View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15205_high_25 (Length: 259)
Name: NF15205_high_25
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 10377591 - 10377831
Alignment:
| Q |
8 |
taagaaaatacagactgaatacccaagtaaatctaatcctgtggcaatgacggccgttttgctcctctcaaatatttttacaaga---atcattacaata |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10377591 |
taagaaaatacagactgaatacccaagtaaatctaatcctgtggcaatgacggccgttttgctcctctcaaatatttttacaagaagaatcattacaata |
10377690 |
T |
|
| Q |
105 |
acatgccccacttaggcctttcatgaaaatgagacattacatacatgatgattaagataattcaacagttggagtgctaaaataaaatgtctattgagag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10377691 |
acatgccccacttaggcctttcatgaaaatgagacattacatacatgatgattaagataattcaacagttggagtgctaaaataaaatgtctattgagag |
10377790 |
T |
|
| Q |
205 |
ttatgaaacggagtaaccgatgagagttactcatagagtga |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10377791 |
ttatgaaacggagtaaccgatgagagttactcatagagtga |
10377831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 10441017 - 10441123
Alignment:
| Q |
112 |
ccacttaggcctttcatgaaaatgagacattacatacatgatgattaagataattcaacagttggagtgctaaaataaaatgtctattgagagttatgaa |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
10441017 |
ccacttaggcctttcctgaaaatgagacattacatacatgatgattacgataattcaacaattggattgctgaaataaaatgtctataaagagttatgaa |
10441116 |
T |
|
| Q |
212 |
acggagt |
218 |
Q |
| |
|
||||||| |
|
|
| T |
10441117 |
acggagt |
10441123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 10658624 - 10658566
Alignment:
| Q |
32 |
aagtaaatctaatcctgtggcaatgacggccgttttgctcctctcaaatatttttacaa |
90 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||||||||| |||||||||| |
|
|
| T |
10658624 |
aagtaaatctaatcctgtggcagtgacaaccattttgctcctctcaaacatttttacaa |
10658566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 10102468 - 10102424
Alignment:
| Q |
201 |
agagttatgaaacggagtaaccgatgagagttactcatagagtga |
245 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
10102468 |
agagctatgaaacggattaaccgacgagagttactcatagagtga |
10102424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 10213391 - 10213347
Alignment:
| Q |
201 |
agagttatgaaacggagtaaccgatgagagttactcatagagtga |
245 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
10213391 |
agagctatgaaacggattaaccgacgagagttactcatagagtga |
10213347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 10075439 - 10075395
Alignment:
| Q |
201 |
agagttatgaaacggagtaaccgatgagagttactcatagagtga |
245 |
Q |
| |
|
|||| |||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
10075439 |
agagctatgaaacggagtaactgacgagatttactcatagagtga |
10075395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 10217356 - 10217306
Alignment:
| Q |
70 |
tcctctcaaatatttttaca---agaatcattacaataacatgccccactt |
117 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
10217356 |
tcctctcaaacatttttacaggaagaatcattacaataacatgctccactt |
10217306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 25794063 - 25793951
Alignment:
| Q |
8 |
taagaaaatacagactgaatacccaagtaaatctaatcctgtggcaatgacggccgttttgctcctctcaaatatttttaca---agaatcattacaata |
104 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| |||||||||||||| || || ||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
25794063 |
taagaaaatacaaactgaataacttagtaaatccaatcctgtggcaattacaaccaatttgctcctctcaaacatttttacaagaagaatcattacaata |
25793964 |
T |
|
| Q |
105 |
acatgccccactt |
117 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
25793963 |
acatgccctactt |
25793951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 26796827 - 26796777
Alignment:
| Q |
70 |
tcctctcaaatatttttaca---agaatcattacaataacatgccccactt |
117 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
26796827 |
tcctctcaaacatttttacaggaagaatcattacaataacatgctccactt |
26796777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University