View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15205_low_24 (Length: 339)

Name: NF15205_low_24
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15205_low_24
NF15205_low_24
[»] chr7 (20 HSPs)
chr7 (21-332)||(1980897-1981208)
chr7 (21-216)||(90782-90975)
chr7 (222-310)||(25842504-25842592)
chr7 (224-332)||(17811592-17811702)
chr7 (224-310)||(24989549-24989635)
chr7 (226-310)||(8304354-8304438)
chr7 (231-310)||(4247624-4247703)
chr7 (224-332)||(23618204-23618314)
chr7 (224-310)||(5058796-5058882)
chr7 (224-332)||(5715529-5715635)
chr7 (223-305)||(8572410-8572491)
chr7 (223-304)||(8253958-8254039)
chr7 (226-332)||(20570662-20570770)
chr7 (224-305)||(44944620-44944701)
chr7 (231-310)||(27221682-27221762)
chr7 (227-302)||(8629506-8629581)
chr7 (223-306)||(11326555-11326638)
chr7 (240-310)||(9685085-9685155)
chr7 (281-310)||(26565380-26565409)
chr7 (276-304)||(23618334-23618362)
[»] chr4 (13 HSPs)
chr4 (223-332)||(55476232-55476343)
chr4 (223-332)||(9770356-9770467)
chr4 (227-304)||(8409790-8409867)
chr4 (222-310)||(5375933-5376021)
chr4 (224-310)||(36121091-36121177)
chr4 (225-310)||(23064737-23064822)
chr4 (231-310)||(9911193-9911272)
chr4 (223-310)||(8010914-8010997)
chr4 (233-290)||(13023846-13023903)
chr4 (222-310)||(6346728-6346816)
chr4 (223-310)||(7452773-7452860)
chr4 (240-310)||(13551463-13551533)
chr4 (270-310)||(8367470-8367510)
[»] chr5 (14 HSPs)
chr5 (224-310)||(15051872-15051958)
chr5 (223-310)||(41427687-41427774)
chr5 (225-303)||(18843990-18844068)
chr5 (231-332)||(19579187-19579291)
chr5 (224-310)||(20321211-20321297)
chr5 (224-310)||(41688441-41688527)
chr5 (223-310)||(22645501-22645588)
chr5 (223-310)||(43235136-43235223)
chr5 (222-300)||(6852339-6852417)
chr5 (224-310)||(27339962-27340048)
chr5 (231-302)||(18051315-18051386)
chr5 (223-276)||(13341471-13341524)
chr5 (254-310)||(24648277-24648333)
chr5 (224-264)||(34702982-34703022)
[»] scaffold2084 (1 HSPs)
scaffold2084 (221-310)||(96-185)
[»] scaffold0079 (1 HSPs)
scaffold0079 (221-310)||(14698-14787)
[»] chr3 (17 HSPs)
chr3 (224-310)||(18014259-18014345)
chr3 (222-332)||(8560230-8560342)
chr3 (224-310)||(24619972-24620058)
chr3 (229-310)||(3041491-3041572)
chr3 (223-332)||(8592173-8592284)
chr3 (223-310)||(22971077-22971163)
chr3 (223-305)||(20766675-20766757)
chr3 (223-304)||(9169869-9169950)
chr3 (225-310)||(19348821-19348906)
chr3 (223-306)||(28746048-28746131)
chr3 (223-288)||(24649523-24649588)
chr3 (224-302)||(22355841-22355919)
chr3 (233-307)||(21553677-21553749)
chr3 (222-310)||(29067545-29067632)
chr3 (231-301)||(39428184-39428254)
chr3 (223-332)||(27090686-27090797)
chr3 (244-304)||(30727654-30727714)
[»] chr2 (14 HSPs)
chr2 (222-332)||(20033995-20034107)
chr2 (234-332)||(27523881-27523981)
chr2 (222-332)||(974582-974695)
chr2 (222-332)||(7302026-7302138)
chr2 (231-310)||(21869103-21869182)
chr2 (223-332)||(19262090-19262201)
chr2 (222-332)||(20063967-20064079)
chr2 (231-332)||(31237758-31237861)
chr2 (224-310)||(25538920-25539006)
chr2 (224-310)||(30433083-30433169)
chr2 (224-310)||(1405051-1405137)
chr2 (223-310)||(19245857-19245944)
chr2 (270-309)||(36430117-36430156)
chr2 (249-309)||(13502473-13502533)
[»] chr1 (18 HSPs)
chr1 (233-310)||(16125239-16125316)
chr1 (226-332)||(17197306-17197414)
chr1 (215-332)||(25146534-25146653)
chr1 (223-310)||(13100458-13100545)
chr1 (224-332)||(14074258-14074368)
chr1 (232-310)||(9954816-9954894)
chr1 (225-332)||(21846050-21846159)
chr1 (223-310)||(9351837-9351924)
chr1 (223-310)||(17055694-17055780)
chr1 (226-310)||(12002638-12002720)
chr1 (241-310)||(19009740-19009809)
chr1 (223-332)||(23528900-23529011)
chr1 (228-310)||(9128616-9128699)
chr1 (231-310)||(17869532-17869611)
chr1 (231-310)||(8773536-8773612)
chr1 (223-274)||(9954770-9954821)
chr1 (223-310)||(27502129-27502216)
chr1 (270-310)||(9321556-9321596)
[»] chr8 (18 HSPs)
chr8 (222-310)||(40541593-40541681)
chr8 (228-310)||(16752291-16752373)
chr8 (222-310)||(2040387-2040475)
chr8 (223-332)||(7489057-7489168)
chr8 (222-310)||(11879868-11879956)
chr8 (222-310)||(11897284-11897372)
chr8 (231-310)||(45403297-45403376)
chr8 (224-310)||(24414062-24414148)
chr8 (239-318)||(19704247-19704328)
chr8 (226-310)||(5922316-5922400)
chr8 (247-332)||(7262006-7262093)
chr8 (224-310)||(17647265-17647351)
chr8 (224-310)||(19335244-19335329)
chr8 (224-310)||(23142442-23142528)
chr8 (269-310)||(15294937-15294978)
chr8 (269-310)||(15475306-15475347)
chr8 (270-310)||(27836120-27836160)
chr8 (224-300)||(31424442-31424518)
[»] chr6 (17 HSPs)
chr6 (223-332)||(7223759-7223870)
chr6 (223-332)||(27890630-27890741)
chr6 (223-310)||(22498214-22498301)
chr6 (222-332)||(17103439-17103551)
chr6 (223-332)||(19748577-19748688)
chr6 (222-332)||(11327335-11327447)
chr6 (222-332)||(17543503-17543615)
chr6 (223-332)||(17250300-17250412)
chr6 (223-310)||(21354943-21355030)
chr6 (231-310)||(26053078-26053157)
chr6 (231-310)||(26073131-26073210)
chr6 (231-310)||(27614438-27614517)
chr6 (224-308)||(3573674-3573759)
chr6 (222-332)||(7918123-7918235)
chr6 (222-332)||(15527883-15527995)
chr6 (223-332)||(27233073-27233184)
chr6 (231-302)||(31108431-31108502)
[»] scaffold0526 (1 HSPs)
scaffold0526 (223-310)||(8424-8511)
[»] scaffold0186 (1 HSPs)
scaffold0186 (216-310)||(8709-8803)
[»] scaffold0017 (1 HSPs)
scaffold0017 (222-310)||(38300-38387)
[»] scaffold0182 (1 HSPs)
scaffold0182 (229-302)||(24662-24735)
[»] scaffold0016 (1 HSPs)
scaffold0016 (223-332)||(56199-56310)
[»] scaffold0061 (1 HSPs)
scaffold0061 (223-310)||(76083-76169)
[»] scaffold0027 (1 HSPs)
scaffold0027 (277-310)||(132943-132976)
[»] scaffold0417 (1 HSPs)
scaffold0417 (278-310)||(7284-7316)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 21 - 332
Target Start/End: Original strand, 1980897 - 1981208
Alignment:
Q  21 cctaaaatcgttttgtattctagatatttgttggttgttcaaaactattatcatttacctagtagtatgtaagatggatattggtttgtcttgcatttaa 120  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1980897 cctaaaatcgttttgtattctagatatttgttgtttgttcaaaactattatcatttacctagtagtatgtaagatggatattggtttgtcttgcatttaa 1980996  T
Q  121 atgttagataaacaataaaagaagaaaagaggactataattgtttggatcgttgtgttttatatatttgaagtaaagtcagaatctctaacctctttgtg 220  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1980997 atgttaaataaacaataaaagaagaaaagaggactataattttttggatcgttgtgttttatatatttgaagtaaagtcagaatctctaacctctttgtg 1981096  T
Q  221 tccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggattactcaaggtc 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1981097 tccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagaaaaattggaactcgtaaaatcgtaatcaaaatcgaaggattactcaaggtc 1981196  T
Q  321 tttagtataatc 332  Q
    ||||||| ||||    
T  1981197 tttagtagaatc 1981208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 90782 - 90975
Alignment:
Q  21 cctaaaatcgttttgtattctagatatttgttggttgttcaaaactattatcatttacctagtagtatgtaagatggatattggtttgtcttgcatttaa 120  Q
    ||||| || |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  90782 cctaagattgttttgtattctagatatttgttgtttgctcaagactattatcatttacctagtagtatgtgagatggatataggtttgtcttgcatttaa 90881  T
