View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_high_33 (Length: 239)
Name: NF15205_high_33
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 9741108 - 9740878
Alignment:
| Q |
3 |
tagatgcggtaccctgctcccatttccggtttcctccaacgctgattgtacccggtaagtgtattgtttattttgtacaacttttgatgaataaatgaac |
102 |
Q |
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| T |
9741108 |
tagatgcagtaccctgctcccatttccgatttcctccaacgctgattgtacccggtaagtgtattgtttattttctacaatttttgatgaacaaatgaac |
9741009 |
T |
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| Q |
103 |
aataaaaacacaatattataaattttattatgaatgctttgcaatggaatgaaaatat-aaattttctgactactttatgtgtttcttatatttacagcg |
201 |
Q |
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| T |
9741008 |
aataaaaacacaatattataaatttcattatgaatgcttggcaatggaatgaacatataaaattttctgactactttatgtgtttcttatatttacagcg |
9740909 |
T |
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| Q |
202 |
tgcattagagttgaagaggaagttgatgatg |
232 |
Q |
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| T |
9740908 |
tgcgttagagttgaagaggaagttgttgatg |
9740878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 9754017 - 9753831
Alignment:
| Q |
13 |
accctgctcccatttccggtttcctccaacgctgattgtacccggtaagtgtattgtttattttgtacaacttttgatgaataaatgaacaataaaaaca |
112 |
Q |
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||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |
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| T |
9754017 |
accctgctcccatttccggtttcctccaacgttcattgtactcggtaagtgtattgtttattttctacaacttttaatgaacaaatgaacaataaaaaca |
9753918 |
T |
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| Q |
113 |
caatattataaattttattatgaatgctttgcaatggaatgaaaatat-aaattttctgactactttatgtgtttcttatatttaca |
198 |
Q |
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| T |
9753917 |
caatattataaatttcagtatgaatgcttggcaatggaatgaaaatataaaattttctgacaactttatgtgtttcttatacttaca |
9753831 |
T |
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