View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_3 (Length: 722)
Name: NF15205_low_3
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 28 - 533
Target Start/End: Complemental strand, 5529610 - 5529101
Alignment:
| Q |
28 |
ggaaaattaaatttaatatgttcaagcccaatgagagnnnnnnnnnnncctttccaaatcgattattgttttcaccaacggcatatcttaatcgagagat |
127 |
Q |
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| T |
5529610 |
ggaagattaaatttaatatgttcaagcccaatgagagtgttttttttttctttccaaatcgattcttgttttcaccaacggcatatcttaatcgagagat |
5529511 |
T |
|
| Q |
128 |
agataatatttttt-aaggttgaaaaataaaaagagtatattggtttttatctttataattcgtattctaaacaaaaagt---tgtcacatgatttagtc |
223 |
Q |
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| T |
5529510 |
agataatatttttttaaggttgaaaaataaaaagagtatattggtttttatctttataattcgtattctaaacaaaaagtacttgtcacatgatttagtc |
5529411 |
T |
|
| Q |
224 |
atgaacaatagttcttatttttgttcagtcttttgctaactattttatccagtctcatgacaagtttttaaaaacaaacaaggtacaaagaaattgtcaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5529410 |
atgaacaatagttcttatttttgttcagtcttttgctaactattttatccagtctcatgaaaagtttttaaaaacaaacaaggtacaaagaaattgtcaa |
5529311 |
T |
|
| Q |
324 |
ctccagtcccaannnnnnnnaaggacaaacccatgttttttaacaaatgtaacacaaacataaaatcataagatattattatttccattcaccttaaact |
423 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5529310 |
ctccagtcccaattttttttaaggacagacccatgttttttaacaaatgaaacacaaacataaaatcataagatattattatttccattcaccttaaact |
5529211 |
T |
|
| Q |
424 |
ttttgtttctatgaactattgatttatttcctgatattgattattgtttatactccattattttaaatggaacttttatccctcctcacttatttgatag |
523 |
Q |
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| T |
5529210 |
ttttgtttctatgaactattgatttatttcatgatattgattatagtttatactccatcattttaaatggaacttttatcccacctcacttatttgatag |
5529111 |
T |
|
| Q |
524 |
ctaaaattaa |
533 |
Q |
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|||||||||| |
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| T |
5529110 |
ctaaaattaa |
5529101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 524 - 706
Target Start/End: Complemental strand, 5528700 - 5528518
Alignment:
| Q |
524 |
ctaaaattaatgtgtaaaccacattgaggtggataatttataatcaagccaataatacaatgtcgtggtataaagttctttcgattcaatttattgttct |
623 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |
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| T |
5528700 |
ctaaaagtaatgtgtaaaccacattgagatggataatttataatcaagccaataatacaatgccgtggtataaagctctttcgactcaatttattgttct |
5528601 |
T |
|
| Q |
624 |
tctttctctgttttcatgtaattttagagcattcttctttcttcattatcatgacgaatgaaggcaacagtgacggtacagtg |
706 |
Q |
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| T |
5528600 |
tctttctctgttttcatgtatttttagagcattcttctttcttcattatcatgacgaatgaagacaacagtgacggtacagtg |
5528518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 6143658 - 6143605
Alignment:
| Q |
470 |
tttatactccattattttaaatggaa-cttttatccctcctcacttatttgata |
522 |
Q |
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||||||||||||||||||||||| || ||||||||| ||||||| |||||||| |
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| T |
6143658 |
tttatactccattattttaaatgaaatattttatcccgcctcactcatttgata |
6143605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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