View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_1 (Length: 857)
Name: NF15205_low_1
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 21 - 465
Target Start/End: Complemental strand, 41911993 - 41911571
Alignment:
| Q |
21 |
gtcttagatccaggaactataatatcttttccaaggttatcaatcgttaaaaaaggtatgattaccctttctcttaaaatcatacacatatatcaagcct |
120 |
Q |
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| T |
41911993 |
gtcttagatccgggaactataatatcttttccaaggttatcaatcgttaaaaaaggtatgattaccctttctcttaaaatcatacatatgcatcaagcct |
41911894 |
T |
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| Q |
121 |
aaaaatattttgttgttttgtctaaagaaagaagaagnnnnnnngttttgtatataacctaacctgattgtacgcggcaccaaaccgacaaataatgcac |
220 |
Q |
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| T |
41911893 |
aaaaatattttgttgttttgtctaaagaaagaagaagaaaaaaagttttgtatataacctaaactgattgtacgcggcaccaaaccgacaaataatgcac |
41911794 |
T |
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| Q |
221 |
ttaattagctactgaaaacatgtcttgatttaacttaattaacttatttttctgggtaaggagtcattgtacatcacaatcatacatagttaaggatttg |
320 |
Q |
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| T |
41911793 |
ttaattagctactgaaaacatgtcttgatttaactgaattaacttatttttctgggtaaggagtcattgtacatcacaatcatacatagttaaggatttg |
41911694 |
T |
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| Q |
321 |
ctgccataagataagaccaatatccatggctggaaccaacagtttgtaatatgcataacagccaagtgccaaagacttctgcacagaaacctcttgaaag |
420 |
Q |
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| T |
41911693 |
ctgccataaga-------------------tggaa-caacagtttgta--atgcataacagccaagtgccaaagacttctgcacagaaacctcttgaaag |
41911616 |
T |
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| Q |
421 |
atgcgattcattttgtgtctccgtgaaatcaattaattcaagatg |
465 |
Q |
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| T |
41911615 |
atgcgattcattttgtgtctccgtgaaatcaattaattcaagatg |
41911571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 524 - 823
Target Start/End: Complemental strand, 41911510 - 41911211
Alignment:
| Q |
524 |
catatcctacgtaatgttcaaatatgtatatccctatattattaagccaagattaaacagtcgcttttggatttactatcatatttctccaacctatctt |
623 |
Q |
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| T |
41911510 |
catatcctacgtaatgttcaaatatgtatatccctatattattaagccaagattaaacagtcgcttttggatttactatcatatttctccaacctatctt |
41911411 |
T |
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| Q |
624 |
ttgaatattcaaaagaattcgataagatatatgaccttttttctttaaatcaattaatgtgcacttaattagattgatatgatggatttgttttataatg |
723 |
Q |
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| T |
41911410 |
ttgaatattgaaaagaattcgataagatatatgaccttttttctttaaatcaataaatgtgcacttaattagattgatatgatagatttgttttataatg |
41911311 |
T |
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| Q |
724 |
catgtcacctttggtctaatttaatgatggtcaaataattaaagtgaaagaagtgaatgagtttacgtctgatgtttatattagaaacgaataatatgca |
823 |
Q |
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| T |
41911310 |
tatgtcacctttggtctaatttaatcatggtcaaataattaaagtgaaagaagtgaatgagtttacgtctgatgtttttattagaaacgaataatatgca |
41911211 |
T |
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