View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_high_30 (Length: 247)
Name: NF15205_high_30
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1980919 - 1980690
Alignment:
| Q |
1 |
ctagaatacaaaacgattttagggtaaacaaccctttagagcaaagccaaccatttttaagaaggctgtaatagtcgcatctttcccttctttctcaatc |
100 |
Q |
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| T |
1980919 |
ctagaatacaaaacgattttagggtaaacaaccctttagagcaaagccaaccatttttgagaaggctgtaatagtcgcatctttcccttctttctcaatc |
1980820 |
T |
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| Q |
101 |
tgttaagcgaaaagcatgaacttgatgataagaatactaaatttcataatgcgtgacactaaaaaatacaagaaaggggggatctcaaacactacagata |
200 |
Q |
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| T |
1980819 |
tgttaagcgaaaagcatgaacttgatgataagaatactaaatttcataatgcgtgacactaaaaaatacaagaaaggggggatctcaaacactacagata |
1980720 |
T |
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| Q |
201 |
ataaagtacctttgcttttccggtgggaag |
230 |
Q |
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| T |
1980719 |
ataaagtacctttgcttttccgatgggaag |
1980690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 90804 - 90579
Alignment:
| Q |
1 |
ctagaatacaaaacgattttagggtaaacaaccctttagagcaaagccaaccatttttaagaaggctgtaatagtcgcatctttcccttctttctcaatc |
100 |
Q |
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|||||||||||||| || |||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |
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| T |
90804 |
ctagaatacaaaacaatcttagggtaaacagacctttagggcaaagccaaccatttttgagaaggctgtaatagtcacatctttcccttctctctcaatc |
90705 |
T |
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| Q |
101 |
tgttaagcgaaaagcatgaacttgatgataagaatactaaatttcataatgcgtgacactaaaaaatacaagaaaggggggatctcaaacactacagata |
200 |
Q |
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| T |
90704 |
tgttaagcgaaaagcatgaact---tgataagaatactaaatttcctaatgtgtgacactaaaaaatacaagaaa-ggtggatctcaaatactacagata |
90609 |
T |
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| Q |
201 |
ataaagtacctttgcttttccggtgggaag |
230 |
Q |
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| T |
90608 |
attaagtacctttgcttttccaatgggaag |
90579 |
T |
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