Q  121 atgttagataaacaataaaagaagaaaagaggactataattgtttggatcgttgtgttttatatatttgaagtaaagtcagaatctctaacctctt 216  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||  |||||||||||||||    
T  90882 atgttaaataaacaataaaagaagaaaagaggactataattttttggatcgctgttttttatatatttgaagtaaagtc--aatctctaacctctt 90975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 25842504 - 25842592
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||| | ||||||    
T  25842504 ccaaggttatcaaaattgggactttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaattggaggatt 25842592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 17811702 - 17811592
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtct 321  Q
    |||||| |||||||||||||||||||||| ||| ||||||| ||| ||||| |||| ||||||||||| ||||||||||||| ||  |||||||||| ||    
T  17811702 aaggttgtcaaaatcgggactttacttcaggtcaaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaagattttactcaaggact 17811603  T
Q  322 ttagtataatc 332  Q
    || ||| ||||    
T  17811602 tttgtagaatc 17811592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 24989549 - 24989635
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| |||||||||||||||||||| | ||||||||||| ||  ||||| |||||||||||||| | ||||||||||||||||||    
T  24989549 aaggttgtcaaaatcgggactttactttaggtcgaaagggaataacaaaatcgggactcgtaaaatggcaatcaaaatcgaaggatt 24989635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 8304438 - 8304354
Alignment:
Q  226 ggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||| ||||||||| ||||||||||||||||||||| || ||| ||||| | |||||||||||||  ||||||||||||||||||    
T  8304438 ggttgtcaaaatcgagactttacttcaagtcgaaagagagtagcaaaatcgcgactcgtaaaatcacaatcaaaatcgaaggatt 8304354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 4247703 - 4247624
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| |||||||||||||||||||||||||| ||  |||||||||| ||||||||||| ||||||| || |||||||    
T  4247703 tcaaaattgggactttacttcaagtcgaaagggaatacaaaaattgggattcgtaaaatcgcaatcaaattcaaaggatt 4247624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 23618204 - 23618314
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtct 321  Q
    |||||||||||||||  |||||||||| |||| |||||||| ||| ||||| |||||||  ||||||| |||||||||||||| |  |||||||||| ||    
T  23618204 aaggttatcaaaatcaagactttactttaagttgaaagggagtagcaaaatcgggactccgaaaatcgcaatcaaaatcgaagaattttactcaaggact 23618303  T
Q  322 ttagtataatc 332  Q
    || ||| ||||    
T  23618304 tttgtagaatc 23618314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 5058882 - 5058796
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| ||||||||||||||||||||||  || ||||||| ||| ||||| || | ||||||||| | ||||||||||||||||||    
T  5058882 aaggttgtcaaaatcgggactttacttcagatcaaaagggaatagcaaaatcggaattcgtaaaattgcaatcaaaatcgaaggatt 5058796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 5715635 - 5715529
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtct 321  Q
    |||||| |||||||||||||||||||    ||||||||| | ||| ||||| |||||||||||||||| |||||||||||| |||  |||||||||| ||    
T  5715635 aaggttgtcaaaatcgggactttact----gtcgaaaggaaatagaaaaatcgggactcgtaaaatcgcaatcaaaatcgagggattttactcaaggact 5715540  T
Q  322 ttagtataatc 332  Q
    || ||| ||||    
T  5715539 tttgtagaatc 5715529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 8572491 - 8572410
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaa 305  Q
    ||||||| ||||||| |||||||||  ||||||||||||||| |||||| |||||||||| | |||||| |||||||||||||    
T  8572491 caaggttgtcaaaattgggactttatctcaagtcgaaagggaatagtaatattgggactc-ttaaatcgcaatcaaaatcgaa 8572410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 304
Target Start/End: Original strand, 8253958 - 8254039
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcga 304  Q
    ||||||||||||||| |  ||||||||| || |||||||||| ||| ||||| | |||||||||||||| ||||||||||||    
T  8253958 caaggttatcaaaattgatactttactttaaatcgaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaatcga 8254039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 20570662 - 20570770
Alignment:
Q  226 ggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtcttt 323  Q
    |||| |||||||||||||| ||||||| || |||||||| ||  ||||||| ||||| |||||||| ||||||||| ||| ||  |||||||||| ||||    
T  20570662 ggttgtcaaaatcgggactctacttcaggttgaaagggaataacaaaattgagactcataaaatcgcaatcaaaattgaaagattttactcaaggacttt 20570761  T
Q  324 agtataatc 332  Q
     ||| ||||    
T  20570762 tgtagaatc 20570770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 44944620 - 44944701
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaa 305  Q
    |||||| ||||||||||||||||||||||  |||||||| | ||| |||   |||||||||||||||| ||| |||||||||    
T  44944620 aaggttgtcaaaatcgggactttacttcagatcgaaaggaaatagcaaatgcgggactcgtaaaatcgcaattaaaatcgaa 44944701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 27221762 - 27221682
Alignment:
Q  231 tcaaaatcgggactttacttcaag-tcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||||||||  || ||||||| |  ||| ||||| |||| ||||||||||| ||||||||||||||||||    
T  27221762 tcaaaatcgggactttacttttaggtcgaaagagtatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggatt 27221682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 8629506 - 8629581
Alignment:
Q  227 gttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatc 302  Q
    ||||| ||||||||||||| |||| | || |||||||| ||||||||||||||||| ||||| || ||||| ||||    
T  8629506 gttataaaaatcgggacttcactttaggttgaaagggaatagtaaaattgggactcataaaaacgcaatcacaatc 8629581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 11326638 - 11326555
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaag 306  Q
    ||||||| |||||||| | |||||| |||| || ||||| || ||| ||||||||||||| |||||||  ||||||||| ||||    
T  11326638 caaggttgtcaaaatcagaactttatttcaggtggaaagagaatagcaaaattgggactcttaaaatcacaatcaaaattgaag 11326555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 9685085 - 9685155
Alignment:
Q  240 ggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||  ||||||| ||| ||| |||||   |||||||||||||| ||| ||||||||||||||    
T  9685085 ggactttacttctggtcgaaaaggaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggatt 9685155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 26565380 - 26565409
Alignment:
Q  281 tcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||||||||||||||||||    
T  26565380 tcgtaaaatcgtaatcaaaatcgaaggatt 26565409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 23618334 - 23618362
Alignment:
Q  276 gggactcgtaaaatcgtaatcaaaatcga 304  Q
    |||||||||||||||||||||||||||||    
T  23618334 gggactcgtaaaatcgtaatcaaaatcga 23618362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 55476343 - 55476232
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||| ||||||||||||||||  |||||||||| |    
T  55476343 caaggttatcaaaatcgggactttacttcaagtcgaaagggagtaataaaatcggtactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggac 55476244  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  55476243 ttttgtagaatc 55476232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 9770467 - 9770356
