View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15205_low_10 (Length: 571)

Name: NF15205_low_10
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15205_low_10
NF15205_low_10
[»] chr2 (11 HSPs)
chr2 (247-541)||(41104949-41105243)
chr2 (18-191)||(41105249-41105421)
chr2 (279-431)||(41105059-41105211)
chr2 (312-396)||(41464747-41464828)
chr2 (312-350)||(6500854-6500892)
chr2 (365-434)||(16408362-16408431)
chr2 (362-411)||(27075012-27075061)
chr2 (291-416)||(41440320-41440441)
chr2 (310-346)||(9113997-9114033)
chr2 (312-344)||(25997346-25997378)
chr2 (367-411)||(43542999-43543043)
[»] chr8 (13 HSPs)
chr8 (279-431)||(16967450-16967600)
chr8 (279-432)||(1364114-1364265)
chr8 (291-433)||(29358622-29358762)
chr8 (288-429)||(30920400-30920540)
chr8 (277-432)||(16967449-16967602)
chr8 (326-421)||(34181546-34181638)
chr8 (278-393)||(9633365-9633478)
chr8 (279-342)||(1364200-1364264)
chr8 (365-411)||(2345730-2345776)
chr8 (313-396)||(9300565-9300645)
chr8 (352-396)||(17871829-17871873)
chr8 (314-389)||(29690471-29690543)
chr8 (312-344)||(38298584-38298616)
[»] chr7 (11 HSPs)
chr7 (281-411)||(40800034-40800162)
chr7 (294-420)||(28923017-28923142)
chr7 (297-429)||(40800034-40800164)
chr7 (288-347)||(2939619-2939679)
chr7 (314-395)||(47612325-47612403)
chr7 (354-411)||(42117475-42117532)
chr7 (279-342)||(1312368-1312432)
chr7 (281-333)||(11823024-11823076)
chr7 (364-416)||(28039706-28039758)
chr7 (314-397)||(35436255-35436335)
chr7 (313-353)||(44615214-44615254)
[»] chr6 (7 HSPs)
chr6 (279-431)||(6686815-6686963)
chr6 (279-431)||(31586062-31586212)
chr6 (278-432)||(6686814-6686964)
chr6 (362-427)||(1941069-1941135)
chr6 (365-400)||(14558316-14558351)
chr6 (290-342)||(31586073-31586126)
chr6 (314-342)||(31159108-31159136)
[»] chr1 (13 HSPs)
chr1 (289-419)||(39217601-39217729)
chr1 (286-423)||(13685612-13685750)
chr1 (286-422)||(13514283-13514420)
chr1 (286-422)||(13611168-13611305)
chr1 (279-343)||(897091-897156)
chr1 (286-423)||(19137418-19137556)
chr1 (297-344)||(101494-101541)
chr1 (356-395)||(13507172-13507211)
chr1 (356-423)||(13650961-13651028)
chr1 (312-346)||(37925807-37925841)
chr1 (294-355)||(40873555-40873617)
chr1 (287-355)||(31533420-31533488)
chr1 (278-326)||(12163522-12163570)
[»] chr5 (9 HSPs)
chr5 (294-421)||(6380529-6380654)
chr5 (277-432)||(6761031-6761184)
chr5 (292-393)||(26152104-26152203)
chr5 (326-397)||(5003993-5004061)
chr5 (279-355)||(4902499-4902577)
chr5 (294-419)||(20511439-20511563)
chr5 (377-419)||(42563850-42563892)
chr5 (367-400)||(1023731-1023764)
chr5 (289-352)||(6380590-6380654)
[»] chr3 (9 HSPs)
chr3 (279-432)||(34307986-34308138)
chr3 (279-411)||(39497998-39498126)
chr3 (279-344)||(45362054-45362119)
chr3 (277-344)||(45361968-45362036)
chr3 (313-355)||(19996070-19996112)
chr3 (279-344)||(46220365-46220431)
chr3 (314-389)||(27302120-27302192)
chr3 (286-333)||(34307994-34308042)
chr3 (312-344)||(44664215-44664247)
[»] chr4 (9 HSPs)
chr4 (298-424)||(10351000-10351122)
chr4 (286-431)||(2324574-2324712)
chr4 (322-392)||(39998168-39998238)
chr4 (311-379)||(27587297-27587362)
chr4 (373-432)||(24252992-24253051)
chr4 (313-343)||(15844120-15844150)
chr4 (353-397)||(13264588-13264632)
chr4 (314-342)||(22048848-22048876)
chr4 (312-395)||(52136734-52136814)
[»] scaffold0006 (1 HSPs)
scaffold0006 (356-423)||(140722-140789)
[»] scaffold0194 (1 HSPs)
scaffold0194 (322-394)||(20111-20180)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 247 - 541
Target Start/End: Complemental strand, 41105243 - 41104949
Alignment:
Q  247 aacatctctttcagtagccaatgaatgagcattactccatccggtcctaaatataagagaagaatattttttatgttcattgaataattaatgtatctag 346  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41105243 aacatctctttcagtagccaatgaatgagcattactccatctggtcctaaatataagagaagaatattttttatgttcattgaataattaatgtatctag 41105144  T
Q  347 attataataatatacactaaatacatcatttattcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagtatcataaatttgtctt 446  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  41105143 attataataatatacattaaatacatcatttattcaatgaacctgaaaaaagaacattctcttatatttaggaccagagggagtatcataaatttgtctt 41105044  T
Q  447 atcgggttgggacttggtcaccataagtaagtgttgacataattgatattttaatcttgtgtaccttgattaggagggaaaaacttatcttgtgt 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41105043 atcgggttgggacttggtcaccataagtaagtgttgacataattgatattttaatcttgtgtaccttgattaggagcgaaaaacttatcttgtgt 41104949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 41105421 - 41105249
Alignment:
Q  18 gaaaaaagaagaagaaagaaactaggtnnnnnnnntcaccacaaggtgcaaaacaaaccacatagggagaaaaccagagaaacaactatcaatcagacta 117  Q
    |||||||||||||||||||||||||||        |||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  41105421 gaaaaaagaagaagaaagaaactaggtaaaaaaa-tcaccagaaggtgcaaaacaaaccacagagggagaaaaccagataaacaactatcaattagacta 41105323  T
