr2 (113-177)||(10148561-10148624)
[»] scaffold0151 (1 HSPs)
scaffold0151 (120-183)||(20792-20855)
[»] chr4 (3 HSPs)
chr4 (135-183)||(24484835-24484883)
chr4 (135-228)||(39310403-39310496)
chr4 (126-177)||(32158857-32158909)
[»] chr1 (1 HSPs)
chr1 (132-233)||(46178127-46178228)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 166 - 403
Target Start/End: Complemental strand, 2394709 - 2394463
Alignment:
Q  166 ccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaagacgcacccgg---gaaaatt-------gaaaattgctg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  ||||   |||||||       |||||||||||    
T  2394709 ccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaa-acacctccggaatgaaaattaaaagttgaaaattgctg 2394611  T
Q  256 aaacatgtcacatacggaatgttttaagctgaaacatttgaaaattgctctctccagtgttgctctgaagccagtctttatcggaagataatttccaata 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394610 aaacatgtcacatacggaatgttttaagctgaaacatttgaaaattgctctctccagtgttgctctgaagccagtctttatcggaagataatttccaata 2394511  T
Q  356 agctattttttactctttttgtttggaaatagtctatcggaagctatc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2394510 agctattttttactctttttgtttggaaatagtctatcggaagttatc 2394463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2397786 - 2397678
Alignment:
Q  1 cgagagggagagggagatgcagcaatgattttgagaagaggaagaaggaaggcgcgtgttgttgtatcagagagaga--agaagatgaaactcgcatgac 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||    
T  2397786 cgagagggagagggagatgcagcagtgattttgagaagaggaagaaggaaggcgcgtgttgttgtatcagagagagaacaaaagatgaaacgcgcatgac 2397687  T
Q  99 ttttcttat 107  Q
    |||| ||||    
T  2397686 ttttgttat 2397678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 43379444 - 43379546
Alignment:
Q  126 tttctaaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaa 225  Q
    |||| ||| ||||||||| |  |||||| ||||||||||||||||||||||| |||||||||    |  |||||||||||||   || ||||||||||||    
T  43379444 tttccaaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaa 43379543  T
Q  226 aga 228  Q
    |||    
T  43379544 aga 43379546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 43378672 - 43378579
Alignment:
Q  135 cttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaaga 228  Q
    |||||||||||  |||||| ||||||||||||||| ||||||| |||||||||  | |  ||| |||||||||   || |||||||||||||||    
T  43378672 cttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctagaatggggtaaatggagccttcataaatggagcaaaga 43378579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 28584220 - 28584446
Alignment:
Q  8 gagagggagatgcagcaatgattttgagaagaggaagaaggaagg-----cgcgtgttgttgtatcagagagagaaga-agatgaaactcgcatgacttt 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||     ||||||||||||||||||||||| || | ||||||||  |||||||||||    
T  28584220 gagagggagatgcagcagtgattttgagaagaggaagaaggaaggaggcgcgcgtgttgttgtatcagagagaaaacagagatgaaatgcgcatgacttt 28584319  T
Q  102 tcttatttataaaacaagtgtttgtttctaaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataa 201  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28584320 tcttatttataaaacaagtgtttgtttataaatcttttaatctcggcccttggttttatttttgccacgtgtcacatatctaagaggcaaacagggataa 28584419  T
Q  202 atggaggtctcttaaatggagcaaaga 228  Q
    |||||||||||||||||||||||||||    
T  28584420 atggaggtctcttaaatggagcaaaga 28584446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 39308767 - 39308675
Alignment:
Q  136 ttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaaga 228  Q
    |||||||| | ||||||  ||||| |||||||||||||||   ||||| ||||  || |||||||||||||||| || |||||||||||||||    
T  39308767 ttttaatcccagcccttcattttagttttgccacatgtcagtcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaaga 39308675  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 39309638 - 39309730
Alignment:
Q  136 ttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaaga 228  Q
    |||||||||| ||||||  ||||  |||||||||||||||   ||||| ||||  || |||||||||||||||| || |||||||||||||||    
T  39309638 ttttaatctcagcccttcatttttgttttgccacatgtcaatcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaaga 39309730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 13017749 - 13017850
Alignment:
Q  132 aatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaagacgc 231  Q
    |||||||||||||  ||| ||| |||| |||||||||||||||| | ||||| |  |  ||||||  ||||||||| |||| ||||||||||||||| ||    
T  13017749 aatcttttaatctgagcctttgattttgtttttgccacatgtcataaatctatgcagtgaacaggtgtaaatggagctctcataaatggagcaaagatgc 13017848  T
Q  232 ac 233  Q
    ||    