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| |||||||||||||||||||| | ||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||  ||||||||||||    
T  9770467 caaggttgtcaaaatcgggactttactttaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggtc 9770368  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  9770367 ttttgtagaatc 9770356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 8409867 - 8409790
Alignment:
Q  227 gttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcga 304  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||||| || |  |||||||||||||||||||||    
T  8409867 gttatcaaaatcgggactttacttcaagttgaaagggagtagcaaaattgagatttataaaatcgtaatcaaaatcga 8409790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 5376021 - 5375933
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||| ||||||| |||||||||||||| ||| |||   | ||||||||| |||||||||||||||| ||||||||||||||||||    
T  5376021 ccaaggttgtcaaaattgggactttacttcaggtcaaaaataaatagtaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggatt 5375933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 36121177 - 36121091
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| ||||||||||| ||||||||||||| |||||||| |||   ||| |||||||||||||||| ||||||||||||| ||||    
T  36121177 aaggttgtcaaaatcgggtctttacttcaagttgaaagggaatagcttaatcgggactcgtaaaatcggaatcaaaatcgaaagatt 36121091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 23064737 - 23064822
Alignment:
Q  225 aggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||   |||| || ||||||||||||| ||||||||| ||||||||    
T  23064737 aggttgtcaaaatcgggactttacttcaggtcgaaagggaataacgaaatcggaactcgtaaaatcgcaatcaaaattgaaggatt 23064822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 9911193 - 9911272
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||  |||||||||||||  |||||||||| ||||||||| |||||||||||||||| ||| |||| |||||||||    
T  9911193 tcaaaattaggactttacttcatatcgaaagggaatagtaaaatcgggactcgtaaaatcgcaataaaaaacgaaggatt 9911272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 8010914 - 8010997
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| |||||||||||||||     |||| || |||||| ||| ||||| |||||||||||||||| ||||||||||||||||||    
T  8010914 caaggttgtcaaaatcgggactta----caaggcggaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggatt 8010997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 13023903 - 13023846
Alignment:
Q  233 aaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatc 290  Q
    ||||| ||||||||||||||||||||||| || ||| ||||| || ||||||||||||    
T  13023903 aaaattgggactttacttcaagtcgaaagagaatagcaaaatcggaactcgtaaaatc 13023846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 6346728 - 6346816
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||| |||||||||| | ||| ||||| |||||||||||  || ||||| |  | ||||||||||  ||||||||||||||||||    
T  6346728 ccaaggttgtcaaaatcggaaatttgcttcaggtcgaaagggaagagcaaaatcgaaaatcgtaaaatcacaatcaaaatcgaaggatt 6346816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 7452860 - 7452773
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| |||||||  ||| ||| ||||| |||||||||||  || ||| |||  | ||||||||||| ||||||||||||||||||    
T  7452860 caaggttgtcaaaattaggattttgcttcaggtcgaaagggaagagaaaagttgaaaatcgtaaaatcgcaatcaaaatcgaaggatt 7452773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 13551463 - 13551533
Alignment:
Q  240 ggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||  ||||||| ||| ||| |||||   |||||||||||||| ||| ||||||||||||||    
T  13551463 ggactttacttctggtcgaaaaggaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggatt 13551533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 8367510 - 8367470
Alignment:
Q  270 aaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||| |||||||||||||| | ||||||||||||||||||    
T  8367510 aaaatcgggactcgtaaaattgcaatcaaaatcgaaggatt 8367470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 15051872 - 15051958
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||||||||||| ||||||||||||||||||    
T  15051872 aaggttatcaaaatcgggactttacttcaagtcgaaaaggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggatt 15051958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 41427774 - 41427687
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| ||||||||| ||||||||||| |||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||    
T  41427774 caaggttgtcaaaatcgagactttacttcgagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggatt 41427687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 18844068 - 18843990
Alignment:
Q  225 aggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcg 303  Q
    ||||| |||||||||| ||||||||||| ||||||||||| ||| ||||| |||||||||||||||| |||||||||||    
T  18844068 aggttgtcaaaatcggaactttacttcaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcg 18843990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 332
Target Start/End: Complemental strand, 19579291 - 19579187
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggatta-gtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt--actcaaggtctttagta 327  Q
    |||||||||||| ||||||||| ||||||||||| || | ||||||||||||| |||||||| ||||||||||||||||||  |||||||| |||| |||    
T  19579291 tcaaaatcgggattttacttcaggtcgaaagggagtaagcaaaattgggactcataaaatcgcaatcaaaatcgaaggatttcactcaaggacttttgta 19579192  T
Q  328 taatc 332  Q
     ||||    
T  19579191 gaatc 19579187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 20321297 - 20321211
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| ||||||| |||||||||||||| ||| ||| ||| ||||||||| ||||||| |||||||| ||||||||| ||||||||    
T  20321297 aaggttgtcaaaattgggactttacttcaggtcaaaaaggaatagtaaaatcgggactcataaaatcgcaatcaaaattgaaggatt 20321211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 41688441 - 41688527
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| |||||||||||||||||||| | | ||||||||| ||| ||||| ||||||| |||||||| || |||||||||||||||    
T  41688441 aaggttgtcaaaatcgggactttactttaggacgaaagggaatagcaaaatcgggactcctaaaatcgcaaccaaaatcgaaggatt 41688527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 22645501 - 22645588
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| ||||| |||| ||||||||||  ||| ||||||| ||| ||||||| |||||||||||| | ||||||||||||||||||    
T  22645501 caaggttgtcaaagtcggaactttacttctggtctaaagggaatagcaaaattgagactcgtaaaattgcaatcaaaatcgaaggatt 22645588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 43235223 - 43235136
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| ||||||| ||||||||||||| || ||||||||| ||| |||||  | |||| |||||||| ||||||||||||||||||    
T  43235223 caaggttgtcaaaattgggactttacttcgagacgaaagggaatagcaaaatcagtactcataaaatcgcaatcaaaatcgaaggatt 43235136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 6852339 - 6852417
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaa 300  Q
    |||||||| ||||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |||||| | ||||||||    