Q  118 aagaagactgatgaaggataacaaaggggggagagaggaaatcaaatagtgatgatggtggtgaaggggtagcg 191  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  41105322 aagaagactgatgaaggataacaaaggagggagagaggaaatcaaatagcgatgatggtggtgaaggggtagcg 41105249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 431
Target Start/End: Original strand, 41105059 - 41105211
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataataatatacactaaatacatcattt 377  Q
    |||||| || |||||||||||||||||||   | |||||| | ||||||||||||| | |||||| ||   |||| || ||||  ||| |||||| | ||    
T  41105059 tactccctctggtcctaaatataagagaatgttcttttttcaggttcattgaataaatgatgtatttaatgtatattattataatctagatacattaatt 41105158  T
Q  378 attcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagta 431  Q
    ||||||||||| | |||||| |  |||||||||| |||||||||||| ||||||    
T  41105159 attcaatgaacat-aaaaaatattcttctcttatatttaggaccagatggagta 41105211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 41464747 - 41464828
Alignment:
Q  312 attttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaaaa 396  Q
    |||||||| |||||||||||||||||||||||| | |||||  |||||| |||| |||||||| |||  |||||||||| |||||    
T  41464747 attttttaagttcattgaataattaatgtatctcg-ttata--aatatagactagatacatcacttacacaatgaacctaaaaaa 41464828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 6500854 - 6500892
Alignment:
Q  312 attttttatgttcattgaataattaatgtatctagatta 350  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  6500854 atttttcatgttcattgaataattcatgtatctagatta 6500892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 434
Target Start/End: Complemental strand, 16408431 - 16408362
Alignment:
Q  365 aaatacatcatttattcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagtatca 434  Q
    |||||||||||||||||||||||| ||||||| |||  || |||||| ||   ||||||||| |||||||    
T  16408431 aaatacatcatttattcaatgaacttgaaaaatgaatattttcttatattcgagaccagaggaagtatca 16408362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 411
Target Start/End: Complemental strand, 27075061 - 27075012
Alignment:
Q  362 actaaatacatcatttattcaatgaacctgaaaaaagaaccttctcttat 411  Q
    ||||||||||||||||||||||| ||||| ||||  |||| |||||||||    
T  27075061 actaaatacatcatttattcaattaacctaaaaagtgaacgttctcttat 27075012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 416
Target Start/End: Original strand, 41440320 - 41440441
Alignment:
Q  291 tcctaaatataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacc 389  Q
    ||||||||||||||||| ||| |||||| | ||| ||||||| | ||||||||||| ||||||||    || | |||||| || ||||||||||||||      
T  41440320 tcctaaatataagagaataatgtttttttaggtttattgaattaataatgtatctaaattataatg---taaagtaaatatattatttattcaatgaa-- 41440414  T
Q  390 tgaaaaaagaaccttctcttatgttta 416  Q
    | |||||||||| |||| |||| ||||    
T  41440415 ttaaaaaagaactttcttttatattta 41440441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 9114033 - 9113997
Alignment:
Q  310 atattttttatgttcattgaataattaatgtatctag 346  Q
    ||||||||||  |||||||||||||||||||||||||    
T  9114033 atattttttagattcattgaataattaatgtatctag 9113997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 25997346 - 25997378
Alignment:
Q  312 attttttatgttcattgaataattaatgtatct 344  Q
    |||||||||||||||||||||| ||||||||||    
T  25997346 attttttatgttcattgaataactaatgtatct 25997378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 43542999 - 43543043
Alignment:
Q  367 atacatcatttattcaatgaacctgaaaaaagaaccttctcttat 411  Q
    |||||||||||||| ||||||||| ||||| |||| |||||||||    
T  43542999 atacatcatttattgaatgaacctaaaaaatgaactttctcttat 43543043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 279 - 431
Target Start/End: Original strand, 16967450 - 16967600
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataataatatacactaaatacatcattt 377  Q
    |||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||  ||||||||||| |||||||  |   ||||||||||||||||    
T  16967450 tactccctccggtcctaaatataagagaagaatctttttttaggttcattgaataatctatgtatctagactataatatga---actaaatacatcattt 16967546  T
Q  378 attcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagta 431  Q
    ||||||||||  ||||||||||| |||||||||| ||||||||| |||||||||    
T  16967547 attcaatgaatttgaaaaaagaatcttctcttatatttaggaccggagggagta 16967600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 279 - 432
Target Start/End: Original strand, 1364114 - 1364265
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaatat-tttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcattt 377  Q
    |||||| |||| ||||||||||||||||||||| | |||||| ||| |||||||||||||||||| | || || |||    || ||||||||||| ||||    
T  1364114 tactccttccgatcctaaatataagagaagaatctatttttaagtttattgaataattaatgtatttggactacaatg---taaactaaatacattattt 1364210  T
Q  378 attcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagtat 432  Q
    |||||||||||||  |||||||| |||||||||| ||||||||| ||||||||||    
T  1364211 attcaatgaacctacaaaaagaatcttctcttatatttaggaccggagggagtat 1364265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 291 - 433
Target Start/End: Original strand, 29358622 - 29358762