T  13017849 ac 13017850  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 42578818 - 42578769
Alignment:
Q  126 tttctaaatcttttaatctcggcccttggttttatttttgccacatgtca 175  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||||||||||    
T  42578818 tttccaaatcttttaatctcagccattgattttatttttgccacatgtca 42578769  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 3572145 - 3572177
Alignment:
Q  154 gttttatttttgccacatgtcacatatctaaga 186  Q
    |||||||||||||||||||||||| ||||||||    
T  3572145 gttttatttttgccacatgtcacacatctaaga 3572177  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 18065803 - 18065721
Alignment:
Q  151 ttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaagacgcac 233  Q
    ||||||||||||||||||||||||| |||||||  | | ||| |||||||||||||||| |  ||||||||||||||| ||||    
T  18065803 ttggttttatttttgccacatgtcatatatctataaagtaaaaagggataaatggaggtttggtaaatggagcaaagatgcac 18065721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 13207450 - 13207394
Alignment:
Q  131 aaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagag 187  Q
    |||||||||||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  13207450 aaatcttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagag 13207394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 10838202 - 10838150
Alignment:
Q  126 tttctaaatcttttaatctcggcccttggttttattt-ttgccacatgtcaca 177  Q
    ||||||||  |||||||||  |||||||||||||||| |||||||||||||||    
T  10838202 tttctaaactttttaatcttagcccttggttttatttgttgccacatgtcaca 10838150  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 34936799 - 34936717
Alignment:
Q  151 ttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaagacgcac 233  Q
    ||||||||||||||||||||||||||| ||||| || |  || |||||||||||||||| |  ||||||||||||||| ||||    
T  34936799 ttggttttatttttgccacatgtcacaaatctatgaagtgaaaagggataaatggaggtatggtaaatggagcaaagatgcac 34936717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 39232258 - 39232360
Alignment:
Q  126 tttctaaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggagg-tctcttaaatggagca 224  Q
    |||||||| ||||||||||||||| |||||| |||||| || |||||||||| ||| |||| | ||| |||  |||||||||| |||| |||||||||||    
T  39232258 tttctaaaccttttaatctcggcctttggttctattttagcaacatgtcacacatccaagaagtaaaaaggagtaaatggaggctctc-taaatggagca 39232356  T
Q  225 aaga 228  Q
    ||||    
T  39232357 aaga 39232360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 17057224 - 17057131
Alignment:
Q  113 aaacaagtgtttgtttctaaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggag 207  Q
    |||||||||||| |||| ||| |||||||||||  || ||||||| ||||||||||| ||||||| |||||||| |  ||||||| |||||||||    
T  17057224 aaacaagtgttt-tttccaaaccttttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaagaagtgaacaggggtaaatggag 17057131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 39229511 - 39229431
Alignment:
Q  126 tttctaaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatgga 206  Q
    |||||||| ||||||||||| | | |||||| |||||| ||||||||||||| ||| |||| ||||| |||  ||||||||    
T  39229511 tttctaaaccttttaatctcagtctttggttctattttagccacatgtcacacatcaaagaagcaaaaaggagtaaatgga 39229431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 1772994 - 1772921
Alignment:
Q  107 tttataaaacaagtgtttgtttctaaatcttttaatctcggcccttggttttat-ttttgccacatgtcacatatc 181  Q
    ||||||||||||||| || ||||  || ||||||||| |  ||||||||||| | |||||||||||||||||||||    
T  1772994 tttataaaacaagtgcttttttc--aaccttttaatcccaacccttggttttctattttgccacatgtcacatatc 1772921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 7267432 - 7267499
Alignment:
Q  110 ataaaacaagtgtttgtttctaaatcttttaatctcggcccttggttttat-ttttgccacatgtcaca 177  Q
    ||||||||||||||| |||| ||  ||||||||||| ||| |||||||| | |||||||||||||||||    
T  7267432 ataaaacaagtgttt-tttccaacccttttaatctcagcctttggttttctattttgccacatgtcaca 7267499  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 35753004 - 35753073
Alignment:
Q  105 tatttataaaacaagtgtttgtttctaaatcttttaatctcggcccttggttttatttttgccacatgtca 175  Q
    ||||||| |||||||||||| |||| ||||||||||||| | ||| ||| |||||||||||||||||||||    
T  35753004 tatttatcaaacaagtgttt-tttccaaatcttttaatcacagccattgattttatttttgccacatgtca 35753073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 18332809 - 18332908
Alignment:
Q  129 ctaaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggagg-tctcttaaatggagcaaag 227  Q
    ||||| ||||||||||||| | |||||| |||||| ||||||||||||| ||| |||| ||||| | |  |||||||||| |||| ||||||||||||||    