T  6852339 ccaaggttgtcaaaatcgggacttcacttcaggtcgaaagggaatagcaaaatcgggactcataaaattgcaatcaaaa 6852417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 27339962 - 27340048
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| |||||||||| |||||||||||||| |||||||| ||| ||||| |  | |||| |||||| ||||||||||||||||||    
T  27339962 aaggttgtcaaaatcggaactttacttcaagttgaaagggaatagcaaaatcgaaaatcgtgaaatcgcaatcaaaatcgaaggatt 27340048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 18051315 - 18051386
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatc 302  Q
    |||||||||||| ||||||| | ||||||||||| ||| ||||| |||||| ||| ||||| ||||||||||    
T  18051315 tcaaaatcgggattttactttaggtcgaaagggaatagaaaaatcgggacttgtagaatcgcaatcaaaatc 18051386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 13341471 - 13341524
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattg 276  Q
    ||||||| |||||||||||| ||| |||||| |||||||||| ||| |||||||    
T  13341471 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggaatagaaaaattg 13341524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 24648333 - 24648277
Alignment:
Q  254 gtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||||||  |||||||| |  | |||||||||||||||||||||| |||||||    
T  24648333 gtcgaaagggaagagtaaaatcgaaaatcgtaaaatcgtaatcaaaatcaaaggatt 24648277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 34703022 - 34702982
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaaggga 264  Q
    |||||| ||||||||| || |||||||||||||||||||||    
T  34703022 aaggttgtcaaaatcgagattttacttcaagtcgaaaggga 34702982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2084 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 221 - 310
Target Start/End: Complemental strand, 185 - 96
Alignment:
Q  221 tccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||| ||||||||||||||    
T  185 tccaaggttatcaaaatcgggactttacttcaagtcaaaagggagtagcaaaatcgggactcgtaaaattgtaattaaaatcgaaggatt 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 14698 - 14787
Alignment:
Q  221 tccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||| |||||||||||||||| ||||||||||||||||||    
T  14698 tccaaggttatcaaaatcggggctttacttcaagtcgaaatggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggatt 14787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 18014345 - 18014259
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||||||||||||||||||||  ||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  18014345 aaggttatcaaaatcgggactttacttcaagttaaaatggagtagcaaaattgggactcgtaaaatcgcaatcaaaatcgaaggatt 18014259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 8560230 - 8560342
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggt 319  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| | ||||||| |||||| ||||||||||||||||  |||||||||||    
T  8560230 ccaaggttatcaaaatcgggactttacttcaagtcaaaagggagtagcaaaatcgagactcgtgaaatcgcaatcaaaatcgaaggattttactcaaggt 8560329  T
Q  320 ctttagtataatc 332  Q
     ||| ||| ||||    
T  8560330 tttttgtagaatc 8560342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 24619972 - 24620058
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| |||||||||| ||||||||||||||| ||||||| ||| |||||||||||| ||||||||| ||||||||||||||||||    
T  24619972 aaggttgtcaaaatcggaactttacttcaagtcaaaagggaatagcaaaattgggacttgtaaaatcgcaatcaaaatcgaaggatt 24620058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 3041572 - 3041491
Alignment:
Q  229 tatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||||||||| ||||||||||||||||| ||| ||| ||||| |||||||||||||||| ||||||||||||||||||    
T  3041572 tatcaaaatcgggattttacttcaagtcgaaatggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggatt 3041491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 8592173 - 8592284
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| || ||||||||||||||||||||||||||||| | ||| ||||| | |||||||||||||| ||||||||||||||||  |||||||||| |    
T  8592173 caaggttgtcgaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggac 8592272  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  8592273 ttttgtagaatc 8592284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 22971163 - 22971077
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||| |||||||||||||||||  ||||| | ||| ||||| |||||||||||||||| ||||||||||||||||||    
T  22971163 caaggttatcaaaattgggactttacttcaagttaaaagg-agtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggatt 22971077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 20766675 - 20766757
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaa 305  Q
    ||||||| ||||||||||||||||||||||| ||||||| || ||| ||||| | |||||||||||||| |||||||||||||    
T  20766675 caaggttgtcaaaatcgggactttacttcaactcgaaagagagtagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaa 20766757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 9169950 - 9169869
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcga 304  Q
    |||| ||||||||||||| ||||||||||||||||||||| | ||| ||||||||||| |||||||| | ||||||||||||    
T  9169950 caagattatcaaaatcggaactttacttcaagtcgaaaggaagtagcaaaattgggacccgtaaaattgcaatcaaaatcga 9169869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 19348906 - 19348821
Alignment:
Q  225 aggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||| | |||||||||||||||| ||||||| ||| ||||| | |||||||||||||| ||||||||| ||||||||    
T  19348906 aggttatcaaaattgagactttacttcaagtcaaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaatggaaggatt 19348821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 28746131 - 28746048
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaag 306  Q
    ||||||| ||||||| |||||||||||||| ||||||||  | ||| ||||| |||||||||||||||| ||||||||||||||    
T  28746131 caaggttgtcaaaattgggactttacttcaggtcgaaagaaaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaag 28746048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 24649523 - 24649588
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaa 288  Q
    ||||||| ||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  24649523 caaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaa 24649588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 22355841 - 22355919
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatc 302  Q
    |||||| |||||||||| ||||||| ||| ||||||| ||| ||| ||||| |||||||||||||||| ||||||||||    
T  22355841 aaggttctcaaaatcggaactttacatcaggtcgaaatggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatc 22355919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 21553677 - 21553749
Alignment:
Q  233 aaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagg 307  Q
    ||||||||||||||||||||| |||||||||| ||| ||||| |||||| ||  ||||| |||||||||||||||    
T  21553677 aaaatcgggactttacttcaaatcgaaagggagtagaaaaatcgggactggt--aatcgcaatcaaaatcgaagg 21553749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 29067632 - 29067545
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||| |||||||||| ||||||||||| |||||| |||| ||| ||||| || |||| |||||||  |||| |||||||||||||    
