View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_20 (Length: 371)
Name: NF15205_low_20
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 35804009 - 35803669
Alignment:
| Q |
10 |
aagaatattagaaaacaagcttttgtaaagggattttaagaaataaaaccacattatcaaaaggcaagttaaagagccttaaaagttgcaactgatnnnn |
109 |
Q |
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| T |
35804009 |
aagaaaattagaaaacaaacttttgtaaagggattttaagaaataaaaccacattatcaaaaggcaagttaaagagccttaaaaattgcaactgataaaa |
35803910 |
T |
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| Q |
110 |
nnnnnntgataacaaaaataatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaaaatgataaatc |
209 |
Q |
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| T |
35803909 |
aaaa--tgacaacaaaaataatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaaaatgataaatc |
35803812 |
T |
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| Q |
210 |
tggaattgagtatagggagtagggtttgcacatcatcttccaatatatatat------agagagagcagcattccggacagaaaccctaaacgtactctt |
303 |
Q |
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| T |
35803811 |
tggaattgagtatagggagtagggtttgcacatcatcttccaatatatatatatatagagagagagcagcattccggacagaaaccctaaacgtactctt |
35803712 |
T |
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| Q |
304 |
tcttccttacatttcgaaatccctaattcagcagcgacaacat |
346 |
Q |
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| T |
35803711 |
tcttccttacattttgaaatccctaattcagcagcgacaacat |
35803669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 267 - 350
Target Start/End: Original strand, 35851167 - 35851255
Alignment:
| Q |
267 |
gagcagcattccggacagaaacccta-----aacgtactctttcttccttacatttcgaaatccctaattcagcagcgacaacatgtcc |
350 |
Q |
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| T |
35851167 |
gagcagcattccggagagaaaccctaacctaaacgtactctttcttccatacatttccaaaaccctaattcagcagtgacaacatgtcc |
35851255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 55695696 - 55695874
Alignment:
| Q |
16 |
attagaaaacaagcttttgtaaagggattttaagaaataaaaccacattatcaaaaggcaagttaaagagccttaaaagt-tgcaactgatnnnnnnnnn |
114 |
Q |
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| T |
55695696 |
attagaaaacatgtttttggaaagggattttatgaaataaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactaatg-------- |
55695787 |
T |
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| Q |
115 |
ntgataacaaaaataatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaa-aatgataa |
206 |
Q |
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| T |
55695788 |
------acaaaaataatgcaattttgatttaaaaagttggcttgaattttgtttttctcttctgaaaggaaaggacaaaagcaagaatgataa |
55695874 |
T |
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