View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_26 (Length: 333)
Name: NF15205_low_26
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 42326111 - 42326231
Alignment:
| Q |
54 |
acaataagaaaaacataagttattttgggtttttgtttgtcataaattatatgtttgtaagtcatgtacgaaaatgagattttaagagaatttatactaa |
153 |
Q |
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| T |
42326111 |
acaataagaaaaacataagttattttgggtttttgtttgtcataaattatatgtttgtaagtcatgtacgaaaatgagattttaagagaatttatact-a |
42326209 |
T |
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| Q |
154 |
aaaaatattataatttgaaaca |
175 |
Q |
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| T |
42326210 |
aaaaatattataatttgaaaca |
42326231 |
T |
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Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 42326273 - 42326372
Alignment:
| Q |
200 |
agattttttgtttaaattctaacaaacggataaaaactccatgaattgattagtattgattattttctttaaaaaataacaatttaccagatatcatatg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42326273 |
agattttttgtttaaattctaacaaacggataaaaactccatgaattgattagtattgattattttctttaaaaaataacaattgaccagatatcatatg |
42326372 |
T |
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