T  29067632 ccaaggttgtcaaaatcggaactttacttcaggtcgaatgggaatagcaaaatcggaactcataaaatctcaatc-aaatcgaaggatt 29067545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 39428254 - 39428184
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaat 301  Q
    ||||||||||||||||||||   || |||||||| ||| ||||| ||||||| |||||||| |||||||||    
T  39428254 tcaaaatcgggactttacttgcggttgaaagggaatagcaaaatcgggactcataaaatcgcaatcaaaat 39428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 27090797 - 27090686
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| || |||||| || ||||||| | ||||||||||| ||| |||||||  | |||||| |||| ||| ||||||||||||  ||||||||||      
T  27090797 caaggttgtcgaaatcgagattttactttaggtcgaaagggaatagaaaaattgcaaatcgtaagatcgcaataaaaatcgaaggattttactcaaggaa 27090698  T
Q  321 tttagtataatc 332  Q
    ||| ||||||||    
T  27090697 ttttgtataatc 27090686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 30727654 - 30727714
Alignment:
Q  244 tttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcga 304  Q
    ||||||||| || |||||||| ||| ||||| | ||||| |||||||| ||||||||||||    
T  30727654 tttacttcaggttgaaagggaatagcaaaatcgagactcctaaaatcgcaatcaaaatcga 30727714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 20033995 - 20034107
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggt 319  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||| ||||||||| ||||||  ||||||||||     
T  20033995 ccaaagttatcaaaatcgggactttacttcaagtcgaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaattgaaggattttactcaagga 20034094  T
Q  320 ctttagtataatc 332  Q
    |||| ||| ||||    
T  20034095 cttttgtagaatc 20034107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 234 - 332
Target Start/End: Original strand, 27523881 - 27523981
Alignment:
Q  234 aaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtctttagtataat 331  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||  |||||||||| |||| ||| |||    
T  27523881 aaatcgggactttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaat 27523980  T
Q  332 c 332  Q
    |    
T  27523981 c 27523981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 974695 - 974582
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgg-gactcgtaaaatcgtaatcaaaatcgaagga--ttactcaagg 318  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| ||  ||||||||||||| ||||||||||||||||  ||||||||||    
T  974695 ccaaggttatcaatatcgggactttacttcaagtcgaaagggagtagcaaaatcggaaactcgtaaaatcgcaatcaaaatcgaaggattttactcaagg 974596  T
Q  319 tctttagtataatc 332  Q
     |||| ||| ||||    
T  974595 acttttgtagaatc 974582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 7302138 - 7302026
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggt 319  Q
    |||||||||||||||||||||||||||||||||| ||| |||  ||| ||||| |||||||||||||| | ||||||||||||||||  ||||||||||     
T  7302138 ccaaggttatcaaaatcgggactttacttcaagttgaaggggggtagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaagga 7302039  T
Q  320 ctttagtataatc 332  Q
    |||| ||| ||||    
T  7302038 cttttgtagaatc 7302026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 21869103 - 21869182
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||| ||| ||||||||||||||    
T  21869103 tcaaaatcgggactttacttcaagtcgaaagggaatagaaaaatcgggactcttaaaatcgcaattaaaatcgaaggatt 21869182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 19262090 - 19262201
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| || ||||||| |||||||||||||||||| |||| ||| ||||| |||||||||||||||| ||||||||||||| ||  |||||||||| |    
T  19262090 caaggttgtcgaaatcggaactttacttcaagtcgaatgggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaagattttactcaaggac 19262189  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  19262190 ttttgtagaatc 19262201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 20064079 - 20063967
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggt 319  Q
    |||||||| ||||||||||| |||||||||| || |||||||| ||| ||||| | |||||||||||||| |||||||||||||| |  ||||||||||     
T  20064079 ccaaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaagga 20063980  T
Q  320 ctttagtataatc 332  Q
    |||| ||| ||||    
T  20063979 cttttgtagaatc 20063967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 332
Target Start/End: Original strand, 31237758 - 31237861
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtctttagtat 328  Q
    |||||||| |||||||||||||  || ||||||| ||||||||| |||||||||||||||| |||||| |||||||||  |||||||||| |||| |||     
T  31237758 tcaaaatcaggactttacttcagttcaaaagggaatagtaaaatcgggactcgtaaaatcgcaatcaatatcgaaggattttactcaaggacttttgtaa 31237857  T
Q  329 aatc 332  Q
    ||||    
T  31237858 aatc 31237861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 25538920 - 25539006
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| |||||||||| ||||||| ||| ||||||||||| ||| ||||| ||| |||||||||||| |||||||||  |||||||    
T  25538920 aaggttgtcaaaatcggtactttacatcaggtcgaaagggaatagaaaaatcgggtctcgtaaaatcgcaatcaaaattaaaggatt 25539006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 30433169 - 30433083
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| ||||||||||||| |||||||| ||||||| | | ||| ||||| ||||||| |||||||| ||||||||||||| ||||    
T  30433169 aaggttgtcaaaatcgggacattacttcaggtcgaaaagcaatagaaaaatcgggactcataaaatcgcaatcaaaatcgaatgatt 30433083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 1405137 - 1405051
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| ||||||||| ||||||| || | ||| ||||||| ||| ||||| || |||| |||||||| ||||||||||||||||||    
T  1405137 aaggttgtcaaaatcgagactttaatttaggtcaaaagggaatagcaaaatcggtactcataaaatcgcaatcaaaatcgaaggatt 1405051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 19245944 - 19245857
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| |||||||||||| ||| |||||||| |||||||| ||| |||||    | ||||||||||| |||||||||| |||||||    
T  19245944 caaggttgtcaaaatcgggattttgcttcaagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaatctaaggatt 19245857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 36430156 - 36430117
Alignment:
Q  270 aaaattgggactcgtaaaatcgtaatcaaaatcgaaggat 309  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  36430156 aaaattgggactcgtaaaatcgcaatcaaaatcgaaggat 36430117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 13502473 - 13502533
Alignment:
Q  249 ttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggat 309  Q
    ||||||| ||||||||  |||||||| |  | ||||||||||||||||||||| |||||||    
T  13502473 ttcaagtggaaagggaagagtaaaatcgaaaatcgtaaaatcgtaatcaaaattgaaggat 13502533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 16125239 - 16125316
Alignment:
Q  233 aaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  16125239 aaaatcggaactttacttcaggtcgaaagggaatagtaaaattgggactcgtaaaatcgcaatcaaaatcgaaggatt 16125316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 17197306 - 17197414
Alignment:
Q  226 ggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtcttt 323  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||||||||| ||  ||||||||||||  |||||||||| ||||    
T  17197306 ggttatcaaaatcgggactttacttcaagtcgaaagggagtagcaaaatcggaactcgtaaaatcgcaactaaaatcgaaggattttactcaaggacttt 17197405  T
