View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_high_21 (Length: 334)
Name: NF15205_high_21
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 20706121 - 20706386
Alignment:
| Q |
13 |
ttctatcattattttgcagatttatcactttcaagtctaactaatttccaatatttagaataaaaaatcaattttttaacaaaaggaggactttggttga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20706121 |
ttctatcattattttgcagatttatcactttcaagtctaactaatttccaatatttagaataaaaaatcaattttttaacaaaaggaggactttggttga |
20706220 |
T |
|
| Q |
113 |
aaatttacaaatttattgaagtaaggaataaacaaacgaatgaacctttaacagtgaagtataaacg-aatgtaaaaatagtcattaaatacggtgaaac |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20706221 |
aaatttacaaatttattgaagtaaggaataaacaaacgaatgaacctttaacagtgaagtataaacgaaatgtaaaaatagtcattaaatacggtgaaac |
20706320 |
T |
|
| Q |
212 |
gctaaacaaacctttaa-ttttttgtttctttctgtttatcacttccaaacctaaaactaattttc |
276 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20706321 |
gctaaacaaacctttaatttttttgtttctttctgtttatcacttccaaacctaaaactaattttc |
20706386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 20874165 - 20874430
Alignment:
| Q |
13 |
ttctatcattattttgcagatttatcactttcaagtctaactaatttccaatatttagaataaaaaatcaattttttaacaaaaggaggactttggttga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20874165 |
ttctatcattattttgcagatttatcactttcaagtctaactaatttccaatatttagaataaaaaatcaattttttaacaaaaggaggactttggttga |
20874264 |
T |
|
| Q |
113 |
aaatttacaaatttattgaagtaaggaataaacaaacgaatgaacctttaacagtgaagtataaacg-aatgtaaaaatagtcattaaatacggtgaaac |
211 |
Q |
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| T |
20874265 |
aaatttacaaatttattgaagtaaggaataaacaaacgaatgaacctttaacagtgaagtataaacgaaatgtaaaaatagtcattaaatacggtgaaac |
20874364 |
T |
|
| Q |
212 |
gctaaacaaacctttaa-ttttttgtttctttctgtttatcacttccaaacctaaaactaattttc |
276 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20874365 |
gctaaacaaacctttaatttttttgtttctttctgtttatcacttccaaacctaaaactaattttc |
20874430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 20706499 - 20706556
Alignment:
| Q |
277 |
aatatctactactactataagaaaatcacactccaacaaaatttcatagttatcctcg |
334 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20706499 |
aatatctactactactgtaagaaaatcacactccaacaaaatttcatagttatcctcg |
20706556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 20874543 - 20874600
Alignment:
| Q |
277 |
aatatctactactactataagaaaatcacactccaacaaaatttcatagttatcctcg |
334 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20874543 |
aatatctactactactgtaagaaaatcacactccaacaaaatttcatagttatcctcg |
20874600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 29376266 - 29376214
Alignment:
| Q |
279 |
tatctactactactataagaaaatcacactccaacaaaatttcatagttatcct |
332 |
Q |
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||||||||||||||||||||||||| || || |||||||||||||||||||| |
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| T |
29376266 |
tatctactactactataagaaaatcgtac-gcatcaaaatttcatagttatcct |
29376214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 29376376 - 29376329
Alignment:
| Q |
284 |
actactactataagaaaatcacactccaacaaaatttcatagttatcct |
332 |
Q |
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||||||||||||| ||||||| | | ||||||||||||||||||||||| |
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| T |
29376376 |
actactactataaaaaaatcata-tgcaacaaaatttcatagttatcct |
29376329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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