View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15205_high_29 (Length: 249)

Name: NF15205_high_29
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15205_high_29
NF15205_high_29
[»] chr7 (6 HSPs)
chr7 (16-120)||(20693932-20694036)
chr7 (16-120)||(20699410-20699514)
chr7 (91-186)||(20706548-20706642)
chr7 (91-186)||(20874592-20874686)
chr7 (87-129)||(26222541-26222583)
chr7 (84-129)||(14658402-14658447)
[»] scaffold0637 (1 HSPs)
scaffold0637 (16-177)||(6571-6732)
[»] chr4 (2 HSPs)
chr4 (16-66)||(14006032-14006082)
chr4 (87-129)||(11131805-11131847)
[»] chr3 (2 HSPs)
chr3 (84-137)||(36642547-36642600)
chr3 (87-129)||(8494460-8494502)
[»] chr1 (1 HSPs)
chr1 (87-136)||(21905082-21905131)
[»] chr8 (1 HSPs)
chr8 (97-128)||(25699098-25699129)
[»] chr5 (1 HSPs)
chr5 (84-129)||(40366041-40366086)


Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 20693932 - 20694036
Alignment:
Q  16 ataattaggaagaacaatgataatcaaactatttctactactattagaaaacagtattctagtaaatctttataattatcctcagttaaacttataatct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  20693932 ataattaggaagaacaatgataatcaaactatttctactactattagaaaactgtactctagtaaatctttataattatccttagttaaacttataatct 20694031  T
Q  116 tctta 120  Q
    |||||    
T  20694032 tctta 20694036  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 20699410 - 20699514
Alignment:
Q  16 ataattaggaagaacaatgataatcaaactatttctactactattagaaaacagtattctagtaaatctttataattatcctcagttaaacttataatct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  20699410 ataattaggaagaacaatgataatcaaactatttctactactattagaaaactgtactctagtaaatctttataattatccttagttaaacttataatct 20699509  T
Q  116 tctta 120  Q
    |||||    
T  20699510 tctta 20699514  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 20706548 - 20706642
Alignment:
Q  91 ttatcctcagttaaacttataatcttcttaattttatggacttaatcatcgtcttaaaacttaaaaaacgaatttattcatattttgaaaatttaa 186  Q
    |||||||| |||||||||||||||||||||||||||||   | | || |  | |||||| ||| ||||| ||||||||||| ||||||||||||||    
T  20706548 ttatcctcggttaaacttataatcttcttaattttatgaggtaagtcgttat-ttaaaaattacaaaactaatttattcattttttgaaaatttaa 20706642  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 20874592 - 20874686
Alignment:
Q  91 ttatcctcagttaaacttataatcttcttaattttatggacttaatcatcgtcttaaaacttaaaaaacgaatttattcatattttgaaaatttaa 186  Q
    |||||||| |||||||||||||||||||||||||||||   | | || |  | |||||| ||| ||||| ||||||||||| ||||||||||||||    
T  20874592 ttatcctcggttaaacttataatcttcttaattttatgaggtaagtcgttat-ttaaaaattacaaaactaatttattcattttttgaaaatttaa 20874686  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 26222541 - 26222583
Alignment:
Q  87 ataattatcctcagttaaacttataatcttcttaattttatgg 129  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  26222541 ataattatcctcgattaaacttataatcttcttaattttatgg 26222583  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 14658447 - 14658402
Alignment:
Q  84 tttataattatcctcagttaaacttataatcttcttaattttatgg 129  Q
    |||||||||| ||||| ||||| |||||||||| ||||||||||||    
T  14658447 tttataattaacctcaattaaatttataatctttttaattttatgg 14658402  T

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Target: scaffold0637 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 6571 - 6732
Alignment:
Q  16 ataattaggaagaacaatgataatcaaactatttctactactattagaaaacagtattctagtaaatctttataattatcctcagttaaacttataatct 115  Q
    |||||||||||||||||||||||||||||| || |   |||||||||||||  ||| | ||| ||| | |||||||||||||  ||||||||||||||||    
T  6571 ataattaggaagaacaatgataatcaaactcttccacgtactattagaaaatcgtact-tagcaaaacattataattatccttggttaaacttataatct 6669  T
Q  116 tcttaattttatggacttaatcatcgtcttaaaactt-aaaaaacgaatttattcatattttg 177  Q
    |||||| |||||||||| ||| | |||||||||| || ||||||| |||||||||||||||||    
T  6670 tcttaactttatggactcaataaccgtcttaaaaattaaaaaaactaatttattcatattttg 6732  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 14006082 - 14006032
Alignment:
Q  16 ataattaggaagaacaatgataatcaaactatttctactactattagaaaa 66  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14006082 ataattaggaagaacaatgataatcaacctatttctactactattagaaaa 14006032  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 11131805 - 11131847
Alignment:
Q  87 ataattatcctcagttaaacttataatcttcttaattttatgg 129  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||    
T  11131805 ataattatcctcaattaaactaataatcttcttacttttatgg 11131847  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 36642547 - 36642600
Alignment:
Q  84 tttataattatcctcagttaaacttataatcttcttaattttatggacttaatc 137  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||| || |||||||    
T  36642547 tttataattattctcggttaaacttataatcttattaattttacgggcttaatc 36642600  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 8494502 - 8494460
Alignment:
Q  87 ataattatcctcagttaaacttataatcttcttaattttatgg 129  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||    
T  8494502 ataattaacctcagttaagcttgtaatcttcttaattttatgg 8494460  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 21905131 - 21905082
Alignment:
Q  87 ataattatcctcagttaaacttataatcttcttaattttatggacttaat 136  Q
    ||||||| |||| |||||||| ||||||| ||||||||||||||||||||    
T  21905131 ataattaacctcggttaaactcataatctacttaattttatggacttaat 21905082  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 128
Target Start/End: Original strand, 25699098 - 25699129
Alignment:
Q  97 tcagttaaacttataatcttcttaattttatg 128  Q
    ||||||||||||||||||||||||||||||||    
T  25699098 tcagttaaacttataatcttcttaattttatg 25699129  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 40366041 - 40366086
Alignment:
Q  84 tttataattatcctcagttaaacttataatcttcttaattttatgg 129  Q
    |||||||||||  || ||||||||||||||||| ||||||||||||    
T  40366041 tttataattattatcggttaaacttataatctttttaattttatgg 40366086  T

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