Alignment:
Q  291 tcctaaatataagagaagaatatt-ttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacc 389  Q
    |||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||||||   || |||||||||||||||||| ||||| | |    
T  29358622 tcctgaatataagagaagaatcttcttttaggttcattgaataattaatgtatctagactataata---taaactaaatacatcatttatacaatgtatc 29358718  T
Q  390 tgaaaaaagaaccttctcttatgtttaggaccagagggagtatc 433  Q
    | ||||||||| |||||||||  |||||||  |||| |||||||    
T  29358719 taaaaaaagaatcttctcttaaatttaggataagagagagtatc 29358762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 429
Target Start/End: Complemental strand, 30920540 - 30920400
Alignment:
Q  288 cggtcctaaatataagagaagaatattttttat--gttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatg 385  Q
    |||||||||||||||||||| | | |||||||   |||||||||| |||||||||||| ||| |||||||   || ||||||||||| ||||||||||||    
T  30920540 cggtcctaaatataagagaatattgttttttaaaggttcattgaacaattaatgtatcaagactataata---taaactaaatacataatttattcaatg 30920444  T
Q  386 aacctgaaaaaagaaccttctcttatgtttaggaccagagggag 429  Q
    |||||||||||| || ||| |||||| | ||||||  |||||||    
T  30920443 aacctgaaaaaataatcttttcttatatctaggactggagggag 30920400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 432
Target Start/End: Complemental strand, 16967602 - 16967449
Alignment:
Q  277 attactccatccggtcctaaatataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataataatatacactaaatacatcat 375  Q
    |||||||| |||||||||||||||||||||||| | |||||| |  |||||||||||| | |||||| ||| | ||| ||   ||  ||| ||||||       
T  16967602 attactccctccggtcctaaatataagagaagattcttttttcaaattcattgaataaatgatgtatttagttcatatta---tagtctagatacataga 16967506  T
Q  376 ttattcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagtat 432  Q
    ||||||||||||||| ||||||||  |||||||||| ||||||||| ||||||||||    
T  16967505 ttattcaatgaacctaaaaaaagattcttctcttatatttaggaccggagggagtat 16967449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 326 - 421
Target Start/End: Original strand, 34181546 - 34181638
Alignment:
Q  326 ttgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaaaaagaaccttctcttatgtttaggacc 421  Q
    |||||||||| |||||| |||| |||||||   || ||||||||||||||||||||||||||  ||||||| ||| |||||||||| |||||||||    
T  34181546 ttgaataatttatgtatatagactataata---taaactaaatacatcatttattcaatgaatttgaaaaatgaatcttctcttatatttaggacc 34181638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 393
Target Start/End: Complemental strand, 9633478 - 9633365
Alignment:
Q  278 ttactccatccggtcctaaatataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataataatatacactaaatacatcatt 376  Q
    ||||||| |||| ||||||||| ||||||| |||||||||| | |||||||||| ||| |||||||||||| |   ||||||||  |||||||| |||||    
T  9633478 ttactccctccgatcctaaatacaagagaaaaatatttttttaggttcattgaagaataaatgtatctagact---ataatataagctaaatacgtcatt 9633382  T
Q  377 tattcaatgaacctgaa 393  Q
    |||||| ||||| ||||    
T  9633381 tattcattgaacatgaa 9633365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 1364264 - 1364200
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaatattttt-tatgttcattgaataattaatgtat 342  Q
    |||||| |||||||||||||||||||||||| | ||||| || ||||||||||||| ||||||||    
T  1364264 tactccctccggtcctaaatataagagaagattctttttgtaggttcattgaataaataatgtat 1364200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 2345776 - 2345730
Alignment:
Q  365 aaatacatcatttattcaatgaacctgaaaaaagaaccttctcttat 411  Q
    |||| ||||||||||||||||||||||||||| ||| ||| ||||||    
T  2345776 aaatgcatcatttattcaatgaacctgaaaaatgaatcttttcttat 2345730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 396
Target Start/End: Complemental strand, 9300645 - 9300565
Alignment:
Q  313 ttttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaaaa 396  Q
    ||||||| |||| ||||||||||||| |||||| | |    ||||||| ||||||||||| ||||||||||||||  |||||||    
T  9300645 ttttttaggttcgttgaataattaatatatctaaact---gtaatataaactaaatacattatttattcaatgaatttgaaaaa 9300565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 17871829 - 17871873
Alignment:
Q  352 aataatatacactaaatacatcatttattcaatgaacctgaaaaa 396  Q
    ||||||||| ||||||||||||||||| | ||||||||| |||||    
T  17871829 aataatatagactaaatacatcatttaatgaatgaacctaaaaaa 17871873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 389
Target Start/End: Original strand, 29690471 - 29690543
Alignment:
Q  314 tttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacc 389  Q
    |||||| |||||| |||||||||||||||||  ||||||  |||||| |||| |||||||| |||| |||||||||    
T  29690471 tttttaggttcatagaataattaatgtatct-tattata--aatatagactagatacatcacttatacaatgaacc 29690543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 38298616 - 38298584
Alignment:
Q  312 attttttatgttcattgaataattaatgtatct 344  Q
    |||||||| ||||||||||||||||||||||||    
T  38298616 attttttaggttcattgaataattaatgtatct 38298584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 281 - 411
