View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_16 (Length: 437)
Name: NF15205_low_16
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_16 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 3877753 - 3878164
Alignment:
| Q |
18 |
aaggatttccatcaataggaagaaaattcaataacattattttatttttatgaaagttgtcatggtagaaaattcaataaccaatttttgtttgatgtgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3877753 |
aaggatttccatcaataggaagaaaattcaataacattattttatttttatgaaagttgtcatggtagaaaattcaataaccaatttt-gtttgatgtgt |
3877851 |
T |
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| Q |
118 |
tctaatttcaagatttgtgaatgtaattttgcagtttgtgatggttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3877852 |
tctaatttcaagatttgtgaatgtaattttgcagtttgtgatggttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgca |
3877951 |
T |
|
| Q |
218 |
tatggtgaactagtttcaatgggtggcattaattcagaagtgaagaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaa |
317 |
Q |
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| T |
3877952 |
tatggtgaactagtttcaatgggtggcattaattcagaagtgaagaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaa |
3878051 |
T |
|
| Q |
318 |
gaacaagattttttcttaaagtctttgacaccttggttctaaaagttgaaaataggtccaagctgtagtgatannnnnnnatttagtcttgatttgtcac |
417 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3878052 |
gaacaagattttttctcaaagtctttgacaccttggttctaaaagttgaaaataggtccaagctgtagtgatatttttttatttagtcttgatttgtcac |
3878151 |
T |
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| Q |
418 |
aattcctatgcta |
430 |
Q |
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| T |
3878152 |
aattcctatgcta |
3878164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0562 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 8590 - 9000
Alignment:
| Q |
18 |
aaggatttccatcaataggaagaaaattcaataacattattttatttttatgaaagttgtcatggtagaaaattcaataaccaatttttgtttgatgtgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8590 |
aaggatttccatcaataggaagaaaattcaataacattattttatttt-atgaaagttgtcatggtagaaaattcaataaccaatttt-gtttgatgtgt |
8687 |
T |
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| Q |
118 |
tctaatttcaagatttgtgaatgtaattttgcagtttgtgatggttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgca |
217 |
Q |
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| T |
8688 |
tctaatttcaagatttgtgaatgtaattttgcagtttgtgatggttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgca |
8787 |
T |
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| Q |
218 |
tatggtgaactagtttcaatgggtggcattaattcagaagtgaagaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaa |
317 |
Q |
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| T |
8788 |
tatggtgaactagtttcaatgggtggcattaattcagaagtgaagaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaa |
8887 |
T |
|
| Q |
318 |
gaacaagattttttcttaaagtctttgacaccttggttctaaaagttgaaaataggtccaagctgtagtgatannnnnnnatttagtcttgatttgtcac |
417 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8888 |
gaacaagattttttctcaaagtctttgacaccttggttctaaaagttgaaaataggtccaagctgtagtgatatttttttatttagtcttgatttgtcac |
8987 |
T |
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| Q |
418 |
aattcctatgcta |
430 |
Q |
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| T |
8988 |
aattcctatgcta |
9000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 143 - 345
Target Start/End: Complemental strand, 25918268 - 25918066
Alignment:
| Q |
143 |
attttgcagtttgtgatggttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtg |
242 |
Q |
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|||||||||||||||||||| ||||||| || || |||||||| |||||| ||||||||||||||||||| |||| |||| || | |||||||||| |
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| T |
25918268 |
attttgcagtttgtgatggtcctattgaaatcatctgtgccaatatcatttgaaggtaacaaagaaccagctgcttatgctgaaataatatcaatgggtg |
25918169 |
T |
|
| Q |
243 |
gcattaattcagaagtgaagaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttcttaaagtctt |
342 |
Q |
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| || || |||||||||||||||||| || ||||||||| || || ||| | ||||| || ||||| ||||||||| | ||||| ||||||||||| |
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| T |
25918168 |
gtataaacaaagaagtgaagaagaatcttattgctaccattggtactatattgcagtccaagctttctatcccaagaacacgttttttccttaaagtctt |
25918069 |
T |
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| Q |
343 |
tga |
345 |
Q |
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||| |
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| T |
25918068 |
tga |
25918066 |
T |
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