Q  324 agtataatc 332  Q
     ||| ||||    
T  17197406 tgtagaatc 17197414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 332
Target Start/End: Original strand, 25146534 - 25146653
Alignment:
Q  215 tttgtgtccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttac 312  Q
    |||||| |||||||| |||||||| ||||||||||||| || |||||||| ||| ||||| || | ||||||||||| ||||||||||||||||  ||||    
T  25146534 tttgtgaccaaggttgtcaaaatcaggactttacttcaggttgaaagggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaatcgaaggattttac 25146633  T
Q  313 tcaaggtctttagtataatc 332  Q
    ||||||||||| ||| ||||    
T  25146634 tcaaggtctttcgtagaatc 25146653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 13100545 - 13100458
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| |||||||||||||||||||||||||||||||||| | | ||||| || ||||||||||||| |||||||||| |||||||    
T  13100545 caaggttgtcaaaatcgggactttacttcaagtcgaaagggaatggcaaaatcggaactcgtaaaatcgcaatcaaaatcaaaggatt 13100458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 14074258 - 14074368
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtct 321  Q
    |||||| |||||||| ||||||||||||| ||||||||||| ||| |||||||| |||| |||||||  ||||||||||||||||  |||||||||| ||    
T  14074258 aaggttgtcaaaatcaggactttacttcaggtcgaaagggaatagcaaaattggaactcataaaatcacaatcaaaatcgaaggattttactcaaggact 14074357  T
Q  322 ttagtataatc 332  Q
    || ||| ||||    
T  14074358 tttgtagaatc 14074368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 9954816 - 9954894
Alignment:
Q  232 caaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||| ||||||||| | ||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||    
T  9954816 caaaatcggaactttacttaaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggatt 9954894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 21846050 - 21846159
Alignment:
Q  225 aggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtctt 322  Q
    ||||| |||||||| |||||||||| || ||||||||||| ||| ||||| ||||||| |||||||| ||||||||||||||||  |||||||||| |||    
T  21846050 aggttgtcaaaatcaggactttactccaggtcgaaagggaatagcaaaatcgggactcttaaaatcgcaatcaaaatcgaaggattttactcaaggactt 21846149  T
Q  323 tagtataatc 332  Q
    | ||| ||||    
T  21846150 ttgtagaatc 21846159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 9351837 - 9351924
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| ||||||||  |||||||||||| |||||||| || ||| ||||| |||||||||||||||| ||||||||||| ||||||    
T  9351837 caaggttgtcaaaatcaagactttacttcaggtcgaaagcgaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgtaggatt 9351924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 17055694 - 17055780
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| ||||||||||| |||||||| | ||||||||||  | ||||||| |||||||||||||||| ||||||||||||||||||    
T  17055694 caaggttgtcaaaatcgggtctttactt-aggtcgaaaggggattgtaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggatt 17055780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 12002638 - 12002720
Alignment:
Q  226 ggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||| ||||||||||||||||| || ||||||||||||| ||| |||||||||||||  ||||||  ||| ||||||||||||||    
T  12002638 ggttgtcaaaatcgggactttaatttaagtcgaaagggagtagcaaaattgggactc--aaaatcacaataaaaatcgaaggatt 12002720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 19009740 - 19009809
Alignment:
Q  241 gactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||  |||||||||| ||| ||||| |||||||||||||||| |||||||||| |||||||    
T  19009740 gactttacttcagatcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggatt 19009809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 23529011 - 23528900
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| |||||||||| |||||| |||| ||  ||| |||  ||||| || |||||||||||||||| ||||||||||||||||  |||||||||| |    
T  23529011 caaggttgtcaaaatcggaactttatttcaggttaaaaaggaacagtaagatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggac 23528912  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  23528911 ttttgtagaatc 23528900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 310
Target Start/End: Original strand, 9128616 - 9128699
Alignment:
Q  228 ttatcaaaatcgggactttacttcaagtcgaaa-gggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||| ||||| ||||||  ||| |||| ||| ||||| |||||||||||||||   |||||||||||||||||    
T  9128616 ttatcaaaatcgggattttacctcaagtaaaaaagggaatagcaaaatcgggactcgtaaaatcacgatcaaaatcgaaggatt 9128699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 17869532 - 17869611
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||||||||| || |||| ||| |||||||  || ||||| ||||| |||||||||| |||||||||| |||||||    
T  17869532 tcaaaatcgggactctaattcaggtcaaaagggaagagcaaaatcgggacacgtaaaatcgcaatcaaaatcaaaggatt 17869611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 8773612 - 8773536
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||| |||||||||| ||||||||||||| ||| | |||   |||||||||||||| ||| ||||| ||||||||    
T  8773612 tcaaaatcgagactttacttaaagtcgaaagggaatagcagaat---gactcgtaaaatcgcaattaaaattgaaggatt 8773536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 9954770 - 9954821
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaat 274  Q
    ||||||| |||||||||||||||||||| | ||||||||||| ||| |||||    
T  9954770 caaggttgtcaaaatcgggactttacttaaggtcgaaagggaatagcaaaat 9954821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 27502129 - 27502216
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| |||||||||||| ||||||||||||| | |  || ||| ||||  | ||||| |||||| | ||||||||||||||||||    
T  27502129 caaggttgtcaaaatcgggaatttacttcaagtcaacatagaatagcaaaaccgagactcataaaattgcaatcaaaatcgaaggatt 27502216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 9321556 - 9321596
Alignment:
Q  270 aaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||| || ||||||||||||| ||||||||||||||||||    
T  9321556 aaaatcggaactcgtaaaatcgcaatcaaaatcgaaggatt 9321596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 40541593 - 40541681
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||| ||||||||| ||| ||||    
T  40541593 ccaaggttatcaaaatcgggactttacttcaagtcgaaaggaagtagcaaaatcgggactcgtaaaatcgcaatcaaaattgaaagatt 40541681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 16752373 - 16752291
Alignment:
Q  228 ttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||    
T  16752373 ttatcaaaattggaactttacttcaagtcgaaagggagtagcaaaattgggactcgtaaaatcgcaaacaaaatcgaaggatt 16752291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 2040475 - 2040387
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||| ||||| ||||||||||||||||||||||||||||| || ||| ||||| || ||||||||||||| ||||||||||||||||||    
T  2040475 ccaaagttatgaaaatcgggactttacttcaagtcgaaagagagtagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggatt 2040387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 7489057 - 7489168
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| |||||||| ||||||||||||||||||||||| | ||| |||||| ||||||||||||||| ||||||||||| ||||  |||||||||| |    