Target Start/End: Original strand, 40800034 - 40800162
Alignment:
Q  281 ctccatccggtcctaaatataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttat 379  Q
    |||| |||||||||||||||||||||||||| |||||| | |||||||||||||| ||||||| |||| ||||||   ||   |||||||||||||||||    
T  40800034 ctccctccggtcctaaatataagagaagaatctttttttaggttcattgaataatcaatgtatttagactataatgtaat---ctaaatacatcatttat 40800130  T
Q  380 tcaatgaacctgaaaaaagaaccttctcttat 411  Q
    ||||||||||| ||||||||| ||||||||||    
T  40800131 tcaatgaacctaaaaaaagaatcttctcttat 40800162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 420
Target Start/End: Complemental strand, 28923142 - 28923017
Alignment:
Q  294 taaatataagagaagaatattttttat--gttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctg 391  Q
    |||||||||||||| |||||||||| |  ||||||||||| |||||||||| ||   ||  |||||||| ||||||||||||||||||||||| ||| ||    
T  28923142 taaatataagagaataatattttttttaggttcattgaattattaatgtatata---tactataatataaactaaatacatcatttattcaataaacttg 28923046  T
Q  392 aaaaaagaaccttctcttatgtttaggac 420  Q
    |||||  || ||||| |||| ||||||||    
T  28923045 aaaaattaatcttcttttatatttaggac 28923017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 429
Target Start/End: Complemental strand, 40800164 - 40800034
Alignment:
Q  297 atataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaaa 395  Q
    ||||||||||||| | |||||| | ||||||||||||| | |||||| ||||||| | ||   ||  ||||||||||   ||||||||||||||| ||||    
T  40800164 atataagagaagattctttttttaggttcattgaataaatgatgtatttagattacatta---tagtctaaatacattgattattcaatgaacctaaaaa 40800068  T
Q  396 aagaaccttctcttatgtttaggaccagagggag 429  Q
    ||||  |||||||||| ||||||||| |||||||    
T  40800067 aagattcttctcttatatttaggaccggagggag 40800034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 2939619 - 2939679
Alignment:
Q  288 cggtcctaaatataagagaagaa-tattttttatgttcattgaataattaatgtatctaga 347  Q
    ||||||||||||||||||||||| | |||||||  |||||||||| |||||||||| ||||    
T  2939619 cggtcctaaatataagagaagaatttttttttagattcattgaattattaatgtatgtaga 2939679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 47612325 - 47612403
Alignment:
Q  314 tttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaaa 395  Q
    |||||| |||||||||||||||||||||||| | |||||  |||||| |||| |||||| | |||| |||||||||| ||||    
T  47612325 tttttaggttcattgaataattaatgtatctcg-ttata--aatatagactagatacattacttatacaatgaacctaaaaa 47612403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 42117532 - 42117475
Alignment:
Q  354 taatatacactaaatacatcatttattcaatgaacctgaaaaaagaaccttctcttat 411  Q
    ||||||| |||||||||||||||||||  |||||||| ||||  |||| |||||||||    
T  42117532 taatatagactaaatacatcatttattggatgaacctaaaaagtgaactttctcttat 42117475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 1312368 - 1312432
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaatatt-ttttatgttcattgaataattaatgtat 342  Q
    |||||||||| ||| ||||||||||| || ||  || ||||| ||||||||||||||||||||||    
T  1312368 tactccatccagtcttaaatataagacaataaatttcttttaagttcattgaataattaatgtat 1312432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 11823076 - 11823024
Alignment:
Q  281 ctccatccggtcctaaatataagagaagaatattttttatgttcattgaataa 333  Q
    |||| ||||||| ||||||||| |||||| | ||||||| |||||||||||||    
T  11823076 ctccctccggtcttaaatataatagaagattcttttttaagttcattgaataa 11823024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 28039758 - 28039706
Alignment:
Q  364 taaatacatcatttattcaatgaacctgaaaaaagaaccttctcttatgttta 416  Q
    ||||||||||||||||||||||||  |||||||| || | |||||||| ||||    
T  28039758 taaatacatcatttattcaatgaatttgaaaaaataatcctctcttatattta 28039706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 397
Target Start/End: Complemental strand, 35436335 - 35436255
Alignment:
Q  314 tttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaaaaa 397  Q
    |||||| ||||||||||||||| ||||||||||  |||| ||||||  || | |||||| | ||||||||||||||| ||||||    
T  35436335 tttttaggttcattgaataattgatgtatctag--tata-taatattgaccagatacataagttattcaatgaacctaaaaaaa 35436255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 44615214 - 44615254
Alignment:
Q  313 ttttttatgttcattgaataattaatgtatctagattataa 353  Q
    ||||||| ||||| |||||||||||||||||| ||||||||    
T  44615214 ttttttaagttcactgaataattaatgtatctggattataa 44615254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 279 - 431
Target Start/End: Complemental strand, 6686963 - 6686815
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaatattttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcattta 378  Q
    |||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | || |   | ||| || |||||||||||||||||    
T  6686963 tactccctctggtcctaaatataagagaagaatcttttttaggttcattgaataattaatgtatttggact---acaatgtaaactaaatacatcattta 6686867  T
Q  379 ttcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagta 431  Q
    |||||||||||| |||||| || ||||| |||| || || ||| |||||||||    
