View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_30 (Length: 264)
Name: NF15205_low_30
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 2900774 - 2901007
Alignment:
| Q |
14 |
ctgcgtgcacttcatgtgaataatgaaaaggcaaagatgttactgaggcctgacataactgctgtcactgaacctcatcacatctggccttctctaagtg |
113 |
Q |
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| T |
2900774 |
ctgcgtgcacttcatgtgaataatgaaaaggcaaagatgttactgaggcctgacataactgctgtcactgaacctcatcacatctggccttctctaagtg |
2900873 |
T |
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| Q |
114 |
atgaccagtggatgaaggtggaggttgcattaagagatcttatactttctgattatgcaaagaaaaacaatgtgaatacttcagctttgacccagtctga |
213 |
Q |
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| T |
2900874 |
atgaccagtggatgaaggtggaggttgcattaagagatcttatactttctgattatgcaaagaaaaacaatgtgaatacttcagctttgacccagtctga |
2900973 |
T |
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| Q |
214 |
gattcgtgatattatacttggagctgagattact |
247 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2900974 |
gattcgtgatattatacttggagctgagattact |
2901007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 44776503 - 44776385
Alignment:
| Q |
129 |
aggtggaggttgcattaagagatcttatactttctgattatgcaaagaaaaacaatgtgaatacttcagctttgacccagtctgagattcgtgatattat |
228 |
Q |
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| T |
44776503 |
aggtggaggttgcattaagagatctcatactttctgattatgcaaagaaaaacaacgtgaatacttctgctttgactcagtctgagattcgtgatattat |
44776404 |
T |
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| Q |
229 |
acttggagctgagattact |
247 |
Q |
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| T |
44776403 |
actcggggctgagattact |
44776385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 44776907 - 44776789
Alignment:
| Q |
14 |
ctgcgtgcacttcatgtgaataatgaaaaggcaaagatgttactgaggcctgacataactgctgtcactgaacctcatcacatctggccttctctaagtg |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44776907 |
ctgcgtgcacttcatgtgaataatgaaaaggcgaagatgttactgaagcctgacaaaactatcgtcactgaacctcatcacatctggccttctctaagtg |
44776808 |
T |
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| Q |
114 |
atgaccagtggatgaaggt |
132 |
Q |
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||||||||||||||||||| |
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| T |
44776807 |
atgaccagtggatgaaggt |
44776789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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