T  7489057 caaggttgtcaaaatcaggactttacttcaagtcgaaaggaaatagcaaaattaggactcgtaaaatcgcaatcaaaatcggaggattttactcaaggac 7489156  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  7489157 ttttgtagaatc 7489168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 11879956 - 11879868
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||| |||||||||||| ||||||||| ||| ||||||| ||||||||| || ||||||||||||| ||||||||||||||||||    
T  11879956 ccaaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggatt 11879868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 11897372 - 11897284
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||| |||||||||||| ||||||||| ||| ||||||| ||||||||| || ||||||||||||| ||||||||||||||||||    
T  11897372 ccaaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggatt 11897284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 45403376 - 45403297
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||||| |||| ||||||||||| ||| ||||| | |||||||||||||| ||||||||||||||||||    
T  45403376 tcaaaatcgggactttatttcacgtcgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggatt 45403297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 24414062 - 24414148
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| ||||||| || ||||||||||| ||||||||||| ||| ||||||  |||||||||||||| ||||||||||||||||||    
T  24414062 aaggttgtcaaaattggaactttacttcatgtcgaaagggaatagcaaaatttagactcgtaaaatcgcaatcaaaatcgaaggatt 24414148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 19704247 - 19704328
Alignment:
Q  239 gggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaagg 318  Q
    |||| ||||||||||||| ||||||| ||| ||||| |||||||||||||||| |||||||||| |||||  ||||||||||    
T  19704247 gggattttacttcaagtccaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggaatttactcaagg 19704328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 5922400 - 5922316
Alignment:
Q  226 ggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||| |||||||||||||||||||||| ||||||||||| ||| |||||  | ||  ||| ||||| ||||||||||||||||||    
T  5922400 ggttgtcaaaatcgggactttacttcaggtcgaaagggaatagcaaaatcagaacatgtacaatcgcaatcaaaatcgaaggatt 5922316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 7262093 - 7262006
Alignment:
Q  247 acttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtctttagtataatc 332  Q
    ||||| |||||||||| | ||| ||||| |||||||||||||||| |||||||||  |||||  |||||||||| |||| ||| ||||    
T  7262093 acttccagtcgaaaggaagtagcaaaatcgggactcgtaaaatcgcaatcaaaattaaaggattttactcaaggacttttgtagaatc 7262006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 17647351 - 17647265
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| | |||||||||| ||| ||||| |||||||| ||| || ||||| |  | || |||||||| ||||||||||||||||||    
T  17647351 aaggttgttaaaatcgggattttgcttcaggtcgaaagagatgagcaaaatcgacaatcataaaatcgcaatcaaaatcgaaggatt 17647265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 19335329 - 19335244
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| |||||||||||||||||||| | ||| ||| | | |||||||||||| |||| || ||||  |||||||||||| |||||    
T  19335329 aaggttgtcaaaatcgggactttactttaggtcaaaaagaaatagtaaaattggaactc-tacaatcacaatcaaaatcgatggatt 19335244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 23142528 - 23142442
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| |||||||| |||||||| ||||| |||||||||| ||| ||||  || | ||||||||||| |||  |||||||| ||||    
T  23142528 aaggttgtcaaaatcaggactttatttcaattcgaaagggaatagcaaaaccggtaatcgtaaaatcgcaatttaaatcgaatgatt 23142442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 15294978 - 15294937
Alignment:
Q  269 taaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| ||||||| |||||||| ||||||||||||||||||    
T  15294978 taaaatcgggactcctaaaatcgcaatcaaaatcgaaggatt 15294937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 15475347 - 15475306
Alignment:
Q  269 taaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| ||||||| |||||||| ||||||||||||||||||    
T  15475347 taaaatcgggactcctaaaatcgcaatcaaaatcgaaggatt 15475306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 27836120 - 27836160
Alignment:
Q  270 aaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||| ||| ||||||||||| ||||||||||||||||||    
T  27836120 aaaattaggattcgtaaaatcgcaatcaaaatcgaaggatt 27836160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 31424518 - 31424442
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaa 300  Q
    |||||| ||||||||| || ||||||||| |||||||| ||| || ||||| |  | ||||||||||| ||||||||    
T  31424518 aaggttgtcaaaatcgagattttacttcaggtcgaaagagatgagcaaaatcgacaatcgtaaaatcgcaatcaaaa 31424442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 7223870 - 7223759
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||| | ||||||||||||||||  |||||||||| |    
T  7223870 caaggttgtcaaaatcgggactttacttcaggtcgaaagggaatagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaaggac 7223771  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  7223770 ttttgtagaatc 7223759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 27890741 - 27890630
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| ||||| ||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| ||||||  |||||||||| |    
T  27890741 caaggttgtcaaattcgagactttacttcaagttgaaagggagtagtaaaattggaactcgtaaaatcgtaatcaaaattgaaggattttactcaaggac 27890642  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  27890641 ttttgtagaatc 27890630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 22498214 - 22498301
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| ||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||| ||| ||||    
T  22498214 caaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaatcgcaatcaaaattgaacgatt 22498301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 17103551 - 17103439
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggt 319  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||  |||||  ||||||||||||||| |||||| | |||||||  ||||||||||     
T  17103551 ccaaggttgtcaaaatcgggactttacttcaagtcgaaagggaataacaaaatcaggactcgtaaaatcgcaatcaataccgaaggattttactcaagga 17103452  T
Q  320 ctttagtataatc 332  Q
    |||| ||| ||||    
T  17103451 cttttgtagaatc 17103439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 19748688 - 19748577
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| ||||||||||||||||| |||| || |||||||| ||| ||||| |||| ||||||||||| ||||||||||||||||  |||||||||| |    
T  19748688 caaggttgtcaaaatcgggactttaattcaggttgaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactcaaggac 19748589  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  19748588 ttttgtagaatc 19748577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 11327335 - 11327447
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggt 319  Q
    |||||||| ||||||||||| |||||||||| || |||||||| ||| ||||| | |||||||||||||| |||||||||||||| |  ||||||||||     
T  11327335 ccaaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaagga 11327434  T
Q  320 ctttagtataatc 332  Q
    |||| ||| ||||    