T  6686866 ttcaatgaacct-aaaaaaaaaacttcttttatattaagaaccggagggagta 6686815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 431
Target Start/End: Complemental strand, 31586212 - 31586062
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaatattttttat--gttcattgaataattaatgtatctagattataataatatacactaaatacatcatt 376  Q
    |||||| ||| |||||||||||||||||| ||| |||||| |  ||| ||  |||||||||||||| | || || ||||   || ||||| |||||||||    
T  31586212 tactccgtccagtcctaaatataagagaaaaatcttttttttaggtttatgaaataattaatgtatttggactacaata---taaactaa-tacatcatt 31586117  T
Q  377 tattcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagta 431  Q
    |||||||||||| | ||||||||| |||||||||| |||||||| ||||||||||    
T  31586116 tattcaatgaacataaaaaaagaatcttctcttatatttaggactagagggagta 31586062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 278 - 432
Target Start/End: Original strand, 6686814 - 6686964
Alignment:
Q  278 ttactccatccggtcctaaatataagagaagaatattttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcattt 377  Q
    ||||||| |||||| || ||||||| |||||  | ||||||| ||||||||||||| | |||||| ||| ||| | |    ||  | |||||||| | ||    
T  6686814 ttactccctccggttcttaatataaaagaagttttttttttaggttcattgaataaatgatgtatttagtttacattg---tagtccaaatacattaatt 6686910  T
Q  378 attcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagtat 432  Q
    ||||||||||||| ||||||||  |||||||||| ||||||||||||||||||||    
T  6686911 attcaatgaacct-aaaaaagattcttctcttatatttaggaccagagggagtat 6686964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 1941135 - 1941069
Alignment:
Q  362 actaaatacatcatttattcaatgaacctgaaaaaagaaccttctcttat-gtttaggaccagaggg 427  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||||  |||| ||||||||||    
T  1941135 actaaatacatcatttattcaatgaacttgaaaagagaatcttctcttatattttaagaccagaggg 1941069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Complemental strand, 14558351 - 14558316
Alignment:
Q  365 aaatacatcatttattcaatgaacctgaaaaaagaa 400  Q
    |||||||||| |||||||||||||||||||||||||    
T  14558351 aaatacatcaattattcaatgaacctgaaaaaagaa 14558316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 31586073 - 31586126
Alignment:
Q  290 gtcctaaatataagagaagaatatttt-ttatgttcattgaataattaatgtat 342  Q
    |||||||||||||||||||| | |||| ||||||||||||||||| | ||||||    
T  31586073 gtcctaaatataagagaagattctttttttatgttcattgaataaatgatgtat 31586126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 342
Target Start/End: Original strand, 31159108 - 31159136
Alignment:
Q  314 tttttatgttcattgaataattaatgtat 342  Q
    |||||||||||||||||||||||||||||    
T  31159108 tttttatgttcattgaataattaatgtat 31159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 289 - 419
Target Start/End: Original strand, 39217601 - 39217729
Alignment:
Q  289 ggtcctaaatataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaa 387  Q
    ||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||| |   |||  ||||| |||||||||||||||||||||||     
T  39217601 ggtcctaaatataagagaataatctttttttaggttcattgaataattaatgtatctagact---atagcatacattaaatacatcatttattcaatgat 39217697  T
Q  388 cctgaaaaaagaaccttctcttatgtttagga 419  Q
    |||||||||| || ||||| |||| |||||||    
T  39217698 cctgaaaaaataatcttcttttatatttagga 39217729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 286 - 423
Target Start/End: Original strand, 13685612 - 13685750
Alignment:
Q  286 tccggtcctaaatataagagaagaatatttt--ttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaa 383  Q
    |||| ||||||||||| || ||| || ||||  ||| |||| ||||||||||||||||| |  | |||| || |||| |||||||| |||||||||||||    
T  13685612 tccgatcctaaatatatgaaaagtatcttttctttaggttccttgaataattaatgtatttgaactatacta-tataaactaaatatatcatttattcaa 13685710  T
Q  384 tgaacctgaaaaaagaaccttctcttatgtttaggaccag 423  Q
    ||||||| |||| | ||  ||||||||| |||||||||||    
T  13685711 tgaacctaaaaataaaaatttctcttatatttaggaccag 13685750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 13514283 - 13514420
Alignment:
Q  286 tccggtcctaaatataagagaagaatatttt--ttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaa 383  Q
    |||| ||||||||||| || ||| || ||||  ||| |||| ||||||||||||||||| |  | |||| || |||| ||||||||||||||||||||||    
T  13514283 tccgatcctaaatatatgaaaagtatcttttctttaggttccttgaataattaatgtatttgaactatacta-tataaactaaatacatcatttattcaa 13514381  T
Q  384 tgaacctgaaaaaagaaccttctcttatgtttaggacca 422  Q
    ||||| | |||| | ||  ||||||||| ||||||||||    
T  13514382 tgaacttaaaaataaaaatttctcttatatttaggacca 13514420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 13611168 - 13611305
Alignment:
Q  286 tccggtcctaaatataagagaagaatatttt--ttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaa 383  Q
    |||| ||||||||||| || ||| || ||||  ||| |||| ||||||||||||||||| |  | |||| || |||| ||||||||||||||||||||||    
T  13611168 tccgatcctaaatatatgaaaagtatcttttctttaggttccttgaataattaatgtatttgaactatacta-tataaactaaatacatcatttattcaa 13611266  T
Q  384 tgaacctgaaaaaagaaccttctcttatgtttaggacca 422  Q