T  18332809 ctaaaccttttaatctcggtctttggttctattttagccacatgtcacacatccaagaagcaaaaaagagtaaatggaggttctc-taaatggagcaaag 18332907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 43492967 - 43493060
Alignment:
Q  113 aaacaagtgtttgtttctaaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggag 207  Q
    |||||||||||| |||| ||| |||||||||||  || ||||||| ||||||||||  ||||||| |||||||| |  ||||||| |||||||||    
T  43492967 aaacaagtgttt-tttccaaaccttttaatctcaaccgttggtttcatttttgccatgtgtcacacatctaagaagtgaacaggggtaaatggag 43493060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 42253041 - 42253096
Alignment:
Q  131 aaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagag 187  Q
    ||||||||||||||| ||||||| ||||||||||| || |||||||| |||||||||    
T  42253041 aaatcttttaatctcagcccttgtttttatttttgaca-atgtcacacatctaagag 42253096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 41347212 - 41347118
Alignment:
Q  113 aaacaagtgtttgtttctaaatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggagg 208  Q
    |||||||||||| | | ||||| |||||||||| ||||||| ||| || |||||||||||||| | |||||  |   |||||||||||||||||||    
T  41347212 aaacaagtgtttatgt-taaattttttaatctcagcccttgatttaatatttgccacatgtcagacatctacaaaataaacagggataaatggagg 41347118  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 25871812 - 25871763
Alignment:
Q  126 tttctaaatcttttaatctcggcccttggttttatttttgccacatgtca 175  Q
    |||||||||||||||||| |  |||||  |||||||||||||||||||||    
T  25871812 tttctaaatcttttaatcccaacccttaattttatttttgccacatgtca 25871763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 48204046 - 48204138
Alignment:
Q  136 ttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaaga 228  Q
    ||||||||||  |||||  ||||| |||||||||||||||  |||||| ||||  || ||||| ||||||||   |||||||| |||||||||    
T  48204046 ttttaatctcaacccttaattttaattttgccacatgtcagttatctatgaggtgaaaagggaaaaatggagccttcttaaattgagcaaaga 48204138  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 34229043 - 34229136
Alignment:
Q  135 cttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaaga 228  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| ||||| ||   |||  ||| ||||| ||||  ||||||||||||||||||    
T  34229043 cttttaatctcagccattggttttattttttccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagcaaaga 34229136  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 10148561 - 10148624
Alignment:
Q  113 aaacaagtgtttgtttctaaatcttttaatctcggcccttggttttatttttgccacatgtcaca 177  Q
    |||||||||||| |||| |||  ||||||||||  |||||| |||||||||| ||||||||||||    
T  10148561 aaacaagtgttt-tttccaaactttttaatctcaacccttgattttatttttaccacatgtcaca 10148624  T

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Target: scaffold0151 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 20855 - 20792
Alignment:
Q  120 tgtttgtttctaaatcttttaatctcggcccttggttttatttttgccacatgtcacatatcta 183  Q
    ||||| |||| ||| ||||||||||| ||| |||||||||||||| |||||||||||| |||||    
T  20855 tgtttttttccaaaccttttaatctcagccattggttttatttttaccacatgtcacacatcta 20792  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 24484883 - 24484835
Alignment:
Q  135 cttttaatctcggcccttggttttatttttgccacatgtcacatatcta 183  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| |||||    
T  24484883 cttttaatctcagccattggttttattttttccacatgtcacacatcta 24484835  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 39310496 - 39310403
Alignment:
Q  135 cttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaaga 228  Q
    ||||||||||| ||| |||||||||||||| |||||||||| | |||||  |    ||  ||||||||| ||||  ||||||||||||||||||    
T  39310496 cttttaatctcagccattggttttattttttccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaaga 39310403  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 32158909 - 32158857
Alignment:
Q  126 tttctaaatcttttaatctcggcccttggtttt-atttttgccacatgtcaca 177  Q
    |||||||| ||||||||||| |||||||||||| | |||||| ||||||||||    
T  32158909 tttctaaaccttttaatctctgcccttggttttaacttttgctacatgtcaca 32158857  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 46178127 - 46178228
Alignment:
Q  132 aatcttttaatctcggcccttggttttatttttgccacatgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaagacgc 231  Q
    |||||||||||||  ||| ||| |||| |||||||||| ||||| | ||||| |  |  ||||||  ||||||||| |||| ||||||||||||||| ||    
T  46178127 aatcttttaatctgagcctttgattttgtttttgccacgtgtcataaatctatgcagtgaacaggtgtaaatggagctctcataaatggagcaaagatgc 46178226  T
Q  232 ac 233  Q
    ||    
T  46178227 ac 46178228  T

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