T  11327435 cttttgtagaatc 11327447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 17543503 - 17543615
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggt 319  Q
    |||||||| | ||||| |||||||||||||| ||||||| ||| ||| ||||| ||||||| |||||||| ||||||||||||||||  ||||||||||     
T  17543503 ccaaggttgttaaaattgggactttacttcaggtcgaaaaggaatagcaaaatcgggactcataaaatcgaaatcaaaatcgaaggattttactcaagga 17543602  T
Q  320 ctttagtataatc 332  Q
    |||| ||| ||||    
T  17543603 cttttgtagaatc 17543615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 17250412 - 17250300
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaat--cgaagga--ttactcaagg 318  Q
    |||||||||||||||||||||||||||||| ||||||||| | | |   |||||||||||||||||||| |||||||||   ||||||  ||||||||||    
T  17250412 caaggttatcaaaatcgggactttacttcaggtcgaaaggaaat-ggcgaattgggactcgtaaaatcgcaatcaaaataaagaaggattttactcaagg 17250314  T
Q  319 tctttagtataatc 332  Q
    ||||||||| ||||    
T  17250313 tctttagtagaatc 17250300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 21355030 - 21354943
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| ||||||| |||| |||||||||||| |||||||| ||| |||||  ||||||||||||||| |||||||||||| |||||    
T  21355030 caaggttgtcaaaattgggattttacttcaagttgaaagggaatagaaaaatcaggactcgtaaaatcgcaatcaaaatcgatggatt 21354943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 26053078 - 26053157
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||| ||||||||||||| ||||||||| | ||| |||||||||||||||||||||  ||||||||||||| ||||    
T  26053078 tcaaaatcaggactttacttcaggtcgaaaggaaatagcaaaattgggactcgtaaaatcccaatcaaaatcgaatgatt 26053157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 26073131 - 26073210
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||| ||||||||||||| ||||||||| | ||| |||||||||||||||||||||  ||||||||||||| ||||    
T  26073131 tcaaaatcaggactttacttcaggtcgaaaggaaatagcaaaattgggactcgtaaaatcccaatcaaaatcgaatgatt 26073210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 27614438 - 27614517
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||  ||| ||||||||| ||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||||    
T  27614438 tcaaaattaggaatttacttcaggtcgaaagggaatagtaaaatcgggactcgtaaaatcacaatcaaaatcgaaggatt 27614517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 3573674 - 3573759
Alignment:
Q  224 aaggttatcaaaatcgggactttacttcaagtcg-aaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga 308  Q
    |||||| |||||||||||||||||||||| |||| ||||||| ||| |||||  ||||||||||||||| ||||||||||| ||||    
T  3573674 aaggttgtcaaaatcgggactttacttcaggtcgaaaagggaatagcaaaatcaggactcgtaaaatcgcaatcaaaatcgtagga 3573759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 7918123 - 7918235
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggt 319  Q
    |||||||| ||||||||||| |||||||||| ||||||||||| ||| | |||  ||||||||||||| | |||||||||||||| |  ||||||||||     
T  7918123 ccaaggttgtcaaaatcggggctttacttcaggtcgaaagggaatagcagaatcaggactcgtaaaattgcaatcaaaatcgaagaattttactcaagga 7918222  T
Q  320 ctttagtataatc 332  Q
    |||| ||| ||||    
T  7918223 cttttgtagaatc 7918235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 15527883 - 15527995
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggt 319  Q
    |||||| ||||||||||  |||||||||||| ||||||||| | ||| ||||| || ||||| ||||||| ||||||||||||||||  ||||||||||     
T  15527883 ccaaggctatcaaaatcctgactttacttcaggtcgaaaggaaatagcaaaatcggaactcggaaaatcgcaatcaaaatcgaaggattttactcaagga 15527982  T
Q  320 ctttagtataatc 332  Q
    |||| ||| ||||    
T  15527983 cttttgtagaatc 15527995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 27233073 - 27233184
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt--actcaaggtc 320  Q
    ||||||| ||||||||| | |||||||||| ||| ||||||| |   ||||| ||||||| |||||||| ||||||||| ||||||||  ||||||||||    
T  27233073 caaggttgtcaaaatcgagcctttacttcaggtcaaaagggaatgacaaaatcgggactcataaaatcgcaatcaaaattgaaggattttactcaaggtc 27233172  T
Q  321 tttagtataatc 332  Q
    ||||||| ||||    
T  27233173 tttagtagaatc 27233184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 31108502 - 31108431
Alignment:
Q  231 tcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatc 302  Q
    |||||||| ||||||||||||| ||||||||||| ||| ||||| | || |||||||| || ||||||||||    
T  31108502 tcaaaatcaggactttacttcaggtcgaaagggaatagcaaaatcgagattcgtaaaaccgcaatcaaaatc 31108431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 8511 - 8424
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||| | | ||||||||||||||||    
T  8511 caaggttatcaaaatcgggagtttactttaagtcgaaagggagtagtaaaattgggactcataaaattgcagtcaaaatcgaaggatt 8424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 8803 - 8709
Alignment:
Q  216 ttgtgtccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||||||| ||  ||||| || ||||||||||||| ||||||||| ||||||||    
T  8803 ttgtatccaaggttctcaaaatcgggactttacttcaggtcgaaagggaataacaaaatcggaactcgtaaaatcgcaatcaaaattgaaggatt 8709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 38300 - 38387
Alignment:
Q  222 ccaaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||||||| |||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||| | |||| | |||||||||||    
T  38300 ccaaggttgtcaaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgggactcgtaaaattgcaatc-agatcgaaggatt 38387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 24735 - 24662
Alignment:
Q  229 tatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatc 302  Q
    ||||||||||   ||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||    
T  24735 tatcaaaatcaaaactttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaattgtaatcaaaatc 24662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 56199 - 56310
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtc 320  Q
    ||||||| ||||||||| |||||||||||| ||||||||||| ||| ||||| | |||   |||||||| ||||||||||||||||  |||||||||| |    
T  56199 caaggttgtcaaaatcgagactttacttcaggtcgaaagggaatagcaaaatcgagacatctaaaatcgcaatcaaaatcgaaggattttactcaaggac 56298  T
Q  321 tttagtataatc 332  Q
    ||| ||| ||||    
T  56299 ttttgtagaatc 56310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 76083 - 76169
Alignment:
Q  223 caaggttatcaaaatcgggactttacttcaagtcgaaagggattagtaaaattgggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||| ||||||||||||||||||||| |||||||||| | ||| |||   |||||||||||||| | ||| || |||||||||||    
T  76083 caaggttgtcaaaatcgggactttacttccagtcgaaaggaaatagcaaacccgggactcgtaaaattgcaat-aagatcgaaggatt 76169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 132943 - 132976
Alignment:
Q  277 ggactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    ||||||||||||||| ||||||||||||||||||    
T  132943 ggactcgtaaaatcgcaatcaaaatcgaaggatt 132976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 7284 - 7316
Alignment:
Q  278 gactcgtaaaatcgtaatcaaaatcgaaggatt 310  Q
    |||| ||||||||||||||||||||||||||||    
T  7284 gacttgtaaaatcgtaatcaaaatcgaaggatt 7316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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