    ||||| | |||| | ||  ||||||||| ||||||||||    
T  13611267 tgaacttaaaaataaaaatttctcttatatttaggacca 13611305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 897156 - 897091
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaata-ttttttatgttcattgaataattaatgtatc 343  Q
    |||||||||||||||||||||||||| |||| || |||||||  | ||||||||||||||||||||    
T  897156 tactccatccggtcctaaatataagaaaagattatttttttagatacattgaataattaatgtatc 897091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 423
Target Start/End: Complemental strand, 19137556 - 19137418
Alignment:
Q  286 tccggtcctaaatataagagaagaatatttt--ttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaa 383  Q
    |||| ||||||||||| || ||| || ||||  ||| |||| ||||||||||||||||| |  | |||| || |||| |||||||||||| |||||||||    
T  19137556 tccgatcctaaatatacgaaaagtatcttttctttaggttccttgaataattaatgtatttgaactatacta-tataaactaaatacatcgtttattcaa 19137458  T
Q  384 tgaacctgaaaaaagaaccttctcttatgtttaggaccag 423  Q
    ||||||| |||| | ||  ||||||||| |||||| ||||    
T  19137457 tgaacctaaaaagaaaaatttctcttatatttagggccag 19137418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 101494 - 101541
Alignment:
Q  297 atataagagaagaatattttttatgttcattgaataattaatgtatct 344  Q
    |||||||| |||| | ||||||| ||||||||||||||||||||||||    
T  101494 atataagaaaagattcttttttaggttcattgaataattaatgtatct 101541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 13507172 - 13507211
Alignment:
Q  356 atatacactaaatacatcatttattcaatgaacctgaaaa 395  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  13507172 atataaactaaatacatcatttattcaatgaacctaaaaa 13507211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 13650961 - 13651028
Alignment:
Q  356 atatacactaaatacatcatttattcaatgaacctgaaaaaagaaccttctcttatgtttaggaccag 423  Q
    ||||| |||||||||||| |||||||||||||||| |||| | ||  |||||| || |||||||||||    
T  13650961 atataaactaaatacatcgtttattcaatgaacctaaaaataaaaatttctctgatatttaggaccag 13651028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 37925807 - 37925841
Alignment:
Q  312 attttttatgttcattgaataattaatgtatctag 346  Q
    |||||||||||||||||||||| ||||||||||||    
T  37925807 attttttatgttcattgaataactaatgtatctag 37925841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 40873617 - 40873555
Alignment:
Q  294 taaatataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataata 355  Q
    |||||||||||||| |||||||||| | |||||||||||||| ||  |||||||| |||||||    
T  40873617 taaatataagagaataatatttttttaggttcattgaataatgaacatatctagactataata 40873555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 31533420 - 31533488
Alignment:
Q  287 ccggtcctaaatataagagaagaata-ttttttatgttcattgaataattaatgtatctagattataata 355  Q
    |||||||||||||||| | ||||| | ||||||| ||| ||| |||||||||||||| ||||||||||||    
T  31533420 ccggtcctaaatataaaa-aagaagaattttttaggtttattaaataattaatgtatatagattataata 31533488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 12163570 - 12163522
Alignment:
Q  278 ttactccatccggtcctaaatataagagaagaatattttttatgttcat 326  Q
    ||||||| ||| |||||||| ||||||||||||| ||||||| ||||||    
T  12163570 ttactccctccagtcctaaacataagagaagaattttttttacgttcat 12163522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 6380529 - 6380654
Alignment:
Q  294 taaatataagagaagaatatttttt-atgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctga 392  Q
    |||||||||||||||| | |||||| | ||| ||||||| |||||||||| ||||||||||||   || ||||||||||| ||||||||||||||||| |    
T  6380529 taaatataagagaagattttttttttaagtttattgaattattaatgtatatagattataata---taaactaaatacattatttattcaatgaacctaa 6380625  T
Q  393 aaaaagaaccttctcttatgtttaggacc 421  Q
     ||||||| |||||||||| |||| ||||    
T  6380626 taaaagaatcttctcttatatttaagacc 6380654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 277 - 432
Target Start/End: Original strand, 6761031 - 6761184
Alignment:
Q  277 attactccatccggtcctaaatataagagaagaata-ttttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcat 375  Q
    |||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| | || |   | ||| || ||||||||||| ||    
T  6761031 attactctctccggtcctaaatataagagaagaatatttttttaggttcattgaataattaatatatttggact---acaatgtaaactaaatacattat 6761127  T
Q  376 ttattcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagtat 432  Q
    ||||||||||||| | |||||| || ||| |||| | || | || ||||||||||||    
T  6761128 ttattcaatgaacttaaaaaaaaaatcttatcttgtattaaagatcagagggagtat 6761184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 393
Target Start/End: Original strand, 26152104 - 26152203
Alignment:
Q  292 cctaaatataagagaagaatat-tttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacct 390  Q
    |||||||||||||||| ||| | |||||| |||||||||||||||||||||  |||| |   | || ||  | |||||||||||||||||||||||||||    
T  26152104 cctaaatataagagaataatctgtttttaggttcattgaataattaatgtagatagact---aaaacatgaattaaatacatcatttattcaatgaacct 26152200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 5004061 - 5003993
Alignment:
Q  326 ttgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaaaaa 397  Q
    ||||||||||||||||||||  ||||||||   || ||||||||||||| ||||||||||||  ||||||||    
T  5004061 ttgaataattaatgtatctaatttataata---tagactaaatacatcagttattcaatgaaattgaaaaaa 5003993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 4902499 - 4902577
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaata--ttttttatgttcattgaataattaatgtatctagattataata 355  Q
    |||||| ||| ||||||||||||||| ||  |||  ||||||| ||||||| |||||||||||||| |||| |||||||    
T  4902499 tactccctcctgtcctaaatataagaaaaatataatttttttaggttcattaaataattaatgtatttagactataata 4902577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 419
Target Start/End: Complemental strand, 20511563 - 20511439
Alignment:
Q  294 taaatataagagaagaatattttttat--gttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctg 391  Q
    |||||| ||||||| |||||||||| |  ||| ||| |||  ||||||||| ||||||||||||   || ||||||||||| |||||| |||| || ||     
T  20511563 taaatacaagagaataatattttttttaggtttattaaatttttaatgtatttagattataata---taaactaaatacattatttatacaataaatcta 20511467  T
Q  392 aaaaaagaaccttctcttatgtttagga 419  Q
    |||||| || ||||||| || |||||||    
T  20511466 aaaaaataatcttctctcatatttagga 20511439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 42563850 - 42563892
Alignment:
Q  377 tattcaatgaacctgaaaaaagaaccttctcttatgtttagga 419  Q
    |||| ||||||||||||||||||| |||||||||| |||||||    
T  42563850 tattaaatgaacctgaaaaaagaatcttctcttatatttagga 42563892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 1023731 - 1023764
Alignment:
Q  367 atacatcatttattcaatgaacctgaaaaaagaa 400  Q
    |||||||||||||||||||||||| |||||||||    
T  1023731 atacatcatttattcaatgaacctaaaaaaagaa 1023764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 6380654 - 6380590
Alignment:
Q  289 ggtcctaaatataagagaagaatatttt-ttatgttcattgaataattaatgtatctagattata 352  Q
    |||| |||||||||||||||| | |||| ||| ||||||||||||| |||||||| ||| |||||    
T  6380654 ggtcttaaatataagagaagattcttttattaggttcattgaataaataatgtatttagtttata 6380590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 432
Target Start/End: Complemental strand, 34308138 - 34307986
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaa--tattttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatt 376  Q
    |||||| ||||||||||||||||| |||||||  | ||||||| ||||||| ||| ||||||| || | || |   |||||||| |||||||| ||||||    
T  34308138 tactccctccggtcctaaatataaaagaagaatcttttttttaggttcattaaattattaatgaatttggact---ataatataaactaaatatatcatt 34308042  T
Q  377 tattcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagtat 432  Q
    |||||||||||||| ||||| ||| |||||||||  ||||||||| |||| |||||    
T  34308041 tattcaatgaacctaaaaaatgaatcttctcttacatttaggaccggaggaagtat 34307986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 411
Target Start/End: Original strand, 39497998 - 39498126
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaatattttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcattta 378  Q
    |||||| |||| |||||||||||| ||||||| ||||| || ||||||| |||||||||||||| | || |   | ||| || |||||||||| ||||||    
T  39497998 tactccctccgatcctaaatataaaagaagaa-attttgtaggttcattaaataattaatgtatttggact---acaatgtagactaaatacaacattta 39498093  T
Q  379 ttcaatgaacctgaaaaaagaaccttctcttat 411  Q
    || | ||||||| | ||||||| ||||| ||||    
T  39498094 tttattgaacctaataaaagaatcttctattat 39498126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 45362119 - 45362054
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaatattttttatgttcattgaataattaatgtatct 344  Q
    |||||| |||||||  |||||||||| |||| | ||||||| ||| ||||||||||||||||||||    
T  45362119 tactccctccggtctcaaatataagaaaagattcttttttaggttaattgaataattaatgtatct 45362054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 45361968 - 45362036
Alignment:
Q  277 attactccatccggtcctaaatataagagaagaat-attttttatgttcattgaataattaatgtatct 344  Q
    |||||||| |||||||  |||||||||| |||| | |||||||| ||||||||| ||||||||||||||    
T  45361968 attactccctccggtctcaaatataagaaaagattcattttttaagttcattgagtaattaatgtatct 45362036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 19996070 - 19996112
Alignment:
Q  313 ttttttatgttcattgaataattaatgtatctagattataata 355  Q
    |||||||  |||||||||||||| |||||||||||||||||||    
T  19996070 ttttttagattcattgaataattgatgtatctagattataata 19996112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 46220365 - 46220431
Alignment:
Q  279 tactccatccggtcctaaatataagagaagaat-attttttatgttcattgaataattaatgtatct 344  Q
    |||||||||||||||| | ||||||| || | | ||||||||| ||||| |||||||||||||||||    
T  46220365 tactccatccggtccttattataagaaaaaattgattttttatattcatagaataattaatgtatct 46220431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 27302192 - 27302120
Alignment:
Q  314 tttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacc 389  Q
    |||||| |||||| |||||||||||||||||| ||| ||  |||||| |||| |||||||| |||| |||||||||    
T  27302192 tttttaggttcatagaataattaatgtatcta-attgta--aatatagactagatacatcacttatacaatgaacc 27302120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 34307994 - 34308042
Alignment:
Q  286 tccggtcctaaatataagagaagaat-attttttatgttcattgaataa 333  Q
    ||||||||||||| |||||||||| | |||||||| |||||||||||||    
T  34307994 tccggtcctaaatgtaagagaagattcattttttaggttcattgaataa 34308042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 44664215 - 44664247
Alignment:
Q  312 attttttatgttcattgaataattaatgtatct 344  Q
    |||||||| ||||||||||||||||||||||||    
T  44664215 attttttaggttcattgaataattaatgtatct 44664247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 424
Target Start/End: Original strand, 10351000 - 10351122
Alignment:
Q  298 tataagagaagaatat-tttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaaaa 396  Q
    ||||| |||||||| | |||||| ||||||||||||||| ||||||||| | |   |||||||| | ||||| ||||||| |||||||||||||  ||||    
T  10351000 tataaaagaagaatctatttttacgttcattgaataattcatgtatctaaact---ataatataaattaaatgcatcattaattcaatgaacct--aaaa 10351094  T
Q  397 agaaccttctcttatgtttaggaccaga 424  Q
    | || |||||||||||||||||||||||    
T  10351095 aaaatcttctcttatgtttaggaccaga 10351122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 286 - 431
Target Start/End: Original strand, 2324574 - 2324712
Alignment:
Q  286 tccggtcctaaatataagagaagaat-attttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaat 384  Q
    |||||||||||||||||||||| |||  ||||||| ||| ||||||| |||||||||| | || |   | ||| || |||||||| || |||||||||||    
T  2324574 tccggtcctaaatataagagaaaaatctttttttaggtttattgaattattaatgtatttggact---acaatgtaaactaaatatattatttattcaat 2324670  T
Q  385 gaacctgaaaaaagaaccttctcttatgtttaggaccagagggagta 431  Q
    |||||| ||| ||||| |||||||||     ||||||||||||||||    
T  2324671 gaacctaaaataagaatcttctctta-----aggaccagagggagta 2324712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 39998168 - 39998238
Alignment:
Q  322 ttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctga 392  Q
    ||||||||| |||| |||||||||| |||| |||||||| ||||||||||| | |||||||||||| ||||    
T  39998168 ttcattgaacaatttatgtatctaggttattataatatagactaaatacataagttattcaatgaatctga 39998238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 379
Target Start/End: Complemental strand, 27587362 - 27587297
Alignment:
Q  311 tattttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttat 379  Q
    ||||||||| |||||||||||||||||||||||| | |||||  ||||||||||| |||||||||||||    
T  27587362 tattttttaggttcattgaataattaatgtatctcg-ttata--aatatacactagatacatcatttat 27587297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 432
Target Start/End: Complemental strand, 24253051 - 24252992
Alignment:
Q  373 catttattcaatgaacctgaaaaaagaaccttctcttatgtttaggaccagagggagtat 432  Q
    ||||||||| |||||| ||||||||||| ||| |||||| ||||||||| ||| ||||||    
T  24253051 catttattctatgaacttgaaaaaagaatcttatcttatatttaggacccgagcgagtat 24252992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 343
Target Start/End: Original strand, 15844120 - 15844150
Alignment:
Q  313 ttttttatgttcattgaataattaatgtatc 343  Q
    |||||||||||||||||||||||||||||||    
T  15844120 ttttttatgttcattgaataattaatgtatc 15844150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 13264632 - 13264588
Alignment:
Q  353 ataatatacactaaatacatcatttattcaatgaacctgaaaaaa 397  Q
    |||||||| ||| ||||||||||||||||||| || |||||||||    
T  13264632 ataatataaactcaatacatcatttattcaataaatctgaaaaaa 13264588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 342
Target Start/End: Original strand, 22048848 - 22048876
Alignment:
Q  314 tttttatgttcattgaataattaatgtat 342  Q
    |||||||||||||||||||||||||||||    
T  22048848 tttttatgttcattgaataattaatgtat 22048876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 395
Target Start/End: Complemental strand, 52136814 - 52136734
Alignment:
Q  312 attttttatgttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaaa 395  Q
    |||||||  |||||| ||||||||||||||||| | ||||||  ||||| ||||||||||||| |||  |||||||||| ||||    
T  52136814 atttttttagttcatagaataattaatgtatcttg-ttataa--atatagactaaatacatcacttacacaatgaacctaaaaa 52136734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 140722 - 140789
Alignment:
Q  356 atatacactaaatacatcatttattcaatgaacctgaaaaaagaaccttctcttatgtttaggaccag 423  Q
    ||||| |||||||||||| |||||||||||||||| |||| | ||  |||||| || |||||||||||    
T  140722 atataaactaaatacatcgtttattcaatgaacctaaaaataaaaatttctctgatatttaggaccag 140789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 394
Target Start/End: Complemental strand, 20180 - 20111
Alignment:
Q  322 ttcattgaataattaatgtatctagattataataatatacactaaatacatcatttattcaatgaacctgaaa 394  Q
    ||||||||||||| |||||||||||  ||||| ||||||||  |||||||||| | |||||||||| ||||||    
T  20180 ttcattgaataatcaatgtatctagtctataa-aatataca--aaatacatcaatcattcaatgaatctgaaa 20111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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