View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_high_18 (Length: 367)
Name: NF15205_high_18
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 40839246 - 40839586
Alignment:
| Q |
19 |
gttggatggcccaaaggtctctgacccctaacattattcccaacttgccaaacatggttcaaccttgttatgttatatttatcagaaggcaaaactaatc |
118 |
Q |
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| T |
40839246 |
gttggatggcccaaaggtctctgacccctaacattattcccaacttgccaaacatggttcaaccttgttatgttatatttatcagaaggcaaaactaatc |
40839345 |
T |
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| Q |
119 |
tagcatagatagtataaaaatttgacccttgatcatgttgaatcgacatatctgacacattaaggccaatatcggtaggtaaaagactgcaacctctttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40839346 |
tagcatagatagtataaaaatttgacccttgatcatgttgaatcgacatatctgacacattaaggccaatatcggtaggtaaaagactacaacctctttt |
40839445 |
T |
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| Q |
219 |
ggttcctttagtaacatcataggtaccaactggcaaatatgtaccatggtatctgatccctatgattgcctttgttccaatcatttcagccctattccct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40839446 |
ggttcctttagtaacatcataggtaccaactggcaaatatgtaccatggtatctgatccctatgattgcctttgttccaatcatttcagccctattccct |
40839545 |
T |
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| Q |
319 |
ggattcacaccccatcctatccacccatccccttgacctat |
359 |
Q |
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| T |
40839546 |
ggattcacaccccatcctatccacccatccccttgacctat |
40839586 |
T |
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