View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_18 (Length: 405)
Name: NF15205_low_18
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 33969180 - 33968837
Alignment:
| Q |
1 |
ttctgggtccaattgttccagtctcagaagcaaaacagggttctccaacaggattaccctggttttcaacacacgccaatctcacatgagaattacatgg |
100 |
Q |
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| T |
33969180 |
ttctgggtccaattgttccagtctcagaagcaaaacagtgttctccaacaggattaccctggttttcaacacacgccaatctcacatgagaattacatgg |
33969081 |
T |
|
| Q |
101 |
atagaactcaggaaatggagacagtatggtttccactacacaccaaatcaatccaaaaatgtttgatcgttatgtgtggaaaatctgcagaaaaaacaaa |
200 |
Q |
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| T |
33969080 |
atagaactcaggaaatggagacagtatggtttccactacacaccaaatcaatccaaaaatgtt-gatcgttatgtgtggaaaatctgcagaaaaaacaaa |
33968982 |
T |
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| Q |
201 |
cttggactatccttgtatttaatggttgcagtgccaaatttctgatcagattgtatgttgtgtttgttgtttgtagtgctttgatgttgtatcaggaaat |
300 |
Q |
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| T |
33968981 |
cttggactatccttgtatttaatggttgcagtgccaaatttctgatcagattgtatgttgtgtttgttgtttgtagtgctttgatgttgtatcaggaaat |
33968882 |
T |
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| Q |
301 |
agccaatgcattaacgttaatgcaacatgttagatctctaattta |
345 |
Q |
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| T |
33968881 |
agccaatgcattaacgttaatgcaacatgttagatctctaattta |
33968837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 314 - 385
Target Start/End: Complemental strand, 33968837 - 33968766
Alignment:
| Q |
314 |
acgttaatgcaacatgttagatctctaatttattgtccgtaaaatagtttatgaaaagacaaaaatggtgaa |
385 |
Q |
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| T |
33968837 |
acgttaatgcaacatgttagatctctaatttattgtcagtaaaatagtttatgaaaagacaaaaatggtgaa |
33968766